Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003146

Physical Location & Seq

Genomic Coordinates Reverse (-)

19632045 .. 19632798

Gene Structure 754 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G018280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGAATCAGCAAGAACTCACAAGGGGGAGCGGAAAAGGGTGAGCAATGGGAGTGAAGAAGGCAGTAAGCAGAAACCAATGTATAGAGGAGTTCGAATGCGTGAATGGGGAAAATGGGTATCAGAAATCAGAGAGCCAAGAAAGAAGTCGAGAATATGGCTCGGAACGTTTGCTACAGCCGAAATGGCAGCTCGAGCTCACGACGTTGCAGCTCTGACTATCAAAGGCCGCTCGGCTTATCTCAACTTCCCTGAGCTAGCTCAGGAACTTCCTTGTGCCGCTAGCTCATTGCCGAAAGACATTCAAGCTGCTGCAGCTAAAGCTGCTGCTCTTAGCTACCCTAGCTGCAGCAGCAGCAGCAGTCATGAATCCAAAACCGAACCGGCTCAAGATTCATCGTCTTCATCAAAAAATGAAGATGACTCGTTTTTTGACCTTCCTGATCTGCTGTTAGACGTTGGAAATTATCGTAGTACTCACGAGTGTTTTTCGCTTGTGGATGCAAGTCTCAGCATAGAAGAGCCTTTCTTATGGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

179

Amino Acids

19.8

Weight (kDa)

6.12

Isoelectric Point (pI)

56.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	27 - 76	1.4e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77200 AT2G25820 AT2G35700 AT3G16280 AT3G16280 AT3G60490 AT4G16750 AT4G32800
fragaria_vesca	FvH4_5g19440 FvH4_5g19460
malus_domestica	MD04G1060400.v1.1 MD06G1053600.v1.1
prunus_persica	Prupe.5G065300_v2.0.a1
pyrus_communis	pycom04g05400 pycom06g04520
rosa_chinensis	RchiOBHm_Chr7g0203971 RchiOBHm_Chr7g0204031
rosa_laevigata	RLG00000003493 RLG00000003495
rosa_multiflora	Rmu_sc0001311.1_g000005 Rmu_sc0001843.1_g000006 Rmu_sc0004074.1_g000008
rosa_roxburghii	Rroxscaffold_3G00253410 Rroxscaffold_3G00253430
rosa_rugosa	Rorug07G0074800 Rorug07G0079700 Rorug07G0080000
rosa_samantha	Rh7AG209700 Rh7AG210000 Rh7BG203400 Rh7BG208400 Rh7BG208500 Rh7CG222200 Rh7CG222500 Rh7DG216700
rosa_wichuraiana	Rw7G018260 Rw7G018280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	31, 231
AciI	CCGC	3 cut(s)	31, 229, 279
AclI	AACGTT	1 cut(s)	167
AfaI	GTAC	1 cut(s)	475
AgsI	TTSAA	1 cut(s)	305
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	1 cut(s)	512
Ama87I	CYCGRG	1 cut(s)	192
AoxI	GGCC	1 cut(s)	226
ArsI	GACNNNNNNTTYG	2 cut(s)	413, 445
AsuHPI	GGTGA	1 cut(s)	52
AsuII	TTCGAA	1 cut(s)	94
AsuNHI	GCTAGC	2 cut(s)	256, 281
AvaI	CYCGRG	1 cut(s)	192
BanII	GRGCYC	1 cut(s)	199
BauI	CACGAG	1 cut(s)	479
BbsI	GAAGAC	1 cut(s)	393
Bbv12I	GWGCWC	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	512
BfaI	CTAG	3 cut(s)	257, 282, 342
BfmI	CTRYAG	3 cut(s)	174, 312, 346
BglI	GCCNNNNNGGC	1 cut(s)	185
BmcAI	AGTACT	1 cut(s)	475
BmeT110I	CYCGRG	1 cut(s)	192
BmsI	GCATC	1 cut(s)	490
BmtI	GCTAGC	2 cut(s)	260, 285
BpiI	GAAGAC	1 cut(s)	393
Bpu10I	CCTNAGC	2 cut(s)	252, 261
Bpu14I	TTCGAA	1 cut(s)	94
BpuEI	CTTGAG	1 cut(s)	372
Bse118I	RCCGGY	1 cut(s)	382
Bse3DI	GCAATG	2 cut(s)	52, 287
BseGI	GGATG	1 cut(s)	505
BseMI	GCAATG	2 cut(s)	52, 287
BseMII	CTCAG	3 cut(s)	243, 275, 523
BseRI	GAGGAG	1 cut(s)	102
BshFI	GGCC	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	199
BsiHKCI	CYCGRG	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	383
BsmAI	GTCTC	1 cut(s)	512
BsmI	GAATGC	1 cut(s)	102
BsnI	GGCC	1 cut(s)	228
BsoBI	CYCGRG	1 cut(s)	192
Bsp119I	TTCGAA	1 cut(s)	94
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	1 cut(s)	442
BspACI	CCGC	3 cut(s)	31, 229, 279
BspANI	GGCC	1 cut(s)	228
BspCNI	CTCAG	3 cut(s)	244, 274, 522
BspHI	TCATGA	1 cut(s)	364
BspMAI	CTGCAG	2 cut(s)	316, 350
BspOI	GCTAGC	2 cut(s)	260, 285
BspQI	GCTCTTC	1 cut(s)	513
BspT104I	TTCGAA	1 cut(s)	94
BsrBI	CCGCTC	2 cut(s)	31, 231
BsrDI	GCAATG	2 cut(s)	52, 287
BsrFI	RCCGGY	1 cut(s)	382
BssAI	RCCGGY	1 cut(s)	382
BssMI	GATC	1 cut(s)	442
BssSI	CACGAG	1 cut(s)	479
Bst2BI	CACGAG	1 cut(s)	479
Bst6I	CTCTTC	1 cut(s)	513
BstBI	TTCGAA	1 cut(s)	94
BstC8I	GCNNGC	2 cut(s)	258, 283
BstDEI	CTNAG	4 cut(s)	252, 261, 332, 509
BstF5I	GGATG	1 cut(s)	505
BstKTI	GATC	1 cut(s)	445
BstMAI	GTCTC	1 cut(s)	512
BstMBI	GATC	1 cut(s)	442
BstMWI	GCNNNNNNNGC	9 cut(s)	185, 194, 314, 320, 323, 342, 351, 354, 357
BstSFI	CTRYAG	3 cut(s)	174, 312, 346
BstV2I	GAAGAC	1 cut(s)	393
BsuRI	GGCC	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	505
Cac8I	GCNNGC	2 cut(s)	258, 283
CciI	TCATGA	1 cut(s)	364
Cfr10I	RCCGGY	1 cut(s)	382
Csp6I	GTAC	1 cut(s)	474
CviAII	CATG	1 cut(s)	365
CviQI	GTAC	1 cut(s)	474
DdeI	CTNAG	4 cut(s)	252, 261, 332, 509
DpnI	GATC	1 cut(s)	444
DpnII	GATC	1 cut(s)	442
Eam1104I	CTCTTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	513
Ecl136II	GAGCTC	1 cut(s)	197
Eco24I	GRGCYC	1 cut(s)	199
Eco53kI	GAGCTC	1 cut(s)	197
Eco88I	CYCGRG	1 cut(s)	192
EcoICRI	GAGCTC	1 cut(s)	197
EcoT38I	GRGCYC	1 cut(s)	199
FaeI	CATG	1 cut(s)	368
FaiI	YATR	5 cut(s)	84, 157, 366, 515, 532
FatI	CATG	1 cut(s)	364
FokI	GGATG	1 cut(s)	512
FriOI	GRGCYC	1 cut(s)	199
FspBI	CTAG	3 cut(s)	257, 282, 342
HaeIII	GGCC	1 cut(s)	228
HapII	CCGG	1 cut(s)	383
Hin1II	CATG	1 cut(s)	368
HinfI	GANTC	4 cut(s)	5, 368, 392, 422
HpaII	CCGG	1 cut(s)	383
HphI	GGTGA	1 cut(s)	52
Hpy188I	TCNGA	4 cut(s)	124, 131, 164, 216
Hpy188III	TCNNGA	7 cut(s)	150, 200, 263, 365, 389, 440, 479
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	2 cut(s)	53, 446
HpyCH4IV	ACGT	3 cut(s)	167, 204, 456
HpyCH4V	TGCA	4 cut(s)	209, 314, 348, 503
HpyF10VI	GCNNNNNNNGC	9 cut(s)	185, 194, 314, 320, 323, 342, 351, 354, 357
HpyF3I	CTNAG	4 cut(s)	252, 261, 332, 509
HpySE526I	ACGT	3 cut(s)	167, 204, 456
Hsp92II	CATG	1 cut(s)	368
Kzo9I	GATC	1 cut(s)	442
LguI	GCTCTTC	1 cut(s)	513
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	4 cut(s)	248, 264, 396, 453
LweI	GCATC	1 cut(s)	490
MaeI	CTAG	3 cut(s)	257, 282, 342
MaeII	ACGT	3 cut(s)	167, 204, 456
MalI	GATC	1 cut(s)	444
MbiI	CCGCTC	2 cut(s)	31, 231
MboI	GATC	1 cut(s)	442
MboII	GAAGA	4 cut(s)	68, 393, 428, 530
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	1 cut(s)	463
MlyI	GAGTC	1 cut(s)	416
MmeI	TCCRAC	1 cut(s)	439
MnlI	CCTC	1 cut(s)	80
MspI	CCGG	1 cut(s)	383
Mva1269I	GAATGC	1 cut(s)	102
MwoI	GCNNNNNNNGC	9 cut(s)	185, 194, 314, 320, 323, 342, 351, 354, 357
NdeII	GATC	1 cut(s)	442
NheI	GCTAGC	2 cut(s)	256, 281
NlaIII	CATG	1 cut(s)	368
NmeAIII	GCCGAG	1 cut(s)	212
NspV	TTCGAA	1 cut(s)	94
PaeR7I	CTCGAG	1 cut(s)	192
PagI	TCATGA	1 cut(s)	364
PciSI	GCTCTTC	1 cut(s)	513
PctI	GAATGC	1 cut(s)	102
PfeI	GAWTC	3 cut(s)	5, 368, 392
PleI	GAGTC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	416
Psp124BI	GAGCTC	1 cut(s)	199
Psp1406I	AACGTT	1 cut(s)	167
PspXI	VCTCGAGB	1 cut(s)	192
PsrI	GAACNNNNNNTAC	2 cut(s)	157, 189
PstI	CTGCAG	2 cut(s)	316, 350
RsaI	GTAC	1 cut(s)	475
RsaNI	GTAC	1 cut(s)	474
SacI	GAGCTC	1 cut(s)	199
SapI	GCTCTTC	1 cut(s)	513
Sau3AI	GATC	1 cut(s)	442
ScaI	AGTACT	1 cut(s)	475
SchI	GAGTC	1 cut(s)	416
SduI	GDGCHC	1 cut(s)	199
SfaNI	GCATC	1 cut(s)	490
SfcI	CTRYAG	3 cut(s)	174, 312, 346
Sfr274I	CTCGAG	1 cut(s)	192
SfuI	TTCGAA	1 cut(s)	94
SlaI	CTCGAG	1 cut(s)	192
SmlI	CTYRAG	2 cut(s)	192, 387
SmoI	CTYRAG	2 cut(s)	192, 387
Sse9I	AATT	1 cut(s)	463
SsiI	CCGC	3 cut(s)	31, 229, 279
SspMI	CTAG	3 cut(s)	257, 282, 342
SstI	GAGCTC	1 cut(s)	199
TaiI	ACGT	3 cut(s)	170, 207, 459
TaqI	TCGA	3 cut(s)	94, 149, 193
TasI	AATT	1 cut(s)	463
TatI	WGTACW	1 cut(s)	473
TauI	GCSGC	2 cut(s)	231, 281
TfiI	GAWTC	3 cut(s)	5, 368, 392
TspDTI	ATGAA	4 cut(s)	381, 384, 393, 429
XhoI	CTCGAG	1 cut(s)	192
XspI	CTAG	3 cut(s)	257, 282, 342
ZrmI	AGTACT	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.