Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003146

Physical Location & Seq

Genomic Coordinates Forward (+)

5518211 .. 5519271

Gene Structure 1061 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G16280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGACGTCACTCAACAGCTCTGCATCACCAACATCATCGTCATCAGACCAATCTGATGCAACTACTACAACAAGCACCCACTTGTCTGAAGAAGAAGCTCCACCCAGAAACAACAACACAAGAAAGAGAAGGAGAGATTCTTCTTCTGCTTCTTCATCTTCTTCAATGCAACATCCTGTTTACAGAGGTGTGCGGATGAGAAGTTGGGGCAAATGGGTCTCCGAGATCCGACAACCTCGTAAGAAAACTCGTATTTGGCTCGGCACTTTTGTCACCGCTGATATGGCTGCTCGTGCTCACGACGTCGCTGCTCTCACCATCAAAGGCTCCTCCGCCGTCTTAAATTTCCCTGAGCTTGCTTCTCTCTTCCCTCGTCCGGCGTCATCATCGCCGCATGATATCCAGACAGCCGCCGCAGAAGCCGCCGCCATGGTGGTCGAAGAAAAACTGTTAGAGAAGGATGAGGCTCCGGAGGCCCCACCTTCGTCGGAATCTTCTTACGTGGCGGCGGAGTCAGAGGATGAGGAGAGGTTGGAGAAAATTGTGGAGCTGCCTAACATTGAAGAAGGAAGTTATGACGAGAGTGTGACATCACGTGCTGATCTGGCTTATTCTGAGCCGTTCGATTGTTGGGTGTATCCTCCGGTTATGGATTTTTATGAAGAAATATCGGAGTTTAATTTCGTGGAATTGTGGAGCTTTAATCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

236

Amino Acids

26.2

Weight (kDa)

4.78

Isoelectric Point (pI)

71.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	59 - 109	3.1e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77200 AT2G25820 AT2G35700 AT3G16280 AT3G16280 AT3G60490 AT4G16750 AT4G32800
fragaria_vesca	FvH4_5g19440 FvH4_5g19460
malus_domestica	MD04G1060400.v1.1 MD06G1053600.v1.1
prunus_persica	Prupe.5G065300_v2.0.a1
pyrus_communis	pycom04g05400 pycom06g04520
rosa_chinensis	RchiOBHm_Chr7g0203971 RchiOBHm_Chr7g0204031
rosa_laevigata	RLG00000003493 RLG00000003495
rosa_multiflora	Rmu_sc0001311.1_g000005 Rmu_sc0001843.1_g000006 Rmu_sc0004074.1_g000008
rosa_roxburghii	Rroxscaffold_3G00253410 Rroxscaffold_3G00253430
rosa_rugosa	Rorug07G0074800 Rorug07G0079700 Rorug07G0080000
rosa_samantha	Rh7AG209700 Rh7AG210000 Rh7BG203400 Rh7BG208400 Rh7BG208500 Rh7CG222200 Rh7CG222500 Rh7DG216700
rosa_wichuraiana	Rw7G018260 Rw7G018280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	8, 306
AccIII	TCCGGA	1 cut(s)	469
AclWI	GGATC	1 cut(s)	220
AcsI	RAATTY	1 cut(s)	343
AcuI	CTGAAG	1 cut(s)	108
AcvI	CACGTG	1 cut(s)	596
AcyI	GRCGYC	3 cut(s)	5, 303, 380
AfiI	CCNNNNNNNGG	1 cut(s)	376
AgsI	TTSAA	2 cut(s)	165, 563
AluBI	AGCT	5 cut(s)	18, 98, 355, 550, 699
AluI	AGCT	5 cut(s)	18, 98, 355, 550, 699
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	1 cut(s)	223
AlwI	GGATC	1 cut(s)	220
Aor13HI	TCCGGA	1 cut(s)	469
AoxI	GGCC	1 cut(s)	474
ApeKI	GCWGC	3 cut(s)	287, 308, 550
ApoI	RAATTY	1 cut(s)	343
AspS9I	GGNCC	1 cut(s)	475
AsuHPI	GGTGA	3 cut(s)	18, 265, 307
BauI	CACGAG	1 cut(s)	291
BbrPI	CACGTG	1 cut(s)	596
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	3 cut(s)	274, 295, 537
BccI	CCATC	1 cut(s)	326
BceAI	ACGGC	2 cut(s)	320, 604
BcgI	CGANNNNNNTGC	2 cut(s)	290, 324
BciVI	GTATCC	1 cut(s)	648
BcoDI	GTCTC	1 cut(s)	223
BfuI	GTATCC	1 cut(s)	648
BisI	GCNGC	9 cut(s)	288, 309, 392, 411, 414, 423, 426, 507, 551
BlsI	GCNGC	9 cut(s)	289, 310, 393, 412, 415, 424, 427, 508, 552
BmgT120I	GGNCC	1 cut(s)	475
BmiI	GGNNCC	3 cut(s)	328, 468, 477
BmsI	GCATC	2 cut(s)	32, 46
Bpu10I	CCTNAGC	1 cut(s)	351
BsaAI	YACGTR	2 cut(s)	502, 596
BsaHI	GRCGYC	3 cut(s)	5, 303, 380
BsaI	GGTCTC	1 cut(s)	223
BsaJI	CCNNGG	1 cut(s)	429
BsaWI	WCCGGW	2 cut(s)	469, 643
Bsc4I	CCNNNNNNNGG	1 cut(s)	376
BseAI	TCCGGA	1 cut(s)	469
BseDI	CCNNGG	1 cut(s)	429
BseGI	GGATG	4 cut(s)	172, 201, 466, 526
BseLI	CCNNNNNNNGG	1 cut(s)	376
BseMII	CTCAG	2 cut(s)	342, 606
BseRI	GAGGAG	2 cut(s)	319, 539
BseXI	GCAGC	3 cut(s)	274, 295, 537
BshFI	GGCC	1 cut(s)	476
BsiHKAI	GWGCWC	1 cut(s)	298
BsiSI	CCGG	3 cut(s)	377, 470, 644
BslI	CCNNNNNNNGG	1 cut(s)	376
BsmAI	GTCTC	1 cut(s)	223
BsnI	GGCC	1 cut(s)	476
Bso31I	GGTCTC	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp13I	TCCGGA	1 cut(s)	469
Bsp143I	GATC	2 cut(s)	225, 601
Bsp19I	CCATGG	1 cut(s)	429
BspANI	GGCC	1 cut(s)	476
BspCNI	CTCAG	2 cut(s)	343, 607
BspEI	TCCGGA	1 cut(s)	469
BspLI	GGNNCC	3 cut(s)	328, 468, 477
BspPI	GGATC	1 cut(s)	220
BspTNI	GGTCTC	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	2 cut(s)	225, 601
BssNI	GRCGYC	3 cut(s)	5, 303, 380
BssSI	CACGAG	1 cut(s)	291
BssT1I	CCWWGG	1 cut(s)	429
Bst2BI	CACGAG	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	450
Bst6I	CTCTTC	1 cut(s)	371
BstACI	GRCGYC	3 cut(s)	5, 303, 380
BstBAI	YACGTR	2 cut(s)	502, 596
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	2 cut(s)	351, 615
BstDSI	CCRYGG	1 cut(s)	429
BstF5I	GGATG	4 cut(s)	172, 201, 466, 526
BstKTI	GATC	2 cut(s)	228, 604
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	2 cut(s)	225, 601
BstMWI	GCNNNNNNNGC	6 cut(s)	284, 293, 419, 422, 473, 605
BstV1I	GCAGC	3 cut(s)	274, 295, 537
BstX2I	RGATCY	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	225
BsuI	GTATCC	1 cut(s)	648
BsuRI	GGCC	1 cut(s)	476
BtgI	CCRYGG	1 cut(s)	429
BtgZI	GCGATG	1 cut(s)	372
BtsCI	GGATG	4 cut(s)	172, 201, 466, 526
Cac8I	GCNNGC	1 cut(s)	357
Cfr13I	GGNCC	1 cut(s)	475
CseI	GACGC	1 cut(s)	369
CviAII	CATG	2 cut(s)	395, 430
DdeI	CTNAG	2 cut(s)	351, 615
DpnI	GATC	2 cut(s)	227, 603
DpnII	GATC	2 cut(s)	225, 601
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
EciI	GGCGGA	2 cut(s)	322, 524
Eco130I	CCWWGG	1 cut(s)	429
Eco31I	GGTCTC	1 cut(s)	223
Eco32I	GATATC	1 cut(s)	400
Eco57I	CTGAAG	1 cut(s)	108
Eco72I	CACGTG	1 cut(s)	596
EcoO109I	RGGNCCY	1 cut(s)	475
EcoRV	GATATC	1 cut(s)	400
EcoT14I	CCWWGG	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	429
FaeI	CATG	2 cut(s)	398, 433
FaiI	YATR	6 cut(s)	284, 396, 431, 576, 650, 660
FatI	CATG	2 cut(s)	394, 429
Fnu4HI	GCNGC	9 cut(s)	288, 309, 392, 411, 414, 423, 426, 507, 551
FokI	GGATG	4 cut(s)	159, 208, 473, 533
Fsp4HI	GCNGC	9 cut(s)	288, 309, 392, 411, 414, 423, 426, 507, 551
GluI	GCNGC	9 cut(s)	288, 309, 392, 411, 414, 423, 426, 507, 551
HaeIII	GGCC	1 cut(s)	476
HapII	CCGG	3 cut(s)	377, 470, 644
HgaI	GACGC	1 cut(s)	369
Hin1I	GRCGYC	3 cut(s)	5, 303, 380
Hin1II	CATG	2 cut(s)	398, 433
HinfI	GANTC	3 cut(s)	137, 491, 512
HpaII	CCGG	3 cut(s)	377, 470, 644
HphI	GGTGA	3 cut(s)	18, 265, 307
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	9 cut(s)	46, 55, 88, 223, 230, 490, 517, 616, 673
Hpy188III	TCNNGA	3 cut(s)	299, 403, 470
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	3 cut(s)	305, 308, 490
HpyAV	CCTTC	4 cut(s)	123, 451, 492, 560
HpyCH4III	ACNGT	1 cut(s)	450
HpyCH4IV	ACGT	4 cut(s)	5, 303, 501, 595
HpyCH4V	TGCA	3 cut(s)	23, 59, 169
HpyF10VI	GCNNNNNNNGC	6 cut(s)	284, 293, 419, 422, 473, 605
HpyF3I	CTNAG	2 cut(s)	351, 615
HpySE526I	ACGT	4 cut(s)	5, 303, 501, 595
Hsp92I	GRCGYC	3 cut(s)	5, 303, 380
Hsp92II	CATG	2 cut(s)	398, 433
Kpn2I	TCCGGA	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	225, 601
LmnI	GCTCC	5 cut(s)	103, 332, 472, 547, 696
LpnPI	CCDG	8 cut(s)	118, 189, 363, 390, 416, 483, 590, 657
Lsp1109I	GCAGC	3 cut(s)	274, 295, 537
LweI	GCATC	2 cut(s)	32, 46
MaeII	ACGT	4 cut(s)	5, 303, 501, 595
MaeIII	GTNAC	3 cut(s)	6, 271, 586
MalI	GATC	2 cut(s)	227, 603
MboI	GATC	2 cut(s)	225, 601
MflI	RGATCY	1 cut(s)	225
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	4 cut(s)	343, 540, 679, 689
MlyI	GAGTC	1 cut(s)	521
MmeI	TCCRAC	3 cut(s)	253, 468, 513
MroI	TCCGGA	1 cut(s)	469
MseI	TTAA	3 cut(s)	341, 678, 702
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	3 cut(s)	377, 470, 644
MwoI	GCNNNNNNNGC	6 cut(s)	284, 293, 419, 422, 473, 605
NcoI	CCATGG	1 cut(s)	429
NdeII	GATC	2 cut(s)	225, 601
NlaIII	CATG	2 cut(s)	398, 433
NlaIV	GGNNCC	3 cut(s)	328, 468, 477
NmeAIII	GCCGAG	1 cut(s)	240
NmuCI	GTSAC	3 cut(s)	6, 271, 586
PfeI	GAWTC	2 cut(s)	137, 491
PkrI	GCNGC	9 cut(s)	289, 310, 393, 412, 415, 424, 427, 508, 552
PleI	GAGTC	1 cut(s)	520
PmaCI	CACGTG	1 cut(s)	596
PmlI	CACGTG	1 cut(s)	596
PpsI	GAGTC	1 cut(s)	520
Ppu21I	YACGTR	2 cut(s)	502, 596
PspCI	CACGTG	1 cut(s)	596
PspN4I	GGNNCC	3 cut(s)	328, 468, 477
PspPI	GGNCC	1 cut(s)	475
PsuI	RGATCY	1 cut(s)	225
SaqAI	TTAA	3 cut(s)	341, 678, 702
SatI	GCNGC	9 cut(s)	288, 309, 392, 411, 414, 423, 426, 507, 551
Sau3AI	GATC	2 cut(s)	225, 601
Sau96I	GGNCC	1 cut(s)	475
SchI	GAGTC	1 cut(s)	521
SduI	GDGCHC	1 cut(s)	298
SfaNI	GCATC	2 cut(s)	32, 46
Sse9I	AATT	4 cut(s)	343, 540, 679, 689
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	1 cut(s)	450
TaiI	ACGT	4 cut(s)	8, 306, 504, 598
TaqI	TCGA	2 cut(s)	438, 624
TasI	AATT	4 cut(s)	343, 540, 679, 689
TauI	GCSGC	6 cut(s)	394, 413, 416, 425, 428, 509
TfiI	GAWTC	2 cut(s)	137, 491
Tru1I	TTAA	3 cut(s)	341, 678, 702
Tru9I	TTAA	3 cut(s)	341, 678, 702
TseFI	GTSAC	3 cut(s)	6, 271, 586
TseI	GCWGC	3 cut(s)	287, 308, 550
Tsp45I	GTSAC	3 cut(s)	6, 271, 586
TspDTI	ATGAA	2 cut(s)	144, 675
XapI	RAATTY	1 cut(s)	343
ZraI	GACGTC	2 cut(s)	6, 304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.