Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003146

Physical Location & Seq

Genomic Coordinates Reverse (-)

17597165 .. 17598053

Gene Structure 889 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG208500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGAATCAGCAAGAACTCAAAAAGGGGAGCGGAAAAGGGTGAGCAATGGGAGTGAAGAAGGCAGTAAGCAGAAACCAATGTATAGAGGAGTTCGAATGCGTCATTGGGGAAAATGGGTATCAGAAATCAGAGAGCCAAGAAAGAAGTCGAGAATATGGCTCGGAACGTTTGCTACAGCCGAAATGGCAGCTCGAGCTCACGACGTTGCAGCTCTGACGATCAAAGGCCGCTCGGCTTATCTCAACTTCCCTGAGCTAGCTCAGGAACTTCCTTGTGCCGCTAGCTCATTGCCGAAAGACATTCAAGCTGCTGCAGCTAAAGCTGCTGCTCTTAGCTATCCTAGCTGCAGCAGCAGCAGCAGTCATGAAGCTCATGAATCCAAAACCGAACCGGCTCAAGATTCATCGTCTTCATCAAAAAATGAAGATGACTCGTTTTTTGACCTTCCTGATCTGCTGTTAGACGTTGGAAATTATCGTAGTAATCATGAGTATTTTTCGCTTGTGGATGCAAGTCTCAGGCTAGAAGAGCCTTTCTTATGGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

182

Amino Acids

20.28

Weight (kDa)

6.53

Isoelectric Point (pI)

51.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	27 - 76	2.7e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77200 AT2G25820 AT2G35700 AT3G16280 AT3G16280 AT3G60490 AT4G16750 AT4G32800
fragaria_vesca	FvH4_5g19440 FvH4_5g19460
malus_domestica	MD04G1060400.v1.1 MD06G1053600.v1.1
prunus_persica	Prupe.5G065300_v2.0.a1
pyrus_communis	pycom04g05400 pycom06g04520
rosa_chinensis	RchiOBHm_Chr7g0203971 RchiOBHm_Chr7g0204031
rosa_laevigata	RLG00000003493 RLG00000003495
rosa_multiflora	Rmu_sc0001311.1_g000005 Rmu_sc0001843.1_g000006 Rmu_sc0004074.1_g000008
rosa_roxburghii	Rroxscaffold_3G00253410 Rroxscaffold_3G00253430
rosa_rugosa	Rorug07G0074800 Rorug07G0079700 Rorug07G0080000
rosa_samantha	Rh7AG209700 Rh7AG210000 Rh7BG203400 Rh7BG208400 Rh7BG208500 Rh7CG222200 Rh7CG222500 Rh7DG216700
rosa_wichuraiana	Rw7G018260 Rw7G018280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	31, 231
AciI	CCGC	3 cut(s)	31, 229, 279
AclI	AACGTT	1 cut(s)	167
AgsI	TTSAA	1 cut(s)	305
AjuI	GAANNNNNNNTTGG	2 cut(s)	88, 120
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	1 cut(s)	521
Ama87I	CYCGRG	1 cut(s)	192
AoxI	GGCC	1 cut(s)	226
ArsI	GACNNNNNNTTYG	2 cut(s)	422, 454
AsuHPI	GGTGA	1 cut(s)	52
AsuII	TTCGAA	1 cut(s)	94
AsuNHI	GCTAGC	2 cut(s)	256, 281
AvaI	CYCGRG	1 cut(s)	192
BanII	GRGCYC	1 cut(s)	199
BbsI	GAAGAC	1 cut(s)	402
Bbv12I	GWGCWC	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	521
BfaI	CTAG	4 cut(s)	257, 282, 342, 524
BfmI	CTRYAG	3 cut(s)	174, 312, 346
BglI	GCCNNNNNGGC	1 cut(s)	185
BmeT110I	CYCGRG	1 cut(s)	192
BmsI	GCATC	1 cut(s)	499
BmtI	GCTAGC	2 cut(s)	260, 285
BpiI	GAAGAC	1 cut(s)	402
Bpu10I	CCTNAGC	2 cut(s)	252, 261
Bpu14I	TTCGAA	1 cut(s)	94
BpuEI	CTTGAG	1 cut(s)	381
Bse118I	RCCGGY	1 cut(s)	391
Bse3DI	GCAATG	2 cut(s)	52, 287
BseGI	GGATG	1 cut(s)	514
BseMI	GCAATG	2 cut(s)	52, 287
BseMII	CTCAG	3 cut(s)	243, 275, 532
BseRI	GAGGAG	1 cut(s)	102
BshFI	GGCC	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	199
BsiHKCI	CYCGRG	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	392
BsmAI	GTCTC	1 cut(s)	521
BsmI	GAATGC	1 cut(s)	102
BsnI	GGCC	1 cut(s)	228
BsoBI	CYCGRG	1 cut(s)	192
Bsp119I	TTCGAA	1 cut(s)	94
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	2 cut(s)	219, 451
BspACI	CCGC	3 cut(s)	31, 229, 279
BspANI	GGCC	1 cut(s)	228
BspCNI	CTCAG	3 cut(s)	244, 274, 531
BspHI	TCATGA	3 cut(s)	364, 373, 487
BspMAI	CTGCAG	2 cut(s)	316, 350
BspOI	GCTAGC	2 cut(s)	260, 285
BspQI	GCTCTTC	1 cut(s)	522
BspT104I	TTCGAA	1 cut(s)	94
BsrBI	CCGCTC	2 cut(s)	31, 231
BsrDI	GCAATG	2 cut(s)	52, 287
BsrFI	RCCGGY	1 cut(s)	391
BssAI	RCCGGY	1 cut(s)	391
BssMI	GATC	2 cut(s)	219, 451
Bst6I	CTCTTC	1 cut(s)	522
BstBI	TTCGAA	1 cut(s)	94
BstC8I	GCNNGC	2 cut(s)	258, 283
BstDEI	CTNAG	4 cut(s)	252, 261, 332, 518
BstF5I	GGATG	1 cut(s)	514
BstKTI	GATC	2 cut(s)	222, 454
BstMAI	GTCTC	1 cut(s)	521
BstMBI	GATC	2 cut(s)	219, 451
BstSFI	CTRYAG	3 cut(s)	174, 312, 346
BstV2I	GAAGAC	1 cut(s)	402
BsuRI	GGCC	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	514
Cac8I	GCNNGC	2 cut(s)	258, 283
CciI	TCATGA	3 cut(s)	364, 373, 487
Cfr10I	RCCGGY	1 cut(s)	391
CseI	GACGC	1 cut(s)	89
CviAII	CATG	3 cut(s)	365, 374, 488
DdeI	CTNAG	4 cut(s)	252, 261, 332, 518
DpnI	GATC	2 cut(s)	221, 453
DpnII	GATC	2 cut(s)	219, 451
Eam1104I	CTCTTC	1 cut(s)	522
EarI	CTCTTC	1 cut(s)	522
Ecl136II	GAGCTC	1 cut(s)	197
Eco24I	GRGCYC	1 cut(s)	199
Eco53kI	GAGCTC	1 cut(s)	197
Eco88I	CYCGRG	1 cut(s)	192
EcoICRI	GAGCTC	1 cut(s)	197
EcoT38I	GRGCYC	1 cut(s)	199
FaeI	CATG	3 cut(s)	368, 377, 491
FaiI	YATR	6 cut(s)	84, 157, 366, 375, 489, 541
FatI	CATG	3 cut(s)	364, 373, 487
FokI	GGATG	1 cut(s)	521
FriOI	GRGCYC	1 cut(s)	199
FspBI	CTAG	4 cut(s)	257, 282, 342, 524
HaeIII	GGCC	1 cut(s)	228
HapII	CCGG	1 cut(s)	392
HgaI	GACGC	1 cut(s)	89
Hin1II	CATG	3 cut(s)	368, 377, 491
HinfI	GANTC	4 cut(s)	5, 377, 401, 431
HpaII	CCGG	1 cut(s)	392
HphI	GGTGA	1 cut(s)	52
Hpy188I	TCNGA	4 cut(s)	124, 131, 164, 216
Hpy188III	TCNNGA	8 cut(s)	150, 200, 263, 365, 374, 398, 449, 488
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	2 cut(s)	53, 455
HpyCH4IV	ACGT	3 cut(s)	167, 204, 465
HpyCH4V	TGCA	4 cut(s)	209, 314, 348, 512
HpyF3I	CTNAG	4 cut(s)	252, 261, 332, 518
HpySE526I	ACGT	3 cut(s)	167, 204, 465
Hsp92II	CATG	3 cut(s)	368, 377, 491
Kzo9I	GATC	2 cut(s)	219, 451
LguI	GCTCTTC	1 cut(s)	522
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	5 cut(s)	248, 264, 405, 462, 505
LweI	GCATC	1 cut(s)	499
MaeI	CTAG	4 cut(s)	257, 282, 342, 524
MaeII	ACGT	3 cut(s)	167, 204, 465
MalI	GATC	2 cut(s)	221, 453
MbiI	CCGCTC	2 cut(s)	31, 231
MboI	GATC	2 cut(s)	219, 451
MboII	GAAGA	4 cut(s)	68, 402, 437, 539
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	1 cut(s)	472
MlyI	GAGTC	1 cut(s)	425
MmeI	TCCRAC	1 cut(s)	448
MnlI	CCTC	1 cut(s)	80
MspI	CCGG	1 cut(s)	392
Mva1269I	GAATGC	1 cut(s)	102
NdeII	GATC	2 cut(s)	219, 451
NheI	GCTAGC	2 cut(s)	256, 281
NlaIII	CATG	3 cut(s)	368, 377, 491
NmeAIII	GCCGAG	1 cut(s)	212
NspV	TTCGAA	1 cut(s)	94
PaeR7I	CTCGAG	1 cut(s)	192
PagI	TCATGA	3 cut(s)	364, 373, 487
PciSI	GCTCTTC	1 cut(s)	522
PctI	GAATGC	1 cut(s)	102
PfeI	GAWTC	3 cut(s)	5, 377, 401
PleI	GAGTC	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	425
Psp124BI	GAGCTC	1 cut(s)	199
Psp1406I	AACGTT	1 cut(s)	167
PspXI	VCTCGAGB	1 cut(s)	192
PsrI	GAACNNNNNNTAC	2 cut(s)	157, 189
PstI	CTGCAG	2 cut(s)	316, 350
SacI	GAGCTC	1 cut(s)	199
SapI	GCTCTTC	1 cut(s)	522
Sau3AI	GATC	2 cut(s)	219, 451
SchI	GAGTC	1 cut(s)	425
SduI	GDGCHC	1 cut(s)	199
SfaNI	GCATC	1 cut(s)	499
SfcI	CTRYAG	3 cut(s)	174, 312, 346
Sfr274I	CTCGAG	1 cut(s)	192
SfuI	TTCGAA	1 cut(s)	94
SlaI	CTCGAG	1 cut(s)	192
SmlI	CTYRAG	2 cut(s)	192, 396
SmoI	CTYRAG	2 cut(s)	192, 396
Sse9I	AATT	1 cut(s)	472
SsiI	CCGC	3 cut(s)	31, 229, 279
SspMI	CTAG	4 cut(s)	257, 282, 342, 524
SstI	GAGCTC	1 cut(s)	199
TaiI	ACGT	3 cut(s)	170, 207, 468
TaqI	TCGA	3 cut(s)	94, 149, 193
TasI	AATT	1 cut(s)	472
TauI	GCSGC	2 cut(s)	231, 281
TfiI	GAWTC	3 cut(s)	5, 377, 401
TspDTI	ATGAA	5 cut(s)	381, 390, 393, 402, 438
XhoI	CTCGAG	1 cut(s)	192
XspI	CTAG	4 cut(s)	257, 282, 342, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.