Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003146

Physical Location & Seq

Genomic Coordinates Forward (+)

22349308 .. 22350458

Gene Structure 1151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G60490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGGAAAACAAATCAACATAGAGAGTAGTGCTACTCATCATCAAGACAATATTGTTTCCGTTATAACAGCCACGATATCCTCCTCCTCCGTCGTAACGTCTTCGTCAGACTCTTGGTCTACCTCCAAAAGATCGTTAGTGCAAGACAATGACTCCGGAGGGAAACGGCGGAAGAGCAACGTTAGTGATGATAACAAGAATCCGACGTCGTATAGAGGAGTGAGGATGAGGAGTTGGGGAAAATGGGTGTCGGAGATTAGAGAGCCGAGGAAGAAATCAAGAATATGGCTTGGCACTTATCCAACGGCAGAGATGGCAGCTCGTGCTCATGATGTGGCGGCTTTAGCTATTAAAGGCAACTCCGGTTTTCTTAATTTCCCTGAATTATCCGGTTTGCTTCCTCGTCCGGTTAGCTGCTCTCCTAAGGATATACAAGCTGCAGCTACCAAAGCCGCCGAAGCAACCACGTGGCACAAACCGGTTATCGATAAGAAATTAGCTGATGAGCTAAGCCACTCTGAGTTGTTGTCTACCGCTCAGTCTTCGACTTCTAGTAGTTTCGTGTTTTCTTCGGACACGTCGGAGACTTCTAGTACGGACAAGGAAAGCAACGAAGAGACGGTGTTTGATTTGCCGGACCTTTTCACGGACGGGCTTATGAACCCAAACGATGCGTTTTGTTTATGCAACGGCACCTTTACGTGGCAGCTTTACGGAGAGGAGGATGTAGGGTTCAGGTTTGAAGAGCCGTTTAATTGGCAAAATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

256

Amino Acids

28.22

Weight (kDa)

5.33

Isoelectric Point (pI)

51.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	70 - 119	5.5e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77200 AT2G25820 AT2G35700 AT3G16280 AT3G16280 AT3G60490 AT4G16750 AT4G32800
fragaria_vesca	FvH4_5g19440 FvH4_5g19460
malus_domestica	MD04G1060400.v1.1 MD06G1053600.v1.1
prunus_persica	Prupe.5G065300_v2.0.a1
pyrus_communis	pycom04g05400 pycom06g04520
rosa_chinensis	RchiOBHm_Chr7g0203971 RchiOBHm_Chr7g0204031
rosa_laevigata	RLG00000003493 RLG00000003495
rosa_multiflora	Rmu_sc0001311.1_g000005 Rmu_sc0001843.1_g000006 Rmu_sc0004074.1_g000008
rosa_roxburghii	Rroxscaffold_3G00253410 Rroxscaffold_3G00253430
rosa_rugosa	Rorug07G0074800 Rorug07G0079700 Rorug07G0080000
rosa_samantha	Rh7AG209700 Rh7AG210000 Rh7BG203400 Rh7BG208400 Rh7BG208500 Rh7CG222200 Rh7CG222500 Rh7DG216700
rosa_wichuraiana	Rw7G018260 Rw7G018280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	65
AatII	GACGTC	1 cut(s)	209
AccB1I	GGYRCC	1 cut(s)	692
AccBSI	CCGCTC	1 cut(s)	536
AccI	GTMKAC	2 cut(s)	119, 530
AccIII	TCCGGA	1 cut(s)	155
AciI	CCGC	4 cut(s)	169, 338, 453, 534
AclI	AACGTT	1 cut(s)	180
AcvI	CACGTG	1 cut(s)	468
AcyI	GRCGYC	1 cut(s)	206
AfaI	GTAC	1 cut(s)	595
AfiI	CCNNNNNNNGG	2 cut(s)	646, 702
AflIII	ACRYGT	1 cut(s)	576
AgeI	ACCGGT	1 cut(s)	478
AgsI	TTSAA	1 cut(s)	743
AhdI	GACNNNNNGTC	1 cut(s)	115
AjiI	CACGTC	1 cut(s)	579
AloI	GAACNNNNNNTCC	2 cut(s)	716, 748
AluBI	AGCT	8 cut(s)	320, 347, 414, 437, 443, 500, 508, 709
AluI	AGCT	8 cut(s)	320, 347, 414, 437, 443, 500, 508, 709
Alw21I	GWGCWC	1 cut(s)	328
Alw26I	GTCTC	2 cut(s)	578, 611
Aor13HI	TCCGGA	1 cut(s)	155
ApeKI	GCWGC	5 cut(s)	317, 414, 437, 440, 706
AsiGI	ACCGGT	1 cut(s)	478
AspS9I	GGNCC	1 cut(s)	637
AvaII	GGWCC	1 cut(s)	637
AxyI	CCTNAGG	1 cut(s)	423
BanI	GGYRCC	1 cut(s)	692
BauI	CACGAG	1 cut(s)	321
BbrPI	CACGTG	1 cut(s)	468
BbsI	GAAGAC	2 cut(s)	93, 534
Bbv12I	GWGCWC	1 cut(s)	328
BbvI	GCAGC	5 cut(s)	329, 401, 424, 452, 718
BccI	CCATC	1 cut(s)	307
BceAI	ACGGC	4 cut(s)	182, 321, 706, 733
BcoDI	GTCTC	2 cut(s)	578, 611
BfaI	CTAG	2 cut(s)	552, 591
BfmI	CTRYAG	1 cut(s)	438
BisI	GCNGC	7 cut(s)	318, 339, 415, 438, 441, 453, 707
BlpI	GCTNAGC	1 cut(s)	509
BlsI	GCNGC	7 cut(s)	319, 340, 416, 439, 442, 454, 708
Bme18I	GGWCC	1 cut(s)	637
BmeRI	GACNNNNNGTC	1 cut(s)	115
BmgBI	CACGTC	1 cut(s)	579
BmgT120I	GGNCC	1 cut(s)	637
BmiI	GGNNCC	1 cut(s)	694
BmsI	GCATC	1 cut(s)	661
BpiI	GAAGAC	2 cut(s)	93, 534
Bpu1102I	GCTNAGC	1 cut(s)	509
Bsa29I	ATCGAT	1 cut(s)	486
BsaAI	YACGTR	2 cut(s)	468, 702
BsaHI	GRCGYC	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	266
BsaWI	WCCGGW	5 cut(s)	155, 362, 389, 406, 478
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	2 cut(s)	646, 702
Bse118I	RCCGGY	1 cut(s)	478
Bse21I	CCTNAGG	1 cut(s)	423
BseAI	TCCGGA	1 cut(s)	155
BseCI	ATCGAT	1 cut(s)	486
BseDI	CCNNGG	1 cut(s)	266
BseGI	GGATG	2 cut(s)	231, 730
BseLI	CCNNNNNNNGG	2 cut(s)	646, 702
BseMII	CTCAG	2 cut(s)	510, 551
BseRI	GAGGAG	5 cut(s)	73, 76, 231, 244, 734
BseXI	GCAGC	5 cut(s)	329, 401, 424, 452, 718
BshNI	GGYRCC	1 cut(s)	692
BshTI	ACCGGT	1 cut(s)	478
BshVI	ATCGAT	1 cut(s)	486
BsiHKAI	GWGCWC	1 cut(s)	328
BsiSI	CCGG	6 cut(s)	156, 363, 390, 407, 479, 635
BslI	CCNNNNNNNGG	2 cut(s)	646, 702
BsmAI	GTCTC	2 cut(s)	578, 611
BsmBI	CGTCTC	1 cut(s)	611
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp13I	TCCGGA	1 cut(s)	155
Bsp143I	GATC	1 cut(s)	131
Bsp1720I	GCTNAGC	1 cut(s)	509
BspACI	CCGC	4 cut(s)	169, 338, 453, 534
BspCNI	CTCAG	2 cut(s)	511, 550
BspDI	ATCGAT	1 cut(s)	486
BspEI	TCCGGA	1 cut(s)	155
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	1 cut(s)	694
BspMAI	CTGCAG	1 cut(s)	442
BspQI	GCTCTTC	2 cut(s)	167, 738
BspT107I	GGYRCC	1 cut(s)	692
BsrBI	CCGCTC	1 cut(s)	536
BsrFI	RCCGGY	1 cut(s)	478
BssAI	RCCGGY	1 cut(s)	478
BssECI	CCNNGG	1 cut(s)	266
BssMI	GATC	1 cut(s)	131
BssNI	GRCGYC	1 cut(s)	206
BssSI	CACGAG	1 cut(s)	321
Bst2BI	CACGAG	1 cut(s)	321
Bst4CI	ACNGT	1 cut(s)	622
Bst6I	CTCTTC	3 cut(s)	167, 609, 738
BstACI	GRCGYC	1 cut(s)	206
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstBAI	YACGTR	2 cut(s)	468, 702
BstDEI	CTNAG	4 cut(s)	423, 509, 519, 537
BstF5I	GGATG	2 cut(s)	231, 730
BstKTI	GATC	1 cut(s)	134
BstMAI	GTCTC	2 cut(s)	578, 611
BstMBI	GATC	1 cut(s)	131
BstMWI	GCNNNNNNNGC	5 cut(s)	314, 323, 344, 449, 458
BstSFI	CTRYAG	1 cut(s)	438
BstV1I	GCAGC	5 cut(s)	329, 401, 424, 452, 718
BstV2I	GAAGAC	2 cut(s)	93, 534
Bsu15I	ATCGAT	1 cut(s)	486
Bsu36I	CCTNAGG	1 cut(s)	423
BsuTUI	ATCGAT	1 cut(s)	486
BtrI	CACGTC	1 cut(s)	579
BtsCI	GGATG	2 cut(s)	231, 730
CciI	TCATGA	1 cut(s)	328
Cfr10I	RCCGGY	1 cut(s)	478
Cfr13I	GGNCC	1 cut(s)	637
ClaI	ATCGAT	1 cut(s)	486
Csp6I	GTAC	1 cut(s)	594
CspAI	ACCGGT	1 cut(s)	478
CviAII	CATG	1 cut(s)	329
CviQI	GTAC	1 cut(s)	594
DdeI	CTNAG	4 cut(s)	423, 509, 519, 537
DpnI	GATC	1 cut(s)	133
DpnII	GATC	1 cut(s)	131
DriI	GACNNNNNGTC	1 cut(s)	115
Eam1104I	CTCTTC	3 cut(s)	167, 609, 738
Eam1105I	GACNNNNNGTC	1 cut(s)	115
EarI	CTCTTC	3 cut(s)	167, 609, 738
EciI	GGCGGA	1 cut(s)	184
Eco32I	GATATC	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	637
Eco72I	CACGTG	1 cut(s)	468
Eco81I	CCTNAGG	1 cut(s)	423
EcoRV	GATATC	1 cut(s)	78
Esp3I	CGTCTC	1 cut(s)	611
FaeI	CATG	1 cut(s)	332
FaiI	YATR	8 cut(s)	20, 65, 213, 286, 330, 431, 659, 685
FatI	CATG	1 cut(s)	328
FblI	GTMKAC	2 cut(s)	119, 530
Fnu4HI	GCNGC	7 cut(s)	318, 339, 415, 438, 441, 453, 707
FokI	GGATG	2 cut(s)	238, 737
Fsp4HI	GCNGC	7 cut(s)	318, 339, 415, 438, 441, 453, 707
FspBI	CTAG	2 cut(s)	552, 591
GluI	GCNGC	7 cut(s)	318, 339, 415, 438, 441, 453, 707
HapII	CCGG	6 cut(s)	156, 363, 390, 407, 479, 635
Hin1I	GRCGYC	1 cut(s)	206
Hin1II	CATG	1 cut(s)	332
HinfI	GANTC	3 cut(s)	110, 152, 199
HpaII	CCGG	6 cut(s)	156, 363, 390, 407, 479, 635
Hpy166II	GTNNAC	2 cut(s)	120, 531
Hpy188I	TCNGA	6 cut(s)	109, 204, 253, 520, 574, 583
Hpy188III	TCNNGA	4 cut(s)	44, 156, 279, 329
Hpy8I	GTNNAC	2 cut(s)	120, 531
Hpy99I	CGWCG	4 cut(s)	95, 208, 211, 583
HpyCH4III	ACNGT	1 cut(s)	622
HpyCH4IV	ACGT	6 cut(s)	98, 180, 206, 467, 578, 701
HpyCH4V	TGCA	3 cut(s)	142, 440, 687
HpyF10VI	GCNNNNNNNGC	5 cut(s)	314, 323, 344, 449, 458
HpyF3I	CTNAG	4 cut(s)	423, 509, 519, 537
HpySE526I	ACGT	6 cut(s)	98, 180, 206, 467, 578, 701
Hsp92I	GRCGYC	1 cut(s)	206
Hsp92II	CATG	1 cut(s)	332
Kpn2I	TCCGGA	1 cut(s)	155
Kzo9I	GATC	1 cut(s)	131
LguI	GCTCTTC	2 cut(s)	167, 738
LpnPI	CCDG	8 cut(s)	169, 376, 393, 403, 420, 492, 648, 721
Lsp1109I	GCAGC	5 cut(s)	329, 401, 424, 452, 718
LweI	GCATC	1 cut(s)	661
MaeI	CTAG	2 cut(s)	552, 591
MaeII	ACGT	6 cut(s)	98, 180, 206, 467, 578, 701
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	1 cut(s)	133
MbiI	CCGCTC	1 cut(s)	536
MboI	GATC	1 cut(s)	131
MboII	GAAGA	7 cut(s)	93, 184, 283, 534, 561, 626, 755
MhlI	GDGCHC	1 cut(s)	328
MluCI	AATT	4 cut(s)	373, 383, 494, 754
MlyI	GAGTC	2 cut(s)	104, 146
MmeI	TCCRAC	4 cut(s)	227, 231, 326, 561
MroI	TCCGGA	1 cut(s)	155
MseI	TTAA	3 cut(s)	351, 372, 753
MspI	CCGG	6 cut(s)	156, 363, 390, 407, 479, 635
MwoI	GCNNNNNNNGC	5 cut(s)	314, 323, 344, 449, 458
NdeII	GATC	1 cut(s)	131
NlaIII	CATG	1 cut(s)	332
NlaIV	GGNNCC	1 cut(s)	694
NmeAIII	GCCGAG	1 cut(s)	291
PagI	TCATGA	1 cut(s)	328
PciSI	GCTCTTC	2 cut(s)	167, 738
PfeI	GAWTC	1 cut(s)	199
PinAI	ACCGGT	1 cut(s)	478
PkrI	GCNGC	7 cut(s)	319, 340, 416, 439, 442, 454, 708
PleI	GAGTC	2 cut(s)	104, 146
PmaCI	CACGTG	1 cut(s)	468
PmlI	CACGTG	1 cut(s)	468
PpsI	GAGTC	2 cut(s)	104, 146
Ppu21I	YACGTR	2 cut(s)	468, 702
PsiI	TTATAA	1 cut(s)	65
Psp1406I	AACGTT	1 cut(s)	180
PspCI	CACGTG	1 cut(s)	468
PspN4I	GGNNCC	1 cut(s)	694
PspPI	GGNCC	1 cut(s)	637
PstI	CTGCAG	1 cut(s)	442
RsaI	GTAC	1 cut(s)	595
RsaNI	GTAC	1 cut(s)	594
SapI	GCTCTTC	2 cut(s)	167, 738
SaqAI	TTAA	3 cut(s)	351, 372, 753
SatI	GCNGC	7 cut(s)	318, 339, 415, 438, 441, 453, 707
Sau3AI	GATC	1 cut(s)	131
Sau96I	GGNCC	1 cut(s)	637
SchI	GAGTC	2 cut(s)	104, 146
SduI	GDGCHC	1 cut(s)	328
SfaNI	GCATC	1 cut(s)	661
SfcI	CTRYAG	1 cut(s)	438
SinI	GGWCC	1 cut(s)	637
Sse9I	AATT	4 cut(s)	373, 383, 494, 754
SsiI	CCGC	4 cut(s)	169, 338, 453, 534
SspI	AATATT	1 cut(s)	52
SspMI	CTAG	2 cut(s)	552, 591
TaaI	ACNGT	1 cut(s)	622
TaiI	ACGT	6 cut(s)	101, 183, 209, 470, 581, 704
TaqI	TCGA	2 cut(s)	486, 545
TasI	AATT	4 cut(s)	373, 383, 494, 754
TauI	GCSGC	2 cut(s)	341, 455
TfiI	GAWTC	1 cut(s)	199
Tru1I	TTAA	3 cut(s)	351, 372, 753
Tru9I	TTAA	3 cut(s)	351, 372, 753
TseI	GCWGC	5 cut(s)	317, 414, 437, 440, 706
TspDTI	ATGAA	1 cut(s)	674
TspGWI	ACGGA	5 cut(s)	49, 79, 611, 662, 729
VpaK11BI	GGWCC	1 cut(s)	637
XmiI	GTMKAC	2 cut(s)	119, 530
XspI	CTAG	2 cut(s)	552, 591
ZraI	GACGTC	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.