Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003146

Physical Location & Seq

Genomic Coordinates Forward (+)

6235501 .. 6238343

Gene Structure 2843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0080000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGTGGTTTTAAGCCTTCAACCTGTCCAATTTACTACCCCTAAACAACTCTCATATTGTAAAACCAGCACCACTGGTTATAGTACTAGTGTTCGATGTGGGATTGCAGAGCCATCAGGAGTTCCGGCTCCTATGGGGCAAAAGACCAAATACAATGATGGATTTTTTGAGAAAGCATTCATGACACTCTTCGCTCGCAAAATGAAGAGGTTTGCAGCTCCAGTGAAATCCAAGACTGAGATTGAGGAAAAGAAATGGTCGGAATATGACTATGAGAGTTTTGTGGACGTTTCCAAGAGAGTTATGCAGGGAAGGTCTCGCATTCAGCAGCAACAAGTGGTTAGGGAGGTCTTGTTATCTATGCTACCTCCAGGTGCGCCTGCTCAGTTTAGGAAATTATTTCCACCAACAAAGTGGGCTGCAGAGTTCAATGCTGCATTAACAGTGCCTTTCTTCCACTGGTTAGTTGGGCCTTCTGAGGTTATAGAAGTTGAGGTAGAAGGAGTGAAGCAAAGAAGTGGAGTTCGAATAAAGAAATGCAGGTACCTGGAGAACAGCGGCTGTGTTGGAATGTGTGTGAATATGTGCAAGTTTCCTACTCAAGATTTCTTCACCAATGAATTTGGGCTTCCATTAACCATGATTCCAAATTTTGAAGATATGAGTTGTGATATGGTGTACGGCCAAGTTCCACCACCGTTTGAAGAGGATCCAGTGTCCAAACAACCCTGTTTTACTGATATATGCTCCATTGCGAATCCCAGTGCCACTGTCTGTCCAAAGTTACAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

264

Amino Acids

29.71

Weight (kDa)

8.62

Isoelectric Point (pI)

51.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
D27-like_C	PF13225	154 - 236	7e-38	Beta-carotene isomerase D27-like, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77200 AT2G25820 AT2G35700 AT3G16280 AT3G16280 AT3G60490 AT4G16750 AT4G32800
fragaria_vesca	FvH4_5g19440 FvH4_5g19460
malus_domestica	MD04G1060400.v1.1 MD06G1053600.v1.1
prunus_persica	Prupe.5G065300_v2.0.a1
pyrus_communis	pycom04g05400 pycom06g04520
rosa_chinensis	RchiOBHm_Chr7g0203971 RchiOBHm_Chr7g0204031
rosa_laevigata	RLG00000003493 RLG00000003495
rosa_multiflora	Rmu_sc0001311.1_g000005 Rmu_sc0001843.1_g000006 Rmu_sc0004074.1_g000008
rosa_roxburghii	Rroxscaffold_3G00253410 Rroxscaffold_3G00253430
rosa_rugosa	Rorug07G0074800 Rorug07G0079700 Rorug07G0080000
rosa_samantha	Rh7AG209700 Rh7AG210000 Rh7BG203400 Rh7BG208400 Rh7BG208500 Rh7CG222200 Rh7CG222500 Rh7DG216700
rosa_wichuraiana	Rw7G018260 Rw7G018280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	531
Acc65I	GGTACC	1 cut(s)	543
AccB1I	GGYRCC	1 cut(s)	543
AciI	CCGC	1 cut(s)	558
AclWI	GGATC	2 cut(s)	704, 717
AcoI	YGGCCR	1 cut(s)	682
AcsI	RAATTY	2 cut(s)	620, 649
AfaI	GTAC	3 cut(s)	85, 545, 680
AgsI	TTSAA	4 cut(s)	20, 430, 656, 704
AhlI	ACTAGT	1 cut(s)	86
AjnI	CCWGG	2 cut(s)	370, 546
AluBI	AGCT	2 cut(s)	218, 791
AluI	AGCT	2 cut(s)	218, 791
Alw26I	GTCTC	1 cut(s)	321
AlwI	GGATC	2 cut(s)	704, 717
AlwNI	CAGNNNCTG	1 cut(s)	561
AoxI	GGCC	2 cut(s)	470, 682
ApeKI	GCWGC	4 cut(s)	215, 328, 419, 434
ApoI	RAATTY	2 cut(s)	620, 649
Asp700I	GAANNNNTTC	1 cut(s)	176
Asp718I	GGTACC	1 cut(s)	543
AspLEI	GCGC	1 cut(s)	379
AspS9I	GGNCC	1 cut(s)	470
AsuHPI	GGTGA	1 cut(s)	604
AsuII	TTCGAA	1 cut(s)	526
BamHI	GGATCC	1 cut(s)	709
BanI	GGYRCC	1 cut(s)	543
BbvI	GCAGC	4 cut(s)	227, 340, 406, 421
BccI	CCATC	2 cut(s)	121, 152
BceAI	ACGGC	1 cut(s)	697
BciT130I	CCWGG	2 cut(s)	372, 548
BcoDI	GTCTC	1 cut(s)	321
BcuI	ACTAGT	1 cut(s)	86
BfaI	CTAG	1 cut(s)	87
BfmI	CTRYAG	1 cut(s)	420
BfuAI	ACCTGC	1 cut(s)	531
BisI	GCNGC	5 cut(s)	216, 329, 420, 435, 559
BlsI	GCNGC	5 cut(s)	217, 330, 421, 436, 560
BmcAI	AGTACT	1 cut(s)	85
Bme1390I	CCNGG	2 cut(s)	372, 548
BmgT120I	GGNCC	1 cut(s)	470
BmiI	GGNNCC	3 cut(s)	129, 545, 711
BmrFI	CCNGG	2 cut(s)	372, 548
BmrI	ACTGGG	1 cut(s)	756
BmuI	ACTGGG	1 cut(s)	756
BpmI	CTGGAG	3 cut(s)	204, 354, 569
Bpu14I	TTCGAA	1 cut(s)	526
BpuEI	CTTGAG	1 cut(s)	585
BsaI	GGTCTC	1 cut(s)	321
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bse1I	ACTGG	5 cut(s)	79, 221, 464, 713, 762
Bse3DI	GCAATG	1 cut(s)	750
BseBI	CCWGG	2 cut(s)	372, 548
BseMI	GCAATG	1 cut(s)	750
BseMII	CTCAG	3 cut(s)	228, 398, 468
BseNI	ACTGG	5 cut(s)	79, 221, 464, 713, 762
BseXI	GCAGC	4 cut(s)	227, 340, 406, 421
BshFI	GGCC	2 cut(s)	472, 684
BshNI	GGYRCC	1 cut(s)	543
BsiSI	CCGG	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	321
BsmI	GAATGC	2 cut(s)	176, 321
BsnI	GGCC	2 cut(s)	472, 684
Bso31I	GGTCTC	1 cut(s)	321
Bsp119I	TTCGAA	1 cut(s)	526
Bsp143I	GATC	1 cut(s)	709
BspACI	CCGC	1 cut(s)	558
BspANI	GGCC	2 cut(s)	472, 684
BspCNI	CTCAG	3 cut(s)	229, 397, 469
BspHI	TCATGA	1 cut(s)	180
BspLI	GGNNCC	3 cut(s)	129, 545, 711
BspMAI	CTGCAG	1 cut(s)	424
BspMI	ACCTGC	1 cut(s)	531
BspPI	GGATC	2 cut(s)	704, 717
BspT104I	TTCGAA	1 cut(s)	526
BspT107I	GGYRCC	1 cut(s)	543
BspTNI	GGTCTC	1 cut(s)	321
BsrDI	GCAATG	1 cut(s)	750
BsrI	ACTGG	5 cut(s)	79, 221, 464, 713, 762
BssMI	GATC	1 cut(s)	709
Bst2UI	CCWGG	2 cut(s)	372, 548
Bst4CI	ACNGT	3 cut(s)	445, 699, 772
Bst6I	CTCTTC	3 cut(s)	194, 200, 699
BstBI	TTCGAA	1 cut(s)	526
BstC8I	GCNNGC	2 cut(s)	196, 381
BstDEI	CTNAG	3 cut(s)	237, 384, 477
BstHHI	GCGC	1 cut(s)	379
BstKTI	GATC	1 cut(s)	712
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	709
BstNI	CCWGG	2 cut(s)	372, 548
BstSCI	CCNGG	2 cut(s)	370, 546
BstSFI	CTRYAG	1 cut(s)	420
BstV1I	GCAGC	4 cut(s)	227, 340, 406, 421
BstX2I	RGATCY	1 cut(s)	709
BstXI	CCANNNNNNTGG	1 cut(s)	414
BstYI	RGATCY	1 cut(s)	709
BsuRI	GGCC	2 cut(s)	472, 684
BtsIMutI	CAGTG	7 cut(s)	72, 228, 450, 457, 720, 768, 769
BveI	ACCTGC	1 cut(s)	531
Cac8I	GCNNGC	2 cut(s)	196, 381
CaiI	CAGNNNCTG	1 cut(s)	561
CciI	TCATGA	1 cut(s)	180
CfoI	GCGC	1 cut(s)	379
Cfr13I	GGNCC	1 cut(s)	470
Csp6I	GTAC	3 cut(s)	84, 544, 679
CviAII	CATG	2 cut(s)	181, 640
CviQI	GTAC	3 cut(s)	84, 544, 679
DdeI	CTNAG	3 cut(s)	237, 384, 477
DpnI	GATC	1 cut(s)	711
DpnII	GATC	1 cut(s)	709
EaeI	YGGCCR	1 cut(s)	682
Eam1104I	CTCTTC	3 cut(s)	194, 200, 699
EarI	CTCTTC	3 cut(s)	194, 200, 699
Eco31I	GGTCTC	1 cut(s)	321
EcoRII	CCWGG	2 cut(s)	370, 546
FaeI	CATG	2 cut(s)	184, 643
FatI	CATG	2 cut(s)	180, 639
Fnu4HI	GCNGC	5 cut(s)	216, 329, 420, 435, 559
Fsp4HI	GCNGC	5 cut(s)	216, 329, 420, 435, 559
FspBI	CTAG	1 cut(s)	87
GlaI	GCGC	1 cut(s)	378
GluI	GCNGC	5 cut(s)	216, 329, 420, 435, 559
GsuI	CTGGAG	3 cut(s)	204, 354, 569
HaeIII	GGCC	2 cut(s)	472, 684
HapII	CCGG	1 cut(s)	125
HhaI	GCGC	1 cut(s)	379
Hin1II	CATG	2 cut(s)	184, 643
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HindIII	AAGCTT	1 cut(s)	789
HinfI	GANTC	2 cut(s)	643, 757
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	1 cut(s)	604
Hpy166II	GTNNAC	2 cut(s)	286, 679
Hpy188I	TCNGA	2 cut(s)	262, 478
Hpy188III	TCNNGA	3 cut(s)	117, 181, 602
Hpy8I	GTNNAC	2 cut(s)	286, 679
HpyAV	CCTTC	4 cut(s)	26, 306, 483, 494
HpyCH4III	ACNGT	3 cut(s)	445, 699, 772
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	7 cut(s)	107, 215, 307, 422, 437, 540, 588
HpyF3I	CTNAG	3 cut(s)	237, 384, 477
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	2 cut(s)	184, 643
HspAI	GCGC	1 cut(s)	377
KpnI	GGTACC	1 cut(s)	547
Kzo9I	GATC	1 cut(s)	709
LmnI	GCTCC	3 cut(s)	133, 223, 752
Lsp1109I	GCAGC	4 cut(s)	227, 340, 406, 421
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	1 cut(s)	783
MalI	GATC	1 cut(s)	711
MboI	GATC	1 cut(s)	709
MboII	GAAGA	6 cut(s)	181, 217, 445, 601, 668, 716
MflI	RGATCY	1 cut(s)	709
MluCI	AATT	4 cut(s)	29, 395, 620, 649
MmeI	TCCRAC	2 cut(s)	240, 547
MnlI	CCTC	7 cut(s)	201, 238, 340, 378, 472, 487, 700
MroXI	GAANNNNTTC	1 cut(s)	176
MseI	TTAA	3 cut(s)	11, 440, 635
MspA1I	CMGCKG	1 cut(s)	558
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	2 cut(s)	372, 548
Mva1269I	GAATGC	2 cut(s)	176, 321
MvaI	CCWGG	2 cut(s)	372, 548
NdeII	GATC	1 cut(s)	709
NlaIII	CATG	2 cut(s)	184, 643
NlaIV	GGNNCC	3 cut(s)	129, 545, 711
NspV	TTCGAA	1 cut(s)	526
PagI	TCATGA	1 cut(s)	180
PctI	GAATGC	2 cut(s)	176, 321
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	643, 757
PkrI	GCNGC	5 cut(s)	217, 330, 421, 436, 560
Psp6I	CCWGG	2 cut(s)	370, 546
PspGI	CCWGG	2 cut(s)	370, 546
PspN4I	GGNNCC	3 cut(s)	129, 545, 711
PspPI	GGNCC	1 cut(s)	470
PstI	CTGCAG	1 cut(s)	424
PstNI	CAGNNNCTG	1 cut(s)	561
PsuI	RGATCY	1 cut(s)	709
RsaI	GTAC	3 cut(s)	85, 545, 680
RsaNI	GTAC	3 cut(s)	84, 544, 679
SaqAI	TTAA	3 cut(s)	11, 440, 635
SatI	GCNGC	5 cut(s)	216, 329, 420, 435, 559
Sau3AI	GATC	1 cut(s)	709
Sau96I	GGNCC	1 cut(s)	470
ScaI	AGTACT	1 cut(s)	85
ScrFI	CCNGG	2 cut(s)	372, 548
SfcI	CTRYAG	1 cut(s)	420
SfuI	TTCGAA	1 cut(s)	526
SmlI	CTYRAG	1 cut(s)	600
SmoI	CTYRAG	1 cut(s)	600
SpeI	ACTAGT	1 cut(s)	86
Sse9I	AATT	4 cut(s)	29, 395, 620, 649
SsiI	CCGC	1 cut(s)	558
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	2 cut(s)	370, 546
TaaI	ACNGT	3 cut(s)	445, 699, 772
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	2 cut(s)	94, 526
TasI	AATT	4 cut(s)	29, 395, 620, 649
TatI	WGTACW	1 cut(s)	83
TauI	GCSGC	1 cut(s)	561
TfiI	GAWTC	2 cut(s)	643, 757
Tru1I	TTAA	3 cut(s)	11, 440, 635
Tru9I	TTAA	3 cut(s)	11, 440, 635
TscAI	CASTG	7 cut(s)	79, 228, 450, 464, 720, 769, 775
TseI	GCWGC	4 cut(s)	215, 328, 419, 434
TspDTI	ATGAA	3 cut(s)	169, 218, 633
TspRI	CASTG	7 cut(s)	79, 228, 450, 464, 720, 769, 775
XapI	RAATTY	2 cut(s)	620, 649
XcmI	CCANNNNNNNNNTGG	2 cut(s)	411, 464
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	1 cut(s)	87
ZrmI	AGTACT	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.