Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003146

Physical Location & Seq

Genomic Coordinates Reverse (-)

16968428 .. 16968964

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG203400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGAATCAGCAAGAACTCAAAAAGAGGAGCGGAAAAGAGTGAGCAATGGGAGTGAGGAAGGCAGTAAGCAGAAACCAATGTATAGAGGAGTTCGAATGCGTCAATGGGGAAAATGGGTATCAGAAATCAGAGAGCCAAGAAAGAAGTCGAGAATATGGCTCGGAACGTTTATTACGGCCGAAATGGCAGCTCGAGCTCACGACGTTGCAGCTCTGACGATCAAAGGCCGCTCGGCTCATCTCAACTTCCCTGAGCTAGCTCAGGAACTTCCTTGTGCCGCTAGCTCATCGCCGAAAGACATTCAAGCTGCTGCAGCTAAAGCTGCTGCTCTTAGCTACCCTAGATGCAGCAGTAGCAGTCATGAATCCAAAACCGAACCGGCTCAAGATTCATCATCTTCATCAATAATAAATGATGACACGTTTTCTGACCTTCCTGATCTGCTGTTAGATGTTGGAAAATATCGTAGTAATCATGAGTATTTTTCGCTTGTGGATACAAGTCTCGGGCTAGAAAAGCCTTTCTTATGGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

178

Amino Acids

19.85

Weight (kDa)

8.52

Isoelectric Point (pI)

45.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	27 - 76	2.6e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77200 AT2G25820 AT2G35700 AT3G16280 AT3G16280 AT3G60490 AT4G16750 AT4G32800
fragaria_vesca	FvH4_5g19440 FvH4_5g19460
malus_domestica	MD04G1060400.v1.1 MD06G1053600.v1.1
prunus_persica	Prupe.5G065300_v2.0.a1
pyrus_communis	pycom04g05400 pycom06g04520
rosa_chinensis	RchiOBHm_Chr7g0203971 RchiOBHm_Chr7g0204031
rosa_laevigata	RLG00000003493 RLG00000003495
rosa_multiflora	Rmu_sc0001311.1_g000005 Rmu_sc0001843.1_g000006 Rmu_sc0004074.1_g000008
rosa_roxburghii	Rroxscaffold_3G00253410 Rroxscaffold_3G00253430
rosa_rugosa	Rorug07G0074800 Rorug07G0079700 Rorug07G0080000
rosa_samantha	Rh7AG209700 Rh7AG210000 Rh7BG203400 Rh7BG208400 Rh7BG208500 Rh7CG222200 Rh7CG222500 Rh7DG216700
rosa_wichuraiana	Rw7G018260 Rw7G018280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	31, 231
AciI	CCGC	3 cut(s)	31, 229, 279
AclI	AACGTT	1 cut(s)	167
AcoI	YGGCCR	1 cut(s)	177
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	1 cut(s)	305
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	1 cut(s)	509
Ama87I	CYCGRG	2 cut(s)	192, 506
AoxI	GGCC	2 cut(s)	177, 226
ApeKI	GCWGC	8 cut(s)	188, 209, 308, 311, 314, 323, 326, 348
AsuII	TTCGAA	1 cut(s)	94
AsuNHI	GCTAGC	2 cut(s)	256, 281
AvaI	CYCGRG	2 cut(s)	192, 506
BanII	GRGCYC	1 cut(s)	199
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	8 cut(s)	200, 221, 295, 298, 310, 313, 326, 360
BceAI	ACGGC	1 cut(s)	192
BciVI	GTATCC	1 cut(s)	490
BcoDI	GTCTC	1 cut(s)	509
BfaI	CTAG	4 cut(s)	257, 282, 342, 512
BfmI	CTRYAG	1 cut(s)	312
BfuI	GTATCC	1 cut(s)	490
BglI	GCCNNNNNGGC	1 cut(s)	185
BmeT110I	CYCGRG	2 cut(s)	192, 506
BmsI	GCATC	1 cut(s)	335
BmtI	GCTAGC	2 cut(s)	260, 285
Bpu10I	CCTNAGC	2 cut(s)	252, 261
Bpu14I	TTCGAA	1 cut(s)	94
BpuEI	CTTGAG	1 cut(s)	369
Bse118I	RCCGGY	1 cut(s)	379
Bse3DI	GCAATG	1 cut(s)	52
BseMI	GCAATG	1 cut(s)	52
BseMII	CTCAG	2 cut(s)	243, 275
BseRI	GAGGAG	2 cut(s)	41, 102
BseX3I	CGGCCG	1 cut(s)	177
BseXI	GCAGC	8 cut(s)	200, 221, 295, 298, 310, 313, 326, 360
Bsh1285I	CGRYCG	1 cut(s)	180
BshFI	GGCC	2 cut(s)	179, 228
BsiEI	CGRYCG	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	199
BsiHKCI	CYCGRG	2 cut(s)	192, 506
BsiSI	CCGG	1 cut(s)	380
BsmAI	GTCTC	1 cut(s)	509
BsmI	GAATGC	1 cut(s)	102
BsnI	GGCC	2 cut(s)	179, 228
BsoBI	CYCGRG	2 cut(s)	192, 506
Bsp119I	TTCGAA	1 cut(s)	94
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	2 cut(s)	219, 439
BspACI	CCGC	3 cut(s)	31, 229, 279
BspANI	GGCC	2 cut(s)	179, 228
BspCNI	CTCAG	2 cut(s)	244, 274
BspHI	TCATGA	2 cut(s)	361, 475
BspMAI	CTGCAG	1 cut(s)	316
BspOI	GCTAGC	2 cut(s)	260, 285
BspT104I	TTCGAA	1 cut(s)	94
BsrBI	CCGCTC	2 cut(s)	31, 231
BsrDI	GCAATG	1 cut(s)	52
BsrFI	RCCGGY	1 cut(s)	379
BssAI	RCCGGY	1 cut(s)	379
BssMI	GATC	2 cut(s)	219, 439
BstBI	TTCGAA	1 cut(s)	94
BstC8I	GCNNGC	2 cut(s)	258, 283
BstDEI	CTNAG	3 cut(s)	252, 261, 332
BstKTI	GATC	2 cut(s)	222, 442
BstMAI	GTCTC	1 cut(s)	509
BstMBI	GATC	2 cut(s)	219, 439
BstMCI	CGRYCG	1 cut(s)	180
BstMWI	GCNNNNNNNGC	7 cut(s)	185, 194, 314, 320, 323, 354, 517
BstSFI	CTRYAG	1 cut(s)	312
BstV1I	GCAGC	8 cut(s)	200, 221, 295, 298, 310, 313, 326, 360
BstZI	CGGCCG	1 cut(s)	177
BsuI	GTATCC	1 cut(s)	490
BsuRI	GGCC	2 cut(s)	179, 228
BtgZI	GCGATG	1 cut(s)	273
Cac8I	GCNNGC	2 cut(s)	258, 283
CciI	TCATGA	2 cut(s)	361, 475
Cfr10I	RCCGGY	1 cut(s)	379
CseI	GACGC	1 cut(s)	89
CviAII	CATG	2 cut(s)	362, 476
DdeI	CTNAG	3 cut(s)	252, 261, 332
DpnI	GATC	2 cut(s)	221, 441
DpnII	GATC	2 cut(s)	219, 439
EaeI	YGGCCR	1 cut(s)	177
EagI	CGGCCG	1 cut(s)	177
Ecl136II	GAGCTC	1 cut(s)	197
EclXI	CGGCCG	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	199
Eco52I	CGGCCG	1 cut(s)	177
Eco53kI	GAGCTC	1 cut(s)	197
Eco88I	CYCGRG	2 cut(s)	192, 506
EcoICRI	GAGCTC	1 cut(s)	197
EcoT38I	GRGCYC	1 cut(s)	199
FaeI	CATG	2 cut(s)	365, 479
FaiI	YATR	5 cut(s)	84, 157, 363, 477, 529
FalI	AAGNNNNNCTT	1 cut(s)	509
FatI	CATG	2 cut(s)	361, 475
FriOI	GRGCYC	1 cut(s)	199
FspBI	CTAG	4 cut(s)	257, 282, 342, 512
HaeIII	GGCC	2 cut(s)	179, 228
HapII	CCGG	1 cut(s)	380
HgaI	GACGC	1 cut(s)	89
Hin1II	CATG	2 cut(s)	365, 479
HinfI	GANTC	3 cut(s)	5, 365, 389
HpaII	CCGG	1 cut(s)	380
Hpy188I	TCNGA	5 cut(s)	124, 131, 164, 216, 430
Hpy188III	TCNNGA	7 cut(s)	150, 200, 263, 362, 386, 437, 476
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	2 cut(s)	53, 443
HpyCH4IV	ACGT	3 cut(s)	167, 204, 422
HpyCH4V	TGCA	3 cut(s)	209, 314, 348
HpyF10VI	GCNNNNNNNGC	7 cut(s)	185, 194, 314, 320, 323, 354, 517
HpyF3I	CTNAG	3 cut(s)	252, 261, 332
HpySE526I	ACGT	3 cut(s)	167, 204, 422
Hsp92II	CATG	2 cut(s)	365, 479
Kzo9I	GATC	2 cut(s)	219, 439
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	4 cut(s)	248, 264, 393, 450
Lsp1109I	GCAGC	8 cut(s)	200, 221, 295, 298, 310, 313, 326, 360
LweI	GCATC	1 cut(s)	335
MaeI	CTAG	4 cut(s)	257, 282, 342, 512
MaeII	ACGT	3 cut(s)	167, 204, 422
MalI	GATC	2 cut(s)	221, 441
MbiI	CCGCTC	2 cut(s)	31, 231
MboI	GATC	2 cut(s)	219, 439
MboII	GAAGA	1 cut(s)	390
MhlI	GDGCHC	1 cut(s)	199
MmeI	TCCRAC	1 cut(s)	436
MnlI	CCTC	3 cut(s)	19, 49, 80
MspI	CCGG	1 cut(s)	380
Mva1269I	GAATGC	1 cut(s)	102
MwoI	GCNNNNNNNGC	7 cut(s)	185, 194, 314, 320, 323, 354, 517
NdeII	GATC	2 cut(s)	219, 439
NheI	GCTAGC	2 cut(s)	256, 281
NlaIII	CATG	2 cut(s)	365, 479
NmeAIII	GCCGAG	1 cut(s)	212
NspV	TTCGAA	1 cut(s)	94
PaeR7I	CTCGAG	1 cut(s)	192
PagI	TCATGA	2 cut(s)	361, 475
PctI	GAATGC	1 cut(s)	102
PfeI	GAWTC	3 cut(s)	5, 365, 389
Psp124BI	GAGCTC	1 cut(s)	199
Psp1406I	AACGTT	1 cut(s)	167
PspXI	VCTCGAGB	1 cut(s)	192
PsrI	GAACNNNNNNTAC	2 cut(s)	157, 189
PstI	CTGCAG	1 cut(s)	316
SacI	GAGCTC	1 cut(s)	199
Sau3AI	GATC	2 cut(s)	219, 439
SduI	GDGCHC	1 cut(s)	199
SfaNI	GCATC	1 cut(s)	335
SfcI	CTRYAG	1 cut(s)	312
Sfr274I	CTCGAG	1 cut(s)	192
SfuI	TTCGAA	1 cut(s)	94
SlaI	CTCGAG	1 cut(s)	192
SmlI	CTYRAG	2 cut(s)	192, 384
SmoI	CTYRAG	2 cut(s)	192, 384
SsiI	CCGC	3 cut(s)	31, 229, 279
SspMI	CTAG	4 cut(s)	257, 282, 342, 512
SstI	GAGCTC	1 cut(s)	199
TaiI	ACGT	3 cut(s)	170, 207, 425
TaqI	TCGA	3 cut(s)	94, 149, 193
TauI	GCSGC	2 cut(s)	231, 281
TfiI	GAWTC	3 cut(s)	5, 365, 389
TseI	GCWGC	8 cut(s)	188, 209, 308, 311, 314, 323, 326, 348
TspDTI	ATGAA	3 cut(s)	378, 381, 390
XhoI	CTCGAG	1 cut(s)	192
XspI	CTAG	4 cut(s)	257, 282, 342, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.