Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0003146

Physical Location & Seq

Genomic Coordinates Reverse (-)

7848746 .. 7849507

Gene Structure 762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1053600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGGAGAAGAACAATTCAATTTTATAGACAGTGAGGCTCAAACCACATCTTCTTCTTACTCAAATTCTACCACCTCTCAATCACAAAAAATTAGCAAGAGATCATCATCATCAAATCAACTAGAACTACTTGATGGTCATCAAAAAGCTGCTACTGCTTTGACTACTAACGGTGATGATGATGATGATGATCAAATTAGTAAGAAGAAAGCAAAGATTAAAAAAAGGATTAATGGTGATGGGAGGCAGCAGAGGCATCCTCATCATCCAACGTATAGAGGAGTGAGAATGCGTCAGTGGGGCAAATGGGTCTCAGAAATCCGAGAGCCAAAAAAGAAGTCAAGAATTTGGCTTGGAACTTTTCCCATCCCCGAAATGGCCGCTCGAGCGCACGATGTCGCCGCTCTGACGATCAAAGGCAGCTCTGCTGTTCTCAACTTCCCTGATCTAGCTCAAGAGCTTCCTATTCCGGCTTCCGCCTCGCCAAAGGACATCCAAGCTGCTGCTGCTAAGGCAGCTGCTCTTACCTACCCAAGCAGCAGCCTTGAACAGGAAGCGGAAGTCGAGACAGAGCTGATCAGCCAAGCTGTTCACGACAGTAGTCCTCATGATTCATCATCAACTTCACCATCAACCAATTACAATGATGACATGTTTTTTGACCTCCCTGATCTGCTTTTAGATGTTGGGCATCACAGTGATCATGGGTTTATTTTCTCTGTGCCATGGCTTGATGAAGAGCCTGAGTTCTTGTGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

254

Amino Acids

28.06

Weight (kDa)

5.27

Isoelectric Point (pI)

48.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	91 - 140	3.8e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77200 AT2G25820 AT2G35700 AT3G16280 AT3G16280 AT3G60490 AT4G16750 AT4G32800
fragaria_vesca	FvH4_5g19440 FvH4_5g19460
malus_domestica	MD04G1060400.v1.1 MD06G1053600.v1.1
prunus_persica	Prupe.5G065300_v2.0.a1
pyrus_communis	pycom04g05400 pycom06g04520
rosa_chinensis	RchiOBHm_Chr7g0203971 RchiOBHm_Chr7g0204031
rosa_laevigata	RLG00000003493 RLG00000003495
rosa_multiflora	Rmu_sc0001311.1_g000005 Rmu_sc0001843.1_g000006 Rmu_sc0004074.1_g000008
rosa_roxburghii	Rroxscaffold_3G00253410 Rroxscaffold_3G00253430
rosa_rugosa	Rorug07G0074800 Rorug07G0079700 Rorug07G0080000
rosa_samantha	Rh7AG209700 Rh7AG210000 Rh7BG203400 Rh7BG208400 Rh7BG208500 Rh7CG222200 Rh7CG222500 Rh7DG216700
rosa_wichuraiana	Rw7G018260 Rw7G018280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	383, 404
AciI	CCGC	4 cut(s)	381, 402, 477, 557
AcoI	YGGCCR	1 cut(s)	378
AcsI	RAATTY	2 cut(s)	64, 345
AfiI	CCNNNNNNNGG	2 cut(s)	376, 550
AflIII	ACRYGT	1 cut(s)	651
AgsI	TTSAA	2 cut(s)	19, 548
AluBI	AGCT	8 cut(s)	149, 423, 452, 460, 500, 518, 574, 587
AluI	AGCT	8 cut(s)	149, 423, 452, 460, 500, 518, 574, 587
Alw26I	GTCTC	2 cut(s)	316, 560
Ama87I	CYCGRG	1 cut(s)	384
AoxI	GGCC	1 cut(s)	378
ApoI	RAATTY	2 cut(s)	64, 345
ArsI	GACNNNNNNTTYG	4 cut(s)	323, 355, 641, 673
AseI	ATTAAT	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	391
AsuHPI	GGTGA	3 cut(s)	185, 248, 618
AvaI	CYCGRG	1 cut(s)	384
BccI	CCATC	4 cut(s)	128, 233, 374, 637
BclI	TGATCA	3 cut(s)	190, 576, 700
BcoDI	GTCTC	2 cut(s)	316, 560
BfaI	CTAG	2 cut(s)	122, 449
BmeT110I	CYCGRG	1 cut(s)	384
BmsI	GCATC	2 cut(s)	265, 700
BoxI	GACNNNNGTC	1 cut(s)	600
BplI	GAGNNNNNCTC	2 cut(s)	244, 276
Bpu10I	CCTNAGC	1 cut(s)	510
BpuEI	CTTGAG	1 cut(s)	438
BsaBI	GATNNNNATC	3 cut(s)	106, 138, 189
BsaI	GGTCTC	1 cut(s)	316
BsaJI	CCNNGG	1 cut(s)	725
Bsc4I	CCNNNNNNNGG	2 cut(s)	376, 550
Bse8I	GATNNNNATC	3 cut(s)	106, 138, 189
BseDI	CCNNGG	1 cut(s)	725
BseGI	GGATG	4 cut(s)	256, 265, 366, 492
BseJI	GATNNNNATC	3 cut(s)	106, 138, 189
BseLI	CCNNNNNNNGG	2 cut(s)	376, 550
BseMII	CTCAG	2 cut(s)	327, 735
BseRI	GAGGAG	1 cut(s)	294
BshFI	GGCC	1 cut(s)	380
BsiHKCI	CYCGRG	1 cut(s)	384
BsiSI	CCGG	1 cut(s)	470
BslI	CCNNNNNNNGG	2 cut(s)	376, 550
BsmAI	GTCTC	2 cut(s)	316, 560
BsmI	GAATGC	1 cut(s)	294
BsnI	GGCC	1 cut(s)	380
Bso31I	GGTCTC	1 cut(s)	316
BsoBI	CYCGRG	1 cut(s)	384
Bsp143I	GATC	7 cut(s)	101, 190, 411, 445, 576, 670, 700
Bsp19I	CCATGG	1 cut(s)	725
BspACI	CCGC	4 cut(s)	381, 402, 477, 557
BspANI	GGCC	1 cut(s)	380
BspCNI	CTCAG	2 cut(s)	326, 736
BspHI	TCATGA	1 cut(s)	607
BspQI	GCTCTTC	1 cut(s)	732
BspTNI	GGTCTC	1 cut(s)	316
BsrBI	CCGCTC	2 cut(s)	383, 404
BssECI	CCNNGG	1 cut(s)	725
BssMI	GATC	7 cut(s)	101, 190, 411, 445, 576, 670, 700
BssT1I	CCWWGG	1 cut(s)	725
Bst4CI	ACNGT	4 cut(s)	32, 173, 599, 698
Bst6I	CTCTTC	1 cut(s)	732
BstDEI	CTNAG	3 cut(s)	313, 510, 744
BstDSI	CCRYGG	1 cut(s)	725
BstENI	CCTNNNNNAGG	1 cut(s)	548
BstF5I	GGATG	4 cut(s)	256, 265, 366, 492
BstHHI	GCGC	1 cut(s)	391
BstKTI	GATC	7 cut(s)	104, 193, 414, 448, 579, 673, 703
BstMAI	GTCTC	2 cut(s)	316, 560
BstMBI	GATC	7 cut(s)	101, 190, 411, 445, 576, 670, 700
BstMWI	GCNNNNNNNGC	6 cut(s)	155, 253, 386, 506, 512, 515
BstNSI	RCATGY	1 cut(s)	655
BstPAI	GACNNNNGTC	1 cut(s)	600
BsuRI	GGCC	1 cut(s)	380
BtgI	CCRYGG	1 cut(s)	725
BtsCI	GGATG	4 cut(s)	256, 265, 366, 492
BtsIMutI	CAGTG	3 cut(s)	37, 302, 703
CciI	TCATGA	1 cut(s)	607
CfoI	GCGC	1 cut(s)	391
CseI	GACGC	1 cut(s)	281
CviAII	CATG	4 cut(s)	608, 652, 704, 726
DdeI	CTNAG	3 cut(s)	313, 510, 744
DpnI	GATC	7 cut(s)	103, 192, 413, 447, 578, 672, 702
DpnII	GATC	7 cut(s)	101, 190, 411, 445, 576, 670, 700
EaeI	YGGCCR	1 cut(s)	378
Eam1104I	CTCTTC	1 cut(s)	732
EarI	CTCTTC	1 cut(s)	732
EciI	GGCGGA	1 cut(s)	466
Eco130I	CCWWGG	1 cut(s)	725
Eco31I	GGTCTC	1 cut(s)	316
Eco88I	CYCGRG	1 cut(s)	384
EcoNI	CCTNNNNNAGG	1 cut(s)	548
EcoT14I	CCWWGG	1 cut(s)	725
ErhI	CCWWGG	1 cut(s)	725
FaeI	CATG	4 cut(s)	611, 655, 707, 729
FaiI	YATR	6 cut(s)	26, 276, 609, 653, 705, 727
FatI	CATG	4 cut(s)	607, 651, 703, 725
FbaI	TGATCA	3 cut(s)	190, 576, 700
FokI	GGATG	4 cut(s)	243, 252, 353, 479
FspBI	CTAG	2 cut(s)	122, 449
GlaI	GCGC	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	380
HapII	CCGG	1 cut(s)	470
HgaI	GACGC	1 cut(s)	281
HhaI	GCGC	1 cut(s)	391
Hin1II	CATG	4 cut(s)	611, 655, 707, 729
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HinfI	GANTC	1 cut(s)	611
HpaII	CCGG	1 cut(s)	470
HphI	GGTGA	3 cut(s)	185, 248, 618
Hpy166II	GTNNAC	1 cut(s)	592
Hpy188I	TCNGA	3 cut(s)	316, 323, 408
Hpy188III	TCNNGA	5 cut(s)	342, 455, 565, 593, 608
Hpy8I	GTNNAC	1 cut(s)	592
HpyCH4III	ACNGT	4 cut(s)	32, 173, 599, 698
HpyCH4IV	ACGT	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	6 cut(s)	155, 253, 386, 506, 512, 515
HpyF3I	CTNAG	3 cut(s)	313, 510, 744
HpySE526I	ACGT	1 cut(s)	272
Hsp92II	CATG	4 cut(s)	611, 655, 707, 729
HspAI	GCGC	1 cut(s)	389
Ksp22I	TGATCA	3 cut(s)	190, 576, 700
Kzo9I	GATC	7 cut(s)	101, 190, 411, 445, 576, 670, 700
LguI	GCTCTTC	1 cut(s)	732
LpnPI	CCDG	5 cut(s)	456, 483, 536, 681, 756
LweI	GCATC	2 cut(s)	265, 700
MaeI	CTAG	2 cut(s)	122, 449
MaeII	ACGT	1 cut(s)	272
MalI	GATC	7 cut(s)	103, 192, 413, 447, 578, 672, 702
MbiI	CCGCTC	2 cut(s)	383, 404
MboI	GATC	7 cut(s)	101, 190, 411, 445, 576, 670, 700
MboII	GAAGA	5 cut(s)	20, 42, 45, 217, 749
MluCI	AATT	7 cut(s)	14, 19, 64, 90, 195, 345, 637
MmeI	TCCRAC	1 cut(s)	293
MnlI	CCTC	9 cut(s)	28, 85, 237, 246, 270, 272, 490, 615, 674
MseI	TTAA	2 cut(s)	219, 231
MslI	CAYNNNNRTG	1 cut(s)	696
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	1 cut(s)	470
Mva1269I	GAATGC	1 cut(s)	294
MwoI	GCNNNNNNNGC	6 cut(s)	155, 253, 386, 506, 512, 515
NcoI	CCATGG	1 cut(s)	725
NdeII	GATC	7 cut(s)	101, 190, 411, 445, 576, 670, 700
NlaIII	CATG	4 cut(s)	611, 655, 707, 729
NspI	RCATGY	1 cut(s)	655
PaeR7I	CTCGAG	1 cut(s)	384
PagI	TCATGA	1 cut(s)	607
PciI	ACATGT	1 cut(s)	651
PciSI	GCTCTTC	1 cut(s)	732
PctI	GAATGC	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	611
PscI	ACATGT	1 cut(s)	651
PshAI	GACNNNNGTC	1 cut(s)	600
PshBI	ATTAAT	1 cut(s)	231
PspXI	VCTCGAGB	1 cut(s)	384
PvuII	CAGCTG	1 cut(s)	518
RseI	CAYNNNNRTG	1 cut(s)	696
SapI	GCTCTTC	1 cut(s)	732
SaqAI	TTAA	2 cut(s)	219, 231
Sau3AI	GATC	7 cut(s)	101, 190, 411, 445, 576, 670, 700
SfaNI	GCATC	2 cut(s)	265, 700
Sfr274I	CTCGAG	1 cut(s)	384
SlaI	CTCGAG	1 cut(s)	384
SmiMI	CAYNNNNRTG	1 cut(s)	696
SmlI	CTYRAG	2 cut(s)	384, 453
SmoI	CTYRAG	2 cut(s)	384, 453
Sse9I	AATT	7 cut(s)	14, 19, 64, 90, 195, 345, 637
SsiI	CCGC	4 cut(s)	381, 402, 477, 557
SspMI	CTAG	2 cut(s)	122, 449
StyI	CCWWGG	1 cut(s)	725
TaaI	ACNGT	4 cut(s)	32, 173, 599, 698
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	2 cut(s)	385, 564
TasI	AATT	7 cut(s)	14, 19, 64, 90, 195, 345, 637
TauI	GCSGC	2 cut(s)	383, 404
TfiI	GAWTC	1 cut(s)	611
Tru1I	TTAA	2 cut(s)	219, 231
Tru9I	TTAA	2 cut(s)	219, 231
TscAI	CASTG	3 cut(s)	37, 302, 703
TspDTI	ATGAA	2 cut(s)	603, 750
TspRI	CASTG	3 cut(s)	37, 302, 703
VspI	ATTAAT	1 cut(s)	231
XagI	CCTNNNNNAGG	1 cut(s)	548
XapI	RAATTY	2 cut(s)	64, 345
XceI	RCATGY	1 cut(s)	655
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XhoI	CTCGAG	1 cut(s)	384
XspI	CTAG	2 cut(s)	122, 449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.