Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003146

Physical Location & Seq

Genomic Coordinates Reverse (-)

17568469 .. 17569152

Gene Structure 684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG208400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGAAGAAGAGCAATCAACAACCGCCACCTCTTCTTCTGGTTCAACCACCTCTGCACAATGTGAAGCAGGAAATAAGATTAGCAAGAGAGTGAAGAAGCAGCAAGTAGTCGAAAACGGGAGCGAGAAAAGAGCAAAGAGTGATGGGAGTGAAGAAGGTAGTAAGCAGCATCCAATGTATAGAGGAGTTCGAATGCGTCAATGGGGGAAATGGGTATCAGAAATCAGAGAGCCGAGAAAGAAGTCGAGAATATGGCTCGGAACATTTGAGACACCAGAAATGGCGGCTCGAGCTCACGACGTGGCGGCTCTGACGATCAAAGGCCGCTCGGCCTACTTAAACTTCCCCGAGCTAGCTAAGGAGCTTCCTCGTCCAGATAGCTCATCGCCGAAGGACATTCAAGCTGCTGCAGCCAAAGCCGCTGCTATTAGCTACCCTAACTGCAGCAGTAGCCATGAAGCTCATGAAGAGGAAGAAGTCCAGCCGGTTCAAGATTCATCAACTTCACCAATATCAGATGATCATAACGATGATACATTTTATGACCTTCCTGATCTGCTGTTAGATGTTGGACAGTATCACGGTGATCATGAGTACTACTTTCCGGTGGCGACCTGGCAGCTCGGAGGAGCCGATCCGATTGATACAAGTCTTAGAATGGAAGAGTCTTTCTTATGGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

227

Amino Acids

25.3

Weight (kDa)

5.08

Isoelectric Point (pI)

56.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	59 - 108	2.1e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77200 AT2G25820 AT2G35700 AT3G16280 AT3G16280 AT3G60490 AT4G16750 AT4G32800
fragaria_vesca	FvH4_5g19440 FvH4_5g19460
malus_domestica	MD04G1060400.v1.1 MD06G1053600.v1.1
prunus_persica	Prupe.5G065300_v2.0.a1
pyrus_communis	pycom04g05400 pycom06g04520
rosa_chinensis	RchiOBHm_Chr7g0203971 RchiOBHm_Chr7g0204031
rosa_laevigata	RLG00000003493 RLG00000003495
rosa_multiflora	Rmu_sc0001311.1_g000005 Rmu_sc0001843.1_g000006 Rmu_sc0004074.1_g000008
rosa_roxburghii	Rroxscaffold_3G00253410 Rroxscaffold_3G00253430
rosa_rugosa	Rorug07G0074800 Rorug07G0079700 Rorug07G0080000
rosa_samantha	Rh7AG209700 Rh7AG210000 Rh7BG203400 Rh7BG208400 Rh7BG208500 Rh7CG222200 Rh7CG222500 Rh7DG216700
rosa_wichuraiana	Rw7G018260 Rw7G018280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	327
AciI	CCGC	5 cut(s)	24, 284, 305, 325, 420
AclWI	GGATC	1 cut(s)	629
AdeI	CACNNNGTG	2 cut(s)	62, 301
AfaI	GTAC	1 cut(s)	596
AgsI	TTSAA	3 cut(s)	45, 401, 491
AjiI	CACGTC	1 cut(s)	301
AjnI	CCWGG	1 cut(s)	614
AluBI	AGCT	9 cut(s)	293, 352, 356, 364, 381, 404, 432, 461, 622
AluI	AGCT	9 cut(s)	293, 352, 356, 364, 381, 404, 432, 461, 622
Alw21I	GWGCWC	1 cut(s)	295
Alw26I	GTCTC	1 cut(s)	263
AlwI	GGATC	1 cut(s)	629
Ama87I	CYCGRG	2 cut(s)	288, 347
AoxI	GGCC	2 cut(s)	322, 330
ApeKI	GCWGC	8 cut(s)	100, 166, 404, 407, 410, 422, 444, 619
AsuHPI	GGTGA	2 cut(s)	498, 596
AsuII	TTCGAA	1 cut(s)	190
AsuNHI	GCTAGC	1 cut(s)	352
AvaI	CYCGRG	2 cut(s)	288, 347
BanII	GRGCYC	1 cut(s)	295
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	8 cut(s)	112, 178, 391, 394, 409, 422, 456, 631
BccI	CCATC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	616
BclI	TGATCA	2 cut(s)	520, 586
BcoDI	GTCTC	1 cut(s)	263
BfaI	CTAG	1 cut(s)	353
BfmI	CTRYAG	2 cut(s)	408, 442
BmcAI	AGTACT	1 cut(s)	596
Bme1390I	CCNGG	1 cut(s)	616
BmeT110I	CYCGRG	2 cut(s)	288, 347
BmgBI	CACGTC	1 cut(s)	301
BmiI	GGNNCC	1 cut(s)	631
BmrFI	CCNGG	1 cut(s)	616
BmsI	GCATC	1 cut(s)	178
BmtI	GCTAGC	1 cut(s)	356
Bpu10I	CCTNAGC	1 cut(s)	357
Bpu14I	TTCGAA	1 cut(s)	190
BsaWI	WCCGGW	1 cut(s)	604
Bse118I	RCCGGY	1 cut(s)	484
BseBI	CCWGG	1 cut(s)	616
BseGI	GGATG	1 cut(s)	169
BseRI	GAGGAG	2 cut(s)	198, 642
BseXI	GCAGC	8 cut(s)	112, 178, 391, 394, 409, 422, 456, 631
BsgI	GTGCAG	1 cut(s)	39
BshFI	GGCC	2 cut(s)	324, 332
BsiHKAI	GWGCWC	1 cut(s)	295
BsiHKCI	CYCGRG	2 cut(s)	288, 347
BsiSI	CCGG	2 cut(s)	485, 605
BsmAI	GTCTC	1 cut(s)	263
BsmI	GAATGC	1 cut(s)	198
BsnI	GGCC	2 cut(s)	324, 332
BsoBI	CYCGRG	2 cut(s)	288, 347
Bsp119I	TTCGAA	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	5 cut(s)	315, 520, 553, 586, 634
BspACI	CCGC	5 cut(s)	24, 284, 305, 325, 420
BspANI	GGCC	2 cut(s)	324, 332
BspHI	TCATGA	2 cut(s)	463, 589
BspLI	GGNNCC	1 cut(s)	631
BspMAI	CTGCAG	2 cut(s)	412, 446
BspOI	GCTAGC	1 cut(s)	356
BspPI	GGATC	1 cut(s)	629
BspQI	GCTCTTC	1 cut(s)	3
BspT104I	TTCGAA	1 cut(s)	190
BsrBI	CCGCTC	1 cut(s)	327
BsrFI	RCCGGY	1 cut(s)	484
BssAI	RCCGGY	1 cut(s)	484
BssMI	GATC	5 cut(s)	315, 520, 553, 586, 634
Bst2UI	CCWGG	1 cut(s)	616
Bst4CI	ACNGT	2 cut(s)	576, 584
Bst6I	CTCTTC	4 cut(s)	3, 37, 462, 657
BstBI	TTCGAA	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	2 cut(s)	357, 653
BstF5I	GGATG	1 cut(s)	169
BstKTI	GATC	5 cut(s)	318, 523, 556, 589, 637
BstMAI	GTCTC	1 cut(s)	263
BstMBI	GATC	5 cut(s)	315, 520, 553, 586, 634
BstMWI	GCNNNNNNNGC	5 cut(s)	290, 410, 416, 419, 450
BstNI	CCWGG	1 cut(s)	616
BstSCI	CCNGG	1 cut(s)	614
BstSFI	CTRYAG	2 cut(s)	408, 442
BstV1I	GCAGC	8 cut(s)	112, 178, 391, 394, 409, 422, 456, 631
BsuRI	GGCC	2 cut(s)	324, 332
BtgZI	GCGATG	1 cut(s)	369
BtrI	CACGTC	1 cut(s)	301
BtsCI	GGATG	1 cut(s)	169
Cac8I	GCNNGC	1 cut(s)	354
CciI	TCATGA	2 cut(s)	463, 589
Cfr10I	RCCGGY	1 cut(s)	484
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	1 cut(s)	595
CviAII	CATG	3 cut(s)	455, 464, 590
CviQI	GTAC	1 cut(s)	595
DdeI	CTNAG	2 cut(s)	357, 653
DpnI	GATC	5 cut(s)	317, 522, 555, 588, 636
DpnII	GATC	5 cut(s)	315, 520, 553, 586, 634
DraIII	CACNNNGTG	2 cut(s)	62, 301
Eam1104I	CTCTTC	4 cut(s)	3, 37, 462, 657
EarI	CTCTTC	4 cut(s)	3, 37, 462, 657
Ecl136II	GAGCTC	1 cut(s)	293
Eco24I	GRGCYC	1 cut(s)	295
Eco53kI	GAGCTC	1 cut(s)	293
Eco88I	CYCGRG	2 cut(s)	288, 347
EcoICRI	GAGCTC	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	614
EcoT38I	GRGCYC	1 cut(s)	295
FaeI	CATG	3 cut(s)	458, 467, 593
FaiI	YATR	8 cut(s)	180, 253, 456, 465, 525, 543, 591, 676
FatI	CATG	3 cut(s)	454, 463, 589
FbaI	TGATCA	2 cut(s)	520, 586
FokI	GGATG	1 cut(s)	156
FriOI	GRGCYC	1 cut(s)	295
FspBI	CTAG	1 cut(s)	353
HaeIII	GGCC	2 cut(s)	324, 332
HapII	CCGG	2 cut(s)	485, 605
HgaI	GACGC	1 cut(s)	185
Hin1II	CATG	3 cut(s)	458, 467, 593
HinfI	GANTC	2 cut(s)	494, 665
HpaII	CCGG	2 cut(s)	485, 605
HphI	GGTGA	2 cut(s)	498, 596
Hpy188I	TCNGA	7 cut(s)	220, 227, 260, 312, 517, 626, 639
Hpy188III	TCNNGA	7 cut(s)	246, 296, 374, 464, 491, 551, 590
Hpy99I	CGWCG	1 cut(s)	302
HpyAV	CCTTC	3 cut(s)	149, 385, 557
HpyCH4III	ACNGT	2 cut(s)	576, 584
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	3 cut(s)	56, 410, 444
HpyF10VI	GCNNNNNNNGC	5 cut(s)	290, 410, 416, 419, 450
HpyF3I	CTNAG	2 cut(s)	357, 653
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	3 cut(s)	458, 467, 593
Ksp22I	TGATCA	2 cut(s)	520, 586
Kzo9I	GATC	5 cut(s)	315, 520, 553, 586, 634
LguI	GCTCTTC	1 cut(s)	3
LmnI	GCTCC	3 cut(s)	120, 361, 629
Lsp1109I	GCAGC	8 cut(s)	112, 178, 391, 394, 409, 422, 456, 631
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	353
MaeII	ACGT	1 cut(s)	300
MalI	GATC	5 cut(s)	317, 522, 555, 588, 636
MbiI	CCGCTC	1 cut(s)	327
MboI	GATC	5 cut(s)	315, 520, 553, 586, 634
MboII	GAAGA	9 cut(s)	17, 20, 24, 27, 106, 164, 479, 485, 674
MhlI	GDGCHC	1 cut(s)	295
MlyI	GAGTC	1 cut(s)	674
MmeI	TCCRAC	1 cut(s)	550
MnlI	CCTC	6 cut(s)	40, 61, 176, 378, 463, 620
MseI	TTAA	2 cut(s)	338, 682
MslI	CAYNNNNRTG	1 cut(s)	528
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	2 cut(s)	485, 605
MspR9I	CCNGG	1 cut(s)	616
Mva1269I	GAATGC	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	616
MwoI	GCNNNNNNNGC	5 cut(s)	290, 410, 416, 419, 450
NdeII	GATC	5 cut(s)	315, 520, 553, 586, 634
NheI	GCTAGC	1 cut(s)	352
NlaIII	CATG	3 cut(s)	458, 467, 593
NlaIV	GGNNCC	1 cut(s)	631
NmeAIII	GCCGAG	2 cut(s)	258, 308
NspV	TTCGAA	1 cut(s)	190
PaeR7I	CTCGAG	1 cut(s)	288
PagI	TCATGA	2 cut(s)	463, 589
PciSI	GCTCTTC	1 cut(s)	3
PcsI	WCGNNNNNNNCGW	1 cut(s)	630
PctI	GAATGC	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	494
PleI	GAGTC	1 cut(s)	673
PpsI	GAGTC	1 cut(s)	673
Psp124BI	GAGCTC	1 cut(s)	295
Psp6I	CCWGG	1 cut(s)	614
PspGI	CCWGG	1 cut(s)	614
PspN4I	GGNNCC	1 cut(s)	631
PspXI	VCTCGAGB	1 cut(s)	288
PstI	CTGCAG	2 cut(s)	412, 446
RsaI	GTAC	1 cut(s)	596
RsaNI	GTAC	1 cut(s)	595
RseI	CAYNNNNRTG	1 cut(s)	528
SacI	GAGCTC	1 cut(s)	295
SapI	GCTCTTC	1 cut(s)	3
SaqAI	TTAA	2 cut(s)	338, 682
Sau3AI	GATC	5 cut(s)	315, 520, 553, 586, 634
ScaI	AGTACT	1 cut(s)	596
SchI	GAGTC	1 cut(s)	674
ScrFI	CCNGG	1 cut(s)	616
SduI	GDGCHC	1 cut(s)	295
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	2 cut(s)	408, 442
Sfr274I	CTCGAG	1 cut(s)	288
SfuI	TTCGAA	1 cut(s)	190
SlaI	CTCGAG	1 cut(s)	288
SmiMI	CAYNNNNRTG	1 cut(s)	528
SmlI	CTYRAG	1 cut(s)	288
SmoI	CTYRAG	1 cut(s)	288
SsiI	CCGC	5 cut(s)	24, 284, 305, 325, 420
SspMI	CTAG	1 cut(s)	353
SstI	GAGCTC	1 cut(s)	295
StyD4I	CCNGG	1 cut(s)	614
TaaI	ACNGT	2 cut(s)	576, 584
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	4 cut(s)	111, 190, 245, 289
TatI	WGTACW	1 cut(s)	594
TauI	GCSGC	4 cut(s)	287, 308, 327, 422
TfiI	GAWTC	1 cut(s)	494
Tru1I	TTAA	2 cut(s)	338, 682
Tru9I	TTAA	2 cut(s)	338, 682
TseI	GCWGC	8 cut(s)	100, 166, 404, 407, 410, 422, 444, 619
TspDTI	ATGAA	3 cut(s)	471, 480, 486
XhoI	CTCGAG	1 cut(s)	288
XspI	CTAG	1 cut(s)	353
ZrmI	AGTACT	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.