Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003146

Physical Location & Seq

Genomic Coordinates Forward (+)

15819489 .. 15820879

Gene Structure 1391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G32800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCGGATTCGTCTTCCGACAAGGAGAAGAAGGAAAATAATAAGCAGCCCGTGTATCGTGGAGTCCGTATGAGGAGCTGGGGAAAATGGGTATCGGAGATTCGCGAACCGAGGAAGAAATCGAGAATCTGGCTCGGGACTTTTCCGACGGCGGAGATGGCTATGCGTGCTCACGACGTGGCGGCTATGAGTATCAAAGGAACTTCAGCCATTCTCAATTTCCCTGAGCTCTCTAAACTTCTTCCCCGACCCGTTTCGCTCAGCCCTCGTGACGTCAGAGCTGCGGCGACCAAAGCTGCTCTCATGGACTTCGATACGACGGCGTTTCGTTCGGATACTGAGACTAGCGAAACGACGACGTCGAATAAAATGTCAGAGAGTAGTGAGAGTAACGAAACGGTGTCGTTCTCATCGTCGTCTTGGTCCTCTGTTACGAGCATTGAGGAAAGTACAGTCTCCGACGATCTTGACGAGATCGTAAAGTTACCGAGTCTAGGAACGAGCCTAAACGAGTCGAACGAGTTCGTGATATTTGACTCGTTGGAGGATTTGGTGTACATGCCTCGGTGGTTAAGCGGTACGGAAGAAGAAGTTTTTACGTATAATAACAATGATTCTTCGTTGAATTACTCATCAGTTTTCGAATCTTGGAAACATTTTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

221

Amino Acids

24.86

Weight (kDa)

4.9

Isoelectric Point (pI)

63.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	17 - 67	3e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77200 AT2G25820 AT2G35700 AT3G16280 AT3G16280 AT3G60490 AT4G16750 AT4G32800
fragaria_vesca	FvH4_5g19440 FvH4_5g19460
malus_domestica	MD04G1060400.v1.1 MD06G1053600.v1.1
prunus_persica	Prupe.5G065300_v2.0.a1
pyrus_communis	pycom04g05400 pycom06g04520
rosa_chinensis	RchiOBHm_Chr7g0203971 RchiOBHm_Chr7g0204031
rosa_laevigata	RLG00000003493 RLG00000003495
rosa_multiflora	Rmu_sc0001311.1_g000005 Rmu_sc0001843.1_g000006 Rmu_sc0004074.1_g000008
rosa_roxburghii	Rroxscaffold_3G00253410 Rroxscaffold_3G00253430
rosa_rugosa	Rorug07G0074800 Rorug07G0079700 Rorug07G0080000
rosa_samantha	Rh7AG209700 Rh7AG210000 Rh7BG203400 Rh7BG208400 Rh7BG208500 Rh7CG222200 Rh7CG222500 Rh7DG216700
rosa_wichuraiana	Rw7G018260 Rw7G018280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	276, 362
AccII	CGCG	1 cut(s)	105
AciI	CCGC	5 cut(s)	5, 152, 182, 284, 576
AcuI	CTGAAG	1 cut(s)	189
AcyI	GRCGYC	2 cut(s)	273, 359
AdeI	CACNNNGTG	1 cut(s)	178
AfaI	GTAC	3 cut(s)	451, 557, 580
AfiI	CCNNNNNNNGG	1 cut(s)	494
AgsI	TTSAA	1 cut(s)	625
AjiI	CACGTC	1 cut(s)	178
AluBI	AGCT	4 cut(s)	78, 229, 281, 296
AluI	AGCT	4 cut(s)	78, 229, 281, 296
Alw21I	GWGCWC	2 cut(s)	172, 231
Alw26I	GTCTC	2 cut(s)	335, 460
Ama87I	CYCGRG	1 cut(s)	134
ApeKI	GCWGC	3 cut(s)	46, 281, 296
ArsI	GACNNNNNNTTYG	2 cut(s)	356, 388
Asp700I	GAANNNNTTC	1 cut(s)	521
AspS9I	GGNCC	1 cut(s)	423
AsuII	TTCGAA	1 cut(s)	642
AvaI	CYCGRG	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	423
BanII	GRGCYC	1 cut(s)	231
BauI	CACGAG	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	6
Bbv12I	GWGCWC	2 cut(s)	172, 231
BbvI	GCAGC	3 cut(s)	58, 268, 283
BccI	CCATC	1 cut(s)	151
BceAI	ACGGC	2 cut(s)	165, 336
BciVI	GTATCC	1 cut(s)	328
BcoDI	GTCTC	2 cut(s)	335, 460
BfaI	CTAG	2 cut(s)	345, 494
BfuI	GTATCC	1 cut(s)	328
BisI	GCNGC	5 cut(s)	47, 183, 282, 285, 297
BlpI	GCTNAGC	1 cut(s)	260
BlsI	GCNGC	5 cut(s)	48, 184, 283, 286, 298
Bme18I	GGWCC	1 cut(s)	423
BmeT110I	CYCGRG	1 cut(s)	134
BmgBI	CACGTC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	423
BpiI	GAAGAC	1 cut(s)	6
Bpu10I	CCTNAGC	1 cut(s)	225
Bpu1102I	GCTNAGC	1 cut(s)	260
Bpu14I	TTCGAA	1 cut(s)	642
BsaAI	YACGTR	1 cut(s)	600
BsaHI	GRCGYC	2 cut(s)	273, 359
BsaJI	CCNNGG	2 cut(s)	110, 563
Bsc4I	CCNNNNNNNGG	1 cut(s)	494
BseDI	CCNNGG	2 cut(s)	110, 563
BseLI	CCNNNNNNNGG	1 cut(s)	494
BseMII	CTCAG	3 cut(s)	216, 274, 330
BseRI	GAGGAG	1 cut(s)	88
BseXI	GCAGC	3 cut(s)	58, 268, 283
BseYI	CCCAGC	1 cut(s)	78
Bsh1236I	CGCG	1 cut(s)	105
BsiHKAI	GWGCWC	2 cut(s)	172, 231
BsiHKCI	CYCGRG	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	494
BsmAI	GTCTC	2 cut(s)	335, 460
BsmFI	GGGAC	1 cut(s)	151
BsoBI	CYCGRG	1 cut(s)	134
Bsp119I	TTCGAA	1 cut(s)	642
Bsp1286I	GDGCHC	2 cut(s)	172, 231
Bsp1407I	TGTACA	1 cut(s)	555
Bsp143I	GATC	2 cut(s)	463, 474
Bsp1720I	GCTNAGC	1 cut(s)	260
Bsp68I	TCGCGA	1 cut(s)	105
BspACI	CCGC	5 cut(s)	5, 152, 182, 284, 576
BspCNI	CTCAG	3 cut(s)	217, 273, 331
BspFNI	CGCG	1 cut(s)	105
BspT104I	TTCGAA	1 cut(s)	642
BsrGI	TGTACA	1 cut(s)	555
BssECI	CCNNGG	2 cut(s)	110, 563
BssMI	GATC	2 cut(s)	463, 474
BssNI	GRCGYC	2 cut(s)	273, 359
BssSI	CACGAG	1 cut(s)	267
Bst2BI	CACGAG	1 cut(s)	267
Bst4CI	ACNGT	2 cut(s)	400, 454
BstACI	GRCGYC	2 cut(s)	273, 359
BstAUI	TGTACA	1 cut(s)	555
BstBAI	YACGTR	1 cut(s)	600
BstBI	TTCGAA	1 cut(s)	642
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	3 cut(s)	225, 260, 339
BstFNI	CGCG	1 cut(s)	105
BstKTI	GATC	2 cut(s)	466, 477
BstMAI	GTCTC	2 cut(s)	335, 460
BstMBI	GATC	2 cut(s)	463, 474
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 167, 293
BstNSI	RCATGY	1 cut(s)	562
BstSNI	TACGTA	1 cut(s)	600
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	3 cut(s)	58, 268, 283
BstV2I	GAAGAC	1 cut(s)	6
BsuI	GTATCC	1 cut(s)	328
BtrI	CACGTC	1 cut(s)	178
BtuMI	TCGCGA	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	423
Csp6I	GTAC	3 cut(s)	450, 556, 579
CviAII	CATG	2 cut(s)	304, 559
CviQI	GTAC	3 cut(s)	450, 556, 579
DdeI	CTNAG	3 cut(s)	225, 260, 339
DpnI	GATC	2 cut(s)	465, 476
DpnII	GATC	2 cut(s)	463, 474
DraIII	CACNNNGTG	1 cut(s)	178
EciI	GGCGGA	2 cut(s)	20, 167
Ecl136II	GAGCTC	1 cut(s)	229
Eco105I	TACGTA	1 cut(s)	600
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	423
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	229
EcoT38I	GRGCYC	1 cut(s)	231
FaeI	CATG	2 cut(s)	307, 562
FaiI	YATR	6 cut(s)	71, 164, 188, 305, 560, 603
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	2 cut(s)	303, 558
Fnu4HI	GCNGC	5 cut(s)	47, 183, 282, 285, 297
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	5 cut(s)	47, 183, 282, 285, 297
FspBI	CTAG	2 cut(s)	345, 494
GluI	GCNGC	5 cut(s)	47, 183, 282, 285, 297
GsaI	CCCAGC	1 cut(s)	82
Hin1I	GRCGYC	2 cut(s)	273, 359
Hin1II	CATG	2 cut(s)	307, 562
HinfI	GANTC	9 cut(s)	8, 63, 100, 126, 490, 512, 536, 614, 644
Hpy166II	GTNNAC	1 cut(s)	556
Hpy188I	TCNGA	7 cut(s)	19, 97, 147, 278, 334, 376, 460
Hpy188III	TCNNGA	7 cut(s)	104, 123, 136, 173, 269, 467, 526
Hpy8I	GTNNAC	1 cut(s)	556
Hpy99I	CGWCG	8 cut(s)	151, 179, 322, 358, 361, 364, 418, 464
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	2 cut(s)	400, 454
HpyCH4IV	ACGT	4 cut(s)	177, 273, 359, 599
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 167, 293
HpyF3I	CTNAG	3 cut(s)	225, 260, 339
HpySE526I	ACGT	4 cut(s)	177, 273, 359, 599
Hsp92I	GRCGYC	2 cut(s)	273, 359
Hsp92II	CATG	2 cut(s)	307, 562
Kzo9I	GATC	2 cut(s)	463, 474
LmnI	GCTCC	1 cut(s)	75
LpnPI	CCDG	3 cut(s)	64, 115, 237
Lsp1109I	GCAGC	3 cut(s)	58, 268, 283
MaeI	CTAG	2 cut(s)	345, 494
MaeII	ACGT	4 cut(s)	177, 273, 359, 599
MaeIII	GTNAC	4 cut(s)	269, 389, 430, 483
MalI	GATC	2 cut(s)	465, 476
MboI	GATC	2 cut(s)	463, 474
MboII	GAAGA	7 cut(s)	6, 40, 127, 233, 596, 599, 609
MhlI	GDGCHC	2 cut(s)	172, 231
MluCI	AATT	2 cut(s)	217, 625
MlyI	GAGTC	4 cut(s)	72, 499, 521, 530
MmeI	TCCRAC	4 cut(s)	42, 170, 483, 522
MnlI	CCTC	7 cut(s)	66, 105, 276, 436, 436, 538, 573
MroXI	GAANNNNTTC	1 cut(s)	521
MseI	TTAA	1 cut(s)	572
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	3 cut(s)	158, 167, 293
NdeII	GATC	2 cut(s)	463, 474
NlaIII	CATG	2 cut(s)	307, 562
NmuCI	GTSAC	1 cut(s)	269
NruI	TCGCGA	1 cut(s)	105
NspI	RCATGY	1 cut(s)	562
NspV	TTCGAA	1 cut(s)	642
PcsI	WCGNNNNNNNCGW	5 cut(s)	64, 359, 410, 468, 516
PdmI	GAANNNNTTC	1 cut(s)	521
PfeI	GAWTC	5 cut(s)	8, 100, 126, 614, 644
PflFI	GACNNNGTC	1 cut(s)	358
PkrI	GCNGC	5 cut(s)	48, 184, 283, 286, 298
PleI	GAGTC	4 cut(s)	71, 498, 520, 530
PpsI	GAGTC	4 cut(s)	71, 498, 520, 530
Ppu21I	YACGTR	1 cut(s)	600
Psp124BI	GAGCTC	1 cut(s)	231
PspFI	CCCAGC	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	423
PsyI	GACNNNGTC	1 cut(s)	358
RruI	TCGCGA	1 cut(s)	105
RsaI	GTAC	3 cut(s)	451, 557, 580
RsaNI	GTAC	3 cut(s)	450, 556, 579
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	572
SatI	GCNGC	5 cut(s)	47, 183, 282, 285, 297
Sau3AI	GATC	2 cut(s)	463, 474
Sau96I	GGNCC	1 cut(s)	423
SchI	GAGTC	4 cut(s)	72, 499, 521, 530
SduI	GDGCHC	2 cut(s)	172, 231
SetI	ASST	8 cut(s)	80, 180, 231, 276, 283, 298, 362, 602
SfuI	TTCGAA	1 cut(s)	642
SinI	GGWCC	1 cut(s)	423
SnaBI	TACGTA	1 cut(s)	600
Sse9I	AATT	2 cut(s)	217, 625
SsiI	CCGC	5 cut(s)	5, 152, 182, 284, 576
SspMI	CTAG	2 cut(s)	345, 494
SstI	GAGCTC	1 cut(s)	231
TaaI	ACNGT	2 cut(s)	400, 454
TaiI	ACGT	4 cut(s)	180, 276, 362, 602
TaqI	TCGA	5 cut(s)	122, 312, 362, 515, 642
TasI	AATT	2 cut(s)	217, 625
TatI	WGTACW	2 cut(s)	449, 555
TauI	GCSGC	2 cut(s)	185, 287
TfiI	GAWTC	5 cut(s)	8, 100, 126, 614, 644
Tru1I	TTAA	1 cut(s)	572
Tru9I	TTAA	1 cut(s)	572
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	3 cut(s)	46, 281, 296
Tsp45I	GTSAC	1 cut(s)	269
TspGWI	ACGGA	2 cut(s)	56, 596
Tth111I	GACNNNGTC	1 cut(s)	358
VpaK11BI	GGWCC	1 cut(s)	423
XceI	RCATGY	1 cut(s)	562
XmnI	GAANNNNTTC	1 cut(s)	521
XspI	CTAG	2 cut(s)	345, 494
ZraI	GACGTC	2 cut(s)	274, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.