Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003146

Physical Location & Seq

Genomic Coordinates Forward (+)

49212912 .. 49213592

Gene Structure 681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003495

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGAAGAAGAGCAATCAACAACCGCCACCTCTTCTTCTGGTTCAACCACCTTTGCACAATGTGAAGCAGGAAAGATTAGCAAGAGAGTGAAGAAGCAGCAAGTAGTCGAAAACGGGAGCGAGAAAAGAGCAAAGAGTGATGGGAGTGAAGAAGGTAGTAAGCAGCATCCAATGTACAGAGGAGTTCGAATGCGTCAATGGGGGAAATGGGTATCAGAAATCAGAGAGCCGAGAAAGAAGTCGAGAATATGGCTCGGAACATTTGAGACACCCGAAATGGCGGCTCGAGCTCACGACGTGGCCGCTCTGACGATCAAAGGCCGCTCGGCCTACTTAAACTTCCCCGAGCTAGCTAAGGAGCTTCCTCGTCCAGATAGCTCATCGCCGAAGGACATTCAAGCTGCTGCAGCCAAAGCCGCTGCTATTAGCTACCCTTACTGCAGCAGTAGCCATGAAGCTCATGAAGAGGAAGAAGCCCAGCCGGCTCAAGATTCATCAACTTCACCAATATCAGATGATCATAACGATGATACATTTTATGACCTTCCTGATCTGCTGTTAGATGTTGGACAGTATCACGGTGATCATGAGTACTACTTTCCGGTGGCGACCTGGCAGCTCGGAGGAGCCGATCCGATTGATACAAGTCTTAGAATGGAAGAGTCTTTCTTATGGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

227

Amino Acids

25.23

Weight (kDa)

5.08

Isoelectric Point (pI)

56.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	58 - 107	2.1e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77200 AT2G25820 AT2G35700 AT3G16280 AT3G16280 AT3G60490 AT4G16750 AT4G32800
fragaria_vesca	FvH4_5g19440 FvH4_5g19460
malus_domestica	MD04G1060400.v1.1 MD06G1053600.v1.1
prunus_persica	Prupe.5G065300_v2.0.a1
pyrus_communis	pycom04g05400 pycom06g04520
rosa_chinensis	RchiOBHm_Chr7g0203971 RchiOBHm_Chr7g0204031
rosa_laevigata	RLG00000003493 RLG00000003495
rosa_multiflora	Rmu_sc0001311.1_g000005 Rmu_sc0001843.1_g000006 Rmu_sc0004074.1_g000008
rosa_roxburghii	Rroxscaffold_3G00253410 Rroxscaffold_3G00253430
rosa_rugosa	Rorug07G0074800 Rorug07G0079700 Rorug07G0080000
rosa_samantha	Rh7AG209700 Rh7AG210000 Rh7BG203400 Rh7BG208400 Rh7BG208500 Rh7CG222200 Rh7CG222500 Rh7DG216700
rosa_wichuraiana	Rw7G018260 Rw7G018280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	305, 324
AciI	CCGC	5 cut(s)	24, 281, 303, 322, 417
AclWI	GGATC	1 cut(s)	626
AcoI	YGGCCR	1 cut(s)	300
AdeI	CACNNNGTG	2 cut(s)	62, 298
AfaI	GTAC	2 cut(s)	176, 593
AgsI	TTSAA	2 cut(s)	45, 398
AjiI	CACGTC	1 cut(s)	298
AjnI	CCWGG	1 cut(s)	611
AluBI	AGCT	9 cut(s)	290, 349, 353, 361, 378, 401, 429, 458, 619
AluI	AGCT	9 cut(s)	290, 349, 353, 361, 378, 401, 429, 458, 619
Alw21I	GWGCWC	1 cut(s)	292
Alw26I	GTCTC	1 cut(s)	260
AlwI	GGATC	1 cut(s)	626
Ama87I	CYCGRG	2 cut(s)	285, 344
AoxI	GGCC	3 cut(s)	300, 319, 327
ApeKI	GCWGC	8 cut(s)	97, 163, 401, 404, 407, 419, 441, 616
AsuHPI	GGTGA	2 cut(s)	495, 593
AsuII	TTCGAA	1 cut(s)	187
AsuNHI	GCTAGC	1 cut(s)	349
AvaI	CYCGRG	2 cut(s)	285, 344
BanII	GRGCYC	1 cut(s)	292
Bbv12I	GWGCWC	1 cut(s)	292
BbvI	GCAGC	8 cut(s)	109, 175, 388, 391, 406, 419, 453, 628
BccI	CCATC	1 cut(s)	134
BciT130I	CCWGG	1 cut(s)	613
BclI	TGATCA	2 cut(s)	517, 583
BcoDI	GTCTC	1 cut(s)	260
BfaI	CTAG	1 cut(s)	350
BfmI	CTRYAG	2 cut(s)	405, 439
BglI	GCCNNNNNGGC	1 cut(s)	482
BmcAI	AGTACT	1 cut(s)	593
Bme1390I	CCNGG	1 cut(s)	613
BmeT110I	CYCGRG	2 cut(s)	285, 344
BmgBI	CACGTC	1 cut(s)	298
BmiI	GGNNCC	1 cut(s)	628
BmrFI	CCNGG	1 cut(s)	613
BmsI	GCATC	1 cut(s)	175
BmtI	GCTAGC	1 cut(s)	353
Bpu10I	CCTNAGC	1 cut(s)	354
Bpu14I	TTCGAA	1 cut(s)	187
BpuEI	CTTGAG	1 cut(s)	471
BsaWI	WCCGGW	1 cut(s)	601
Bse118I	RCCGGY	1 cut(s)	481
BseBI	CCWGG	1 cut(s)	613
BseGI	GGATG	1 cut(s)	166
BseRI	GAGGAG	2 cut(s)	195, 639
BseXI	GCAGC	8 cut(s)	109, 175, 388, 391, 406, 419, 453, 628
BseYI	CCCAGC	1 cut(s)	477
BshFI	GGCC	3 cut(s)	302, 321, 329
BsiHKAI	GWGCWC	1 cut(s)	292
BsiHKCI	CYCGRG	2 cut(s)	285, 344
BsiSI	CCGG	2 cut(s)	482, 602
BsmAI	GTCTC	1 cut(s)	260
BsmI	GAATGC	1 cut(s)	195
BsnI	GGCC	3 cut(s)	302, 321, 329
BsoBI	CYCGRG	2 cut(s)	285, 344
Bsp119I	TTCGAA	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp1407I	TGTACA	1 cut(s)	174
Bsp143I	GATC	5 cut(s)	312, 517, 550, 583, 631
BspACI	CCGC	5 cut(s)	24, 281, 303, 322, 417
BspANI	GGCC	3 cut(s)	302, 321, 329
BspHI	TCATGA	2 cut(s)	460, 586
BspLI	GGNNCC	1 cut(s)	628
BspMAI	CTGCAG	2 cut(s)	409, 443
BspOI	GCTAGC	1 cut(s)	353
BspPI	GGATC	1 cut(s)	626
BspQI	GCTCTTC	1 cut(s)	3
BspT104I	TTCGAA	1 cut(s)	187
BsrBI	CCGCTC	2 cut(s)	305, 324
BsrFI	RCCGGY	1 cut(s)	481
BsrGI	TGTACA	1 cut(s)	174
BssAI	RCCGGY	1 cut(s)	481
BssMI	GATC	5 cut(s)	312, 517, 550, 583, 631
Bst2UI	CCWGG	1 cut(s)	613
Bst4CI	ACNGT	2 cut(s)	573, 581
Bst6I	CTCTTC	4 cut(s)	3, 37, 459, 654
BstAUI	TGTACA	1 cut(s)	174
BstBI	TTCGAA	1 cut(s)	187
BstC8I	GCNNGC	2 cut(s)	351, 483
BstDEI	CTNAG	2 cut(s)	354, 650
BstF5I	GGATG	1 cut(s)	166
BstKTI	GATC	5 cut(s)	315, 520, 553, 586, 634
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	5 cut(s)	312, 517, 550, 583, 631
BstMWI	GCNNNNNNNGC	6 cut(s)	287, 407, 413, 416, 447, 482
BstNI	CCWGG	1 cut(s)	613
BstSCI	CCNGG	1 cut(s)	611
BstSFI	CTRYAG	2 cut(s)	405, 439
BstV1I	GCAGC	8 cut(s)	109, 175, 388, 391, 406, 419, 453, 628
BsuRI	GGCC	3 cut(s)	302, 321, 329
BtgZI	GCGATG	1 cut(s)	366
BtrI	CACGTC	1 cut(s)	298
BtsCI	GGATG	1 cut(s)	166
Cac8I	GCNNGC	2 cut(s)	351, 483
CciI	TCATGA	2 cut(s)	460, 586
Cfr10I	RCCGGY	1 cut(s)	481
CseI	GACGC	1 cut(s)	182
Csp6I	GTAC	2 cut(s)	175, 592
CviAII	CATG	3 cut(s)	452, 461, 587
CviQI	GTAC	2 cut(s)	175, 592
DdeI	CTNAG	2 cut(s)	354, 650
DpnI	GATC	5 cut(s)	314, 519, 552, 585, 633
DpnII	GATC	5 cut(s)	312, 517, 550, 583, 631
DraIII	CACNNNGTG	2 cut(s)	62, 298
EaeI	YGGCCR	1 cut(s)	300
Eam1104I	CTCTTC	4 cut(s)	3, 37, 459, 654
EarI	CTCTTC	4 cut(s)	3, 37, 459, 654
Ecl136II	GAGCTC	1 cut(s)	290
Eco24I	GRGCYC	1 cut(s)	292
Eco53kI	GAGCTC	1 cut(s)	290
Eco88I	CYCGRG	2 cut(s)	285, 344
EcoICRI	GAGCTC	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	611
EcoT38I	GRGCYC	1 cut(s)	292
FaeI	CATG	3 cut(s)	455, 464, 590
FaiI	YATR	7 cut(s)	250, 453, 462, 522, 540, 588, 673
FatI	CATG	3 cut(s)	451, 460, 586
FbaI	TGATCA	2 cut(s)	517, 583
FokI	GGATG	1 cut(s)	153
FriOI	GRGCYC	1 cut(s)	292
FspBI	CTAG	1 cut(s)	350
GsaI	CCCAGC	1 cut(s)	481
HaeIII	GGCC	3 cut(s)	302, 321, 329
HapII	CCGG	2 cut(s)	482, 602
HgaI	GACGC	1 cut(s)	182
Hin1II	CATG	3 cut(s)	455, 464, 590
HinfI	GANTC	2 cut(s)	491, 662
HpaII	CCGG	2 cut(s)	482, 602
HphI	GGTGA	2 cut(s)	495, 593
Hpy188I	TCNGA	7 cut(s)	217, 224, 257, 309, 514, 623, 636
Hpy188III	TCNNGA	7 cut(s)	243, 293, 371, 461, 488, 548, 587
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	3 cut(s)	146, 382, 554
HpyCH4III	ACNGT	2 cut(s)	573, 581
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	3 cut(s)	56, 407, 441
HpyF10VI	GCNNNNNNNGC	6 cut(s)	287, 407, 413, 416, 447, 482
HpyF3I	CTNAG	2 cut(s)	354, 650
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	3 cut(s)	455, 464, 590
KroI	GCCGGC	1 cut(s)	481
KroNI	GCCGGC	1 cut(s)	483
Ksp22I	TGATCA	2 cut(s)	517, 583
Kzo9I	GATC	5 cut(s)	312, 517, 550, 583, 631
LguI	GCTCTTC	1 cut(s)	3
LmnI	GCTCC	3 cut(s)	117, 358, 626
LpnPI	CCDG	9 cut(s)	24, 54, 384, 491, 495, 561, 598, 615, 625
Lsp1109I	GCAGC	8 cut(s)	109, 175, 388, 391, 406, 419, 453, 628
LweI	GCATC	1 cut(s)	175
MaeI	CTAG	1 cut(s)	350
MaeII	ACGT	1 cut(s)	297
MalI	GATC	5 cut(s)	314, 519, 552, 585, 633
MbiI	CCGCTC	2 cut(s)	305, 324
MboI	GATC	5 cut(s)	312, 517, 550, 583, 631
MboII	GAAGA	9 cut(s)	17, 20, 24, 27, 103, 161, 476, 482, 671
MhlI	GDGCHC	1 cut(s)	292
MlyI	GAGTC	1 cut(s)	671
MmeI	TCCRAC	1 cut(s)	547
MnlI	CCTC	5 cut(s)	40, 173, 375, 460, 617
MroNI	GCCGGC	1 cut(s)	481
MseI	TTAA	2 cut(s)	335, 679
MslI	CAYNNNNRTG	1 cut(s)	525
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	2 cut(s)	482, 602
MspR9I	CCNGG	1 cut(s)	613
Mva1269I	GAATGC	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	613
MwoI	GCNNNNNNNGC	6 cut(s)	287, 407, 413, 416, 447, 482
NaeI	GCCGGC	1 cut(s)	483
NdeII	GATC	5 cut(s)	312, 517, 550, 583, 631
NgoMIV	GCCGGC	1 cut(s)	481
NheI	GCTAGC	1 cut(s)	349
NlaIII	CATG	3 cut(s)	455, 464, 590
NlaIV	GGNNCC	1 cut(s)	628
NmeAIII	GCCGAG	2 cut(s)	255, 305
NspV	TTCGAA	1 cut(s)	187
PaeR7I	CTCGAG	1 cut(s)	285
PagI	TCATGA	2 cut(s)	460, 586
PciSI	GCTCTTC	1 cut(s)	3
PcsI	WCGNNNNNNNCGW	1 cut(s)	627
PctI	GAATGC	1 cut(s)	195
PdiI	GCCGGC	1 cut(s)	483
PfeI	GAWTC	1 cut(s)	491
PleI	GAGTC	1 cut(s)	670
PpsI	GAGTC	1 cut(s)	670
Psp124BI	GAGCTC	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	611
PspFI	CCCAGC	1 cut(s)	477
PspGI	CCWGG	1 cut(s)	611
PspN4I	GGNNCC	1 cut(s)	628
PspXI	VCTCGAGB	1 cut(s)	285
PstI	CTGCAG	2 cut(s)	409, 443
RsaI	GTAC	2 cut(s)	176, 593
RsaNI	GTAC	2 cut(s)	175, 592
RseI	CAYNNNNRTG	1 cut(s)	525
SacI	GAGCTC	1 cut(s)	292
SapI	GCTCTTC	1 cut(s)	3
SaqAI	TTAA	2 cut(s)	335, 679
Sau3AI	GATC	5 cut(s)	312, 517, 550, 583, 631
ScaI	AGTACT	1 cut(s)	593
SchI	GAGTC	1 cut(s)	671
ScrFI	CCNGG	1 cut(s)	613
SduI	GDGCHC	1 cut(s)	292
SfaNI	GCATC	1 cut(s)	175
SfcI	CTRYAG	2 cut(s)	405, 439
Sfr274I	CTCGAG	1 cut(s)	285
SfuI	TTCGAA	1 cut(s)	187
SlaI	CTCGAG	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	525
SmlI	CTYRAG	2 cut(s)	285, 486
SmoI	CTYRAG	2 cut(s)	285, 486
SsiI	CCGC	5 cut(s)	24, 281, 303, 322, 417
SspMI	CTAG	1 cut(s)	350
SstI	GAGCTC	1 cut(s)	292
StyD4I	CCNGG	1 cut(s)	611
TaaI	ACNGT	2 cut(s)	573, 581
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	4 cut(s)	108, 187, 242, 286
TatI	WGTACW	2 cut(s)	174, 591
TauI	GCSGC	4 cut(s)	284, 305, 324, 419
TfiI	GAWTC	1 cut(s)	491
Tru1I	TTAA	2 cut(s)	335, 679
Tru9I	TTAA	2 cut(s)	335, 679
TseI	GCWGC	8 cut(s)	97, 163, 401, 404, 407, 419, 441, 616
TspDTI	ATGAA	3 cut(s)	468, 477, 483
XhoI	CTCGAG	1 cut(s)	285
XspI	CTAG	1 cut(s)	350
ZrmI	AGTACT	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.