Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003146

Physical Location & Seq

Genomic Coordinates Reverse (-)

5193767 .. 5194553

Gene Structure 787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g05400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGAAGAAGAACAATTCAATTTTATAGATTGTGAGGCTCAGACCACATCTTCTTACTCGAATTCTACCACCTCTCCTTCTGCAGAATCTCCGGCACGAAAAATTAGCGAGAGATCATCATCGTCGTCGTCATCAAATCAAATACAACTACTTGATGGTCATGAGAAAAAGAAAGCAAAGATTAACAATGGTATTAATGGTGATGGGAGGCAGCAGAGGCATCCTCATAAACCAACGTATAGGGGAGTGAGAATGCGTCAATGGGGCAAATGGGTCTCAGAAATCCGAGAGCCCAGAAAGAAGTCAAGAATTTGGCTTGGAACTTTTCCCACCCCCGAAATGGCCGCTCGCGCACATGATGTCGCCGCTCTTACTATCAAAGGCCGCTCTGCGGTGCTCAACTTCCCTGAGCTGGCTCAAGAGCTTCCTGTTCCGGCTTCCGCCTTGCCAAAGGACATCCAAGTTGCCGCTGCCAAGGCAGCTGCAAGTACCTACCCAACTAGAAGCTGCAGAAGCAGCAGCCTTGAAGCAGAAGCGGAAGCCGAAACAGAGCTGATCAGCCAAGCTGTTCATGACAGCAGTACTCATGATTCATCATCAACTTCCCCATCAAACAGTTACAACGATGACATGTTTTTTAACCTTCCTGATCTGCTTTTAGATGTTGGGCATCACAGTGATCCTGGGTTTCGCTTCTCTGTGCCATGGCTTGATGAAGAGCCGGAGTTCTTGTGGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

247

Amino Acids

27.32

Weight (kDa)

5.78

Isoelectric Point (pI)

56.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77200 AT2G25820 AT2G35700 AT3G16280 AT3G16280 AT3G60490 AT4G16750 AT4G32800
fragaria_vesca	FvH4_5g19440 FvH4_5g19460
malus_domestica	MD04G1060400.v1.1 MD06G1053600.v1.1
prunus_persica	Prupe.5G065300_v2.0.a1
pyrus_communis	pycom04g05400 pycom06g04520
rosa_chinensis	RchiOBHm_Chr7g0203971 RchiOBHm_Chr7g0204031
rosa_laevigata	RLG00000003493 RLG00000003495
rosa_multiflora	Rmu_sc0001311.1_g000005 Rmu_sc0001843.1_g000006 Rmu_sc0004074.1_g000008
rosa_roxburghii	Rroxscaffold_3G00253410 Rroxscaffold_3G00253430
rosa_rugosa	Rorug07G0074800 Rorug07G0079700 Rorug07G0080000
rosa_samantha	Rh7AG209700 Rh7AG210000 Rh7BG203400 Rh7BG208400 Rh7BG208500 Rh7CG222200 Rh7CG222500 Rh7DG216700
rosa_wichuraiana	Rw7G018260 Rw7G018280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	347, 368, 387
AccII	CGCG	1 cut(s)	351
AciI	CCGC	7 cut(s)	345, 366, 385, 392, 441, 468, 536
AclWI	GGATC	1 cut(s)	674
AcoI	YGGCCR	1 cut(s)	342
AcsI	RAATTY	2 cut(s)	61, 309
AfaI	GTAC	2 cut(s)	490, 583
AfiI	CCNNNNNNNGG	3 cut(s)	340, 391, 412
AflIII	ACRYGT	1 cut(s)	630
AgsI	TTSAA	2 cut(s)	19, 527
AjnI	CCWGG	1 cut(s)	682
AluBI	AGCT	6 cut(s)	412, 424, 482, 507, 553, 566
AluI	AGCT	6 cut(s)	412, 424, 482, 507, 553, 566
Alw21I	GWGCWC	1 cut(s)	399
Alw26I	GTCTC	1 cut(s)	280
AlwI	GGATC	1 cut(s)	674
AoxI	GGCC	2 cut(s)	342, 382
ApeKI	GCWGC	7 cut(s)	211, 470, 479, 482, 507, 516, 519
ApoI	RAATTY	2 cut(s)	61, 309
AseI	ATTAAT	1 cut(s)	195
AspLEI	GCGC	1 cut(s)	353
AsuHPI	GGTGA	1 cut(s)	212
BanII	GRGCYC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	399
BbvI	GCAGC	7 cut(s)	223, 457, 469, 491, 494, 528, 531
BccI	CCATC	3 cut(s)	149, 197, 616
BciT130I	CCWGG	1 cut(s)	684
BclI	TGATCA	1 cut(s)	555
BcoDI	GTCTC	1 cut(s)	280
BfaI	CTAG	1 cut(s)	501
BfmI	CTRYAG	2 cut(s)	81, 508
BmcAI	AGTACT	1 cut(s)	583
Bme1390I	CCNGG	1 cut(s)	684
BmrFI	CCNGG	1 cut(s)	684
BmsI	GCATC	2 cut(s)	229, 679
BplI	GAGNNNNNCTC	2 cut(s)	208, 240
Bpu10I	CCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	402
BsaBI	GATNNNNATC	1 cut(s)	118
BsaI	GGTCTC	1 cut(s)	280
BsaJI	CCNNGG	3 cut(s)	474, 683, 704
BsaXI	ACNNNNNCTCC	3 cut(s)	58, 88, 716
Bsc4I	CCNNNNNNNGG	3 cut(s)	340, 391, 412
Bse8I	GATNNNNATC	1 cut(s)	118
BseBI	CCWGG	1 cut(s)	684
BseDI	CCNNGG	3 cut(s)	474, 683, 704
BseGI	GGATG	2 cut(s)	220, 456
BseJI	GATNNNNATC	1 cut(s)	118
BseLI	CCNNNNNNNGG	3 cut(s)	340, 391, 412
BseMII	CTCAG	3 cut(s)	53, 291, 399
BseXI	GCAGC	7 cut(s)	223, 457, 469, 491, 494, 528, 531
Bsh1236I	CGCG	1 cut(s)	351
BshFI	GGCC	2 cut(s)	344, 384
BsiHKAI	GWGCWC	1 cut(s)	399
BsiSI	CCGG	3 cut(s)	92, 434, 722
BslI	CCNNNNNNNGG	3 cut(s)	340, 391, 412
BsmAI	GTCTC	1 cut(s)	280
BsmI	GAATGC	1 cut(s)	258
BsnI	GGCC	2 cut(s)	344, 384
Bso31I	GGTCTC	1 cut(s)	280
Bsp1286I	GDGCHC	2 cut(s)	294, 399
Bsp143I	GATC	4 cut(s)	113, 555, 649, 679
Bsp19I	CCATGG	1 cut(s)	704
BspACI	CCGC	7 cut(s)	345, 366, 385, 392, 441, 468, 536
BspANI	GGCC	2 cut(s)	344, 384
BspCNI	CTCAG	3 cut(s)	52, 290, 400
BspFNI	CGCG	1 cut(s)	351
BspHI	TCATGA	3 cut(s)	160, 571, 586
BspMAI	CTGCAG	2 cut(s)	85, 512
BspPI	GGATC	1 cut(s)	674
BspQI	GCTCTTC	1 cut(s)	711
BspTNI	GGTCTC	1 cut(s)	280
BsrBI	CCGCTC	3 cut(s)	347, 368, 387
BssECI	CCNNGG	3 cut(s)	474, 683, 704
BssMI	GATC	4 cut(s)	113, 555, 649, 679
BssT1I	CCWWGG	2 cut(s)	474, 704
Bst2UI	CCWGG	1 cut(s)	684
Bst4CI	ACNGT	2 cut(s)	617, 677
Bst6I	CTCTTC	1 cut(s)	711
BstC8I	GCNNGC	2 cut(s)	349, 414
BstDEI	CTNAG	3 cut(s)	39, 277, 408
BstDSI	CCRYGG	1 cut(s)	704
BstF5I	GGATG	2 cut(s)	220, 456
BstFNI	CGCG	1 cut(s)	351
BstHHI	GCGC	1 cut(s)	353
BstKTI	GATC	4 cut(s)	116, 558, 652, 682
BstMAI	GTCTC	1 cut(s)	280
BstMBI	GATC	4 cut(s)	113, 555, 649, 679
BstMWI	GCNNNNNNNGC	6 cut(s)	217, 350, 476, 479, 513, 516
BstNI	CCWGG	1 cut(s)	684
BstNSI	RCATGY	1 cut(s)	634
BstSCI	CCNGG	1 cut(s)	682
BstSFI	CTRYAG	2 cut(s)	81, 508
BstUI	CGCG	1 cut(s)	351
BstV1I	GCAGC	7 cut(s)	223, 457, 469, 491, 494, 528, 531
BsuRI	GGCC	2 cut(s)	344, 384
BtgI	CCRYGG	1 cut(s)	704
BtsCI	GGATG	2 cut(s)	220, 456
BtsIMutI	CAGTG	1 cut(s)	682
Cac8I	GCNNGC	2 cut(s)	349, 414
CciI	TCATGA	3 cut(s)	160, 571, 586
CfoI	GCGC	1 cut(s)	353
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	2 cut(s)	489, 582
CviAII	CATG	6 cut(s)	161, 356, 572, 587, 631, 705
CviQI	GTAC	2 cut(s)	489, 582
DdeI	CTNAG	3 cut(s)	39, 277, 408
DpnI	GATC	4 cut(s)	115, 557, 651, 681
DpnII	GATC	4 cut(s)	113, 555, 649, 679
EaeI	YGGCCR	1 cut(s)	342
Eam1104I	CTCTTC	1 cut(s)	711
EarI	CTCTTC	1 cut(s)	711
EciI	GGCGGA	1 cut(s)	430
Eco130I	CCWWGG	2 cut(s)	474, 704
Eco24I	GRGCYC	1 cut(s)	294
Eco31I	GGTCTC	1 cut(s)	280
EcoRI	GAATTC	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	682
EcoT14I	CCWWGG	2 cut(s)	474, 704
EcoT38I	GRGCYC	1 cut(s)	294
ErhI	CCWWGG	2 cut(s)	474, 704
FaeI	CATG	6 cut(s)	164, 359, 575, 590, 634, 708
FaiI	YATR	9 cut(s)	26, 162, 228, 240, 357, 573, 588, 632, 706
FatI	CATG	6 cut(s)	160, 355, 571, 586, 630, 704
FbaI	TGATCA	1 cut(s)	555
FokI	GGATG	2 cut(s)	207, 443
FriOI	GRGCYC	1 cut(s)	294
FspBI	CTAG	1 cut(s)	501
GlaI	GCGC	1 cut(s)	352
HaeIII	GGCC	2 cut(s)	344, 384
HapII	CCGG	3 cut(s)	92, 434, 722
HgaI	GACGC	1 cut(s)	245
HhaI	GCGC	1 cut(s)	353
Hin1II	CATG	6 cut(s)	164, 359, 575, 590, 634, 708
Hin6I	GCGC	1 cut(s)	351
HinP1I	GCGC	1 cut(s)	351
HinfI	GANTC	2 cut(s)	86, 590
HpaII	CCGG	3 cut(s)	92, 434, 722
HphI	GGTGA	1 cut(s)	212
Hpy188I	TCNGA	3 cut(s)	42, 280, 287
Hpy188III	TCNNGA	6 cut(s)	161, 306, 419, 572, 587, 647
Hpy99I	CGWCG	2 cut(s)	127, 130
HpyAV	CCTTC	2 cut(s)	87, 653
HpyCH4III	ACNGT	2 cut(s)	617, 677
HpyCH4IV	ACGT	1 cut(s)	236
HpyCH4V	TGCA	3 cut(s)	83, 485, 510
HpyF10VI	GCNNNNNNNGC	6 cut(s)	217, 350, 476, 479, 513, 516
HpyF3I	CTNAG	3 cut(s)	39, 277, 408
HpySE526I	ACGT	1 cut(s)	236
Hsp92II	CATG	6 cut(s)	164, 359, 575, 590, 634, 708
HspAI	GCGC	1 cut(s)	351
Ksp22I	TGATCA	1 cut(s)	555
Kzo9I	GATC	4 cut(s)	113, 555, 649, 679
LguI	GCTCTTC	1 cut(s)	711
Lsp1109I	GCAGC	7 cut(s)	223, 457, 469, 491, 494, 528, 531
LweI	GCATC	2 cut(s)	229, 679
MaeI	CTAG	1 cut(s)	501
MaeII	ACGT	1 cut(s)	236
MaeIII	GTNAC	1 cut(s)	617
MalI	GATC	4 cut(s)	115, 557, 651, 681
MbiI	CCGCTC	3 cut(s)	347, 368, 387
MboI	GATC	4 cut(s)	113, 555, 649, 679
MboII	GAAGA	4 cut(s)	17, 20, 42, 728
MhlI	GDGCHC	2 cut(s)	294, 399
MluCI	AATT	5 cut(s)	14, 19, 61, 102, 309
MnlI	CCTC	5 cut(s)	28, 82, 201, 210, 234
MseI	TTAA	3 cut(s)	183, 195, 639
MslI	CAYNNNNRTG	1 cut(s)	675
MspA1I	CMGCKG	2 cut(s)	470, 482
MspI	CCGG	3 cut(s)	92, 434, 722
MspR9I	CCNGG	1 cut(s)	684
Mva1269I	GAATGC	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	684
MvnI	CGCG	1 cut(s)	351
MwoI	GCNNNNNNNGC	6 cut(s)	217, 350, 476, 479, 513, 516
NcoI	CCATGG	1 cut(s)	704
NdeII	GATC	4 cut(s)	113, 555, 649, 679
NlaIII	CATG	6 cut(s)	164, 359, 575, 590, 634, 708
NspI	RCATGY	1 cut(s)	634
PagI	TCATGA	3 cut(s)	160, 571, 586
PciI	ACATGT	1 cut(s)	630
PciSI	GCTCTTC	1 cut(s)	711
PctI	GAATGC	1 cut(s)	258
PfeI	GAWTC	2 cut(s)	86, 590
PscI	ACATGT	1 cut(s)	630
PshBI	ATTAAT	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	682
PspGI	CCWGG	1 cut(s)	682
PstI	CTGCAG	2 cut(s)	85, 512
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	2 cut(s)	490, 583
RsaNI	GTAC	2 cut(s)	489, 582
RseI	CAYNNNNRTG	1 cut(s)	675
SapI	GCTCTTC	1 cut(s)	711
SaqAI	TTAA	3 cut(s)	183, 195, 639
Sau3AI	GATC	4 cut(s)	113, 555, 649, 679
ScaI	AGTACT	1 cut(s)	583
ScrFI	CCNGG	1 cut(s)	684
SduI	GDGCHC	2 cut(s)	294, 399
SfaNI	GCATC	2 cut(s)	229, 679
SfcI	CTRYAG	2 cut(s)	81, 508
SmiMI	CAYNNNNRTG	1 cut(s)	675
SmlI	CTYRAG	1 cut(s)	417
SmoI	CTYRAG	1 cut(s)	417
Sse9I	AATT	5 cut(s)	14, 19, 61, 102, 309
SsiI	CCGC	7 cut(s)	345, 366, 385, 392, 441, 468, 536
SspMI	CTAG	1 cut(s)	501
StyD4I	CCNGG	1 cut(s)	682
StyI	CCWWGG	2 cut(s)	474, 704
TaaI	ACNGT	2 cut(s)	617, 677
TaiI	ACGT	1 cut(s)	239
TaqI	TCGA	1 cut(s)	59
TasI	AATT	5 cut(s)	14, 19, 61, 102, 309
TatI	WGTACW	1 cut(s)	581
TauI	GCSGC	4 cut(s)	347, 368, 387, 470
TfiI	GAWTC	2 cut(s)	86, 590
Tru1I	TTAA	3 cut(s)	183, 195, 639
Tru9I	TTAA	3 cut(s)	183, 195, 639
TscAI	CASTG	1 cut(s)	682
TseI	GCWGC	7 cut(s)	211, 470, 479, 482, 507, 516, 519
TspDTI	ATGAA	3 cut(s)	560, 582, 729
TspRI	CASTG	1 cut(s)	682
VspI	ATTAAT	1 cut(s)	195
XapI	RAATTY	2 cut(s)	61, 309
XceI	RCATGY	1 cut(s)	634
XcmI	CCANNNNNNNNNTGG	1 cut(s)	337
XspI	CTAG	1 cut(s)	501
ZrmI	AGTACT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.