Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003146

Physical Location & Seq

Genomic Coordinates Reverse (-)

11268785 .. 11269904

Gene Structure 1120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g19440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGAAGAAGAGCAATCAACCACCTCCTCCTCTTCTTCTGGTTCAACTACCTCTGCAGAATGTGAAGCAGGGAAGAAGTGTAAGGGAGCGAAGAAGAAGCGAGTGATCGAAAACGGGAGCGGGAAAGGAGCAAAGAGTGATGGGAGTGAAGAAGGTAGTCAGCAGCATCCAATGTATAGAGGAGTTCGAAGGCGTCAATGGGGAAAATGGGTATCAGAAATCAGGGAGCCGAGAAAGAAGTCGAGAATATGGCTGGGAACATTTGAGACACCGGAAATGGCAGCTCGAGCTCACGACGTGGCGGCTCTGACGATCAAAGGCAGCTCAGCCTACTTAAACTTCCCTGAGCTAGCACAGGAGCTTCCTCGCCCAGCTAGCTCATCGCCGAAGGACATTCAAGCTGCGGCAGCTAAAGCAGCTGCTCTTAGCTACCCTAACTGCAGGAATAGCCATGAAACTCATGAACCGGAAGAAGCACGGCCGTGTCGAGATTCATCATCAACTTCACCACTATCAGATGAACATAACGATGACACATTCTATGACCTTCCTGATCTGCTAATAGATGTTGGACAGTATCACGGTGATCATGAGTACTACTTTCCGGTGGCGGCGACGTGGCAGCTGGATCCGATGGATACCATTCTCAGAATGGAAGAGTCTTTCTTATGGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

226

Amino Acids

25.03

Weight (kDa)

5.45

Isoelectric Point (pI)

60.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	58 - 107	2.5e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77200 AT2G25820 AT2G35700 AT3G16280 AT3G16280 AT3G60490 AT4G16750 AT4G32800
fragaria_vesca	FvH4_5g19440 FvH4_5g19460
malus_domestica	MD04G1060400.v1.1 MD06G1053600.v1.1
prunus_persica	Prupe.5G065300_v2.0.a1
pyrus_communis	pycom04g05400 pycom06g04520
rosa_chinensis	RchiOBHm_Chr7g0203971 RchiOBHm_Chr7g0204031
rosa_laevigata	RLG00000003493 RLG00000003495
rosa_multiflora	Rmu_sc0001311.1_g000005 Rmu_sc0001843.1_g000006 Rmu_sc0004074.1_g000008
rosa_roxburghii	Rroxscaffold_3G00253410 Rroxscaffold_3G00253430
rosa_rugosa	Rorug07G0074800 Rorug07G0079700 Rorug07G0080000
rosa_samantha	Rh7AG209700 Rh7AG210000 Rh7BG203400 Rh7BG208400 Rh7BG208500 Rh7CG222200 Rh7CG222500 Rh7DG216700
rosa_wichuraiana	Rw7G018260 Rw7G018280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	120
AciI	CCGC	4 cut(s)	120, 302, 404, 611
AclWI	GGATC	2 cut(s)	623, 636
AcoI	YGGCCR	1 cut(s)	479
AcyI	GRCGYC	1 cut(s)	193
AdeI	CACNNNGTG	1 cut(s)	298
AfaI	GTAC	1 cut(s)	596
AgsI	TTSAA	2 cut(s)	45, 398
AjiI	CACGTC	2 cut(s)	298, 618
AleI	CACNNNNGTG	1 cut(s)	481
Alw21I	GWGCWC	1 cut(s)	292
Alw26I	GTCTC	1 cut(s)	260
AlwI	GGATC	2 cut(s)	623, 636
Ama87I	CYCGRG	1 cut(s)	285
AoxI	GGCC	1 cut(s)	479
ApeKI	GCWGC	8 cut(s)	163, 281, 321, 401, 407, 416, 419, 622
AsuHPI	GGTGA	2 cut(s)	498, 596
AsuII	TTCGAA	1 cut(s)	187
AsuNHI	GCTAGC	2 cut(s)	349, 374
AvaI	CYCGRG	1 cut(s)	285
BamHI	GGATCC	1 cut(s)	628
BanII	GRGCYC	1 cut(s)	292
Bbv12I	GWGCWC	1 cut(s)	292
BbvI	GCAGC	8 cut(s)	175, 293, 333, 388, 406, 419, 428, 634
BccI	CCATC	2 cut(s)	134, 628
BceAI	ACGGC	2 cut(s)	466, 494
BciVI	GTATCC	1 cut(s)	631
BclI	TGATCA	1 cut(s)	586
BcoDI	GTCTC	1 cut(s)	260
BfaI	CTAG	2 cut(s)	350, 375
BfmI	CTRYAG	2 cut(s)	54, 439
BfuI	GTATCC	1 cut(s)	631
BlpI	GCTNAGC	1 cut(s)	325
BmcAI	AGTACT	1 cut(s)	596
BmeT110I	CYCGRG	1 cut(s)	285
BmgBI	CACGTC	2 cut(s)	298, 618
BmiI	GGNNCC	2 cut(s)	228, 630
BmsI	GCATC	1 cut(s)	175
BmtI	GCTAGC	2 cut(s)	353, 378
Bpu10I	CCTNAGC	1 cut(s)	345
Bpu1102I	GCTNAGC	1 cut(s)	325
Bpu14I	TTCGAA	1 cut(s)	187
BsaHI	GRCGYC	1 cut(s)	193
BsaWI	WCCGGW	3 cut(s)	271, 466, 604
BseGI	GGATG	1 cut(s)	166
BseMII	CTCAG	3 cut(s)	336, 339, 661
BseRI	GAGGAG	3 cut(s)	16, 19, 195
BseX3I	CGGCCG	1 cut(s)	479
BseXI	GCAGC	8 cut(s)	175, 293, 333, 388, 406, 419, 428, 634
BseYI	CCCAGC	2 cut(s)	253, 370
Bsh1285I	CGRYCG	1 cut(s)	482
BshFI	GGCC	1 cut(s)	481
BsiEI	CGRYCG	1 cut(s)	482
BsiHKAI	GWGCWC	1 cut(s)	292
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	3 cut(s)	272, 467, 605
BsmAI	GTCTC	1 cut(s)	260
BsnI	GGCC	1 cut(s)	481
BsoBI	CYCGRG	1 cut(s)	285
Bsp119I	TTCGAA	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	5 cut(s)	105, 312, 553, 586, 628
Bsp1720I	GCTNAGC	1 cut(s)	325
BspACI	CCGC	4 cut(s)	120, 302, 404, 611
BspANI	GGCC	1 cut(s)	481
BspCNI	CTCAG	3 cut(s)	337, 338, 660
BspHI	TCATGA	2 cut(s)	460, 589
BspLI	GGNNCC	2 cut(s)	228, 630
BspMAI	CTGCAG	2 cut(s)	58, 443
BspOI	GCTAGC	2 cut(s)	353, 378
BspPI	GGATC	2 cut(s)	623, 636
BspQI	GCTCTTC	1 cut(s)	3
BspT104I	TTCGAA	1 cut(s)	187
BsrBI	CCGCTC	1 cut(s)	120
BssMI	GATC	5 cut(s)	105, 312, 553, 586, 628
BssNI	GRCGYC	1 cut(s)	193
Bst4CI	ACNGT	2 cut(s)	576, 584
Bst6I	CTCTTC	3 cut(s)	3, 37, 651
BstACI	GRCGYC	1 cut(s)	193
BstBI	TTCGAA	1 cut(s)	187
BstC8I	GCNNGC	2 cut(s)	351, 376
BstDEI	CTNAG	4 cut(s)	325, 345, 425, 647
BstF5I	GGATG	1 cut(s)	166
BstKTI	GATC	5 cut(s)	108, 315, 556, 589, 631
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	5 cut(s)	105, 312, 553, 586, 628
BstMCI	CGRYCG	1 cut(s)	482
BstMWI	GCNNNNNNNGC	6 cut(s)	287, 375, 407, 413, 416, 447
BstSFI	CTRYAG	2 cut(s)	54, 439
BstV1I	GCAGC	8 cut(s)	175, 293, 333, 388, 406, 419, 428, 634
BstX2I	RGATCY	1 cut(s)	628
BstYI	RGATCY	1 cut(s)	628
BstZI	CGGCCG	1 cut(s)	479
BsuI	GTATCC	1 cut(s)	631
BsuRI	GGCC	1 cut(s)	481
BtgZI	GCGATG	1 cut(s)	366
BtrI	CACGTC	2 cut(s)	298, 618
BtsCI	GGATG	1 cut(s)	166
Cac8I	GCNNGC	2 cut(s)	351, 376
CciI	TCATGA	2 cut(s)	460, 589
CseI	GACGC	1 cut(s)	182
Csp6I	GTAC	1 cut(s)	595
CviAII	CATG	3 cut(s)	452, 461, 590
CviQI	GTAC	1 cut(s)	595
DdeI	CTNAG	4 cut(s)	325, 345, 425, 647
DpnI	GATC	5 cut(s)	107, 314, 555, 588, 630
DpnII	GATC	5 cut(s)	105, 312, 553, 586, 628
DraIII	CACNNNGTG	1 cut(s)	298
EaeI	YGGCCR	1 cut(s)	479
EagI	CGGCCG	1 cut(s)	479
Eam1104I	CTCTTC	3 cut(s)	3, 37, 651
EarI	CTCTTC	3 cut(s)	3, 37, 651
Ecl136II	GAGCTC	1 cut(s)	290
EclXI	CGGCCG	1 cut(s)	479
Eco24I	GRGCYC	1 cut(s)	292
Eco52I	CGGCCG	1 cut(s)	479
Eco53kI	GAGCTC	1 cut(s)	290
Eco88I	CYCGRG	1 cut(s)	285
EcoICRI	GAGCTC	1 cut(s)	290
EcoT38I	GRGCYC	1 cut(s)	292
FaeI	CATG	3 cut(s)	455, 464, 593
FaiI	YATR	8 cut(s)	177, 250, 453, 462, 525, 543, 591, 670
FatI	CATG	3 cut(s)	451, 460, 589
FauI	CCCGC	1 cut(s)	113
FbaI	TGATCA	1 cut(s)	586
FokI	GGATG	1 cut(s)	153
FriOI	GRGCYC	1 cut(s)	292
FspBI	CTAG	2 cut(s)	350, 375
GsaI	CCCAGC	2 cut(s)	257, 374
HaeIII	GGCC	1 cut(s)	481
HapII	CCGG	3 cut(s)	272, 467, 605
HgaI	GACGC	1 cut(s)	182
Hin1I	GRCGYC	1 cut(s)	193
Hin1II	CATG	3 cut(s)	455, 464, 593
HinfI	GANTC	2 cut(s)	491, 659
HpaII	CCGG	3 cut(s)	272, 467, 605
HphI	GGTGA	2 cut(s)	498, 596
Hpy188I	TCNGA	5 cut(s)	217, 309, 517, 633, 650
Hpy188III	TCNNGA	6 cut(s)	243, 293, 461, 488, 551, 590
Hpy99I	CGWCG	2 cut(s)	299, 619
HpyAV	CCTTC	4 cut(s)	146, 183, 382, 557
HpyCH4III	ACNGT	2 cut(s)	576, 584
HpyCH4IV	ACGT	2 cut(s)	297, 617
HpyCH4V	TGCA	2 cut(s)	56, 441
HpyF10VI	GCNNNNNNNGC	6 cut(s)	287, 375, 407, 413, 416, 447
HpyF3I	CTNAG	4 cut(s)	325, 345, 425, 647
HpySE526I	ACGT	2 cut(s)	297, 617
Hsp92I	GRCGYC	1 cut(s)	193
Hsp92II	CATG	3 cut(s)	455, 464, 593
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	5 cut(s)	105, 312, 553, 586, 628
LguI	GCTCTTC	1 cut(s)	3
LmnI	GCTCC	5 cut(s)	86, 117, 128, 226, 358
Lsp1109I	GCAGC	8 cut(s)	175, 293, 333, 388, 406, 419, 428, 634
LweI	GCATC	1 cut(s)	175
MaeI	CTAG	2 cut(s)	350, 375
MaeII	ACGT	2 cut(s)	297, 617
MalI	GATC	5 cut(s)	107, 314, 555, 588, 630
MbiI	CCGCTC	1 cut(s)	120
MboI	GATC	5 cut(s)	105, 312, 553, 586, 628
MflI	RGATCY	1 cut(s)	628
MhlI	GDGCHC	1 cut(s)	292
MlyI	GAGTC	1 cut(s)	668
MmeI	TCCRAC	1 cut(s)	550
MnlI	CCTC	6 cut(s)	34, 37, 40, 61, 173, 375
MseI	TTAA	1 cut(s)	335
MslI	CAYNNNNRTG	2 cut(s)	481, 528
MspA1I	CMGCKG	2 cut(s)	419, 625
MspI	CCGG	3 cut(s)	272, 467, 605
MwoI	GCNNNNNNNGC	6 cut(s)	287, 375, 407, 413, 416, 447
NdeII	GATC	5 cut(s)	105, 312, 553, 586, 628
NheI	GCTAGC	2 cut(s)	349, 374
NlaIII	CATG	3 cut(s)	455, 464, 593
NlaIV	GGNNCC	2 cut(s)	228, 630
NmeAIII	GCCGAG	1 cut(s)	255
NspV	TTCGAA	1 cut(s)	187
OliI	CACNNNNGTG	1 cut(s)	481
PaeR7I	CTCGAG	1 cut(s)	285
PagI	TCATGA	2 cut(s)	460, 589
PciSI	GCTCTTC	1 cut(s)	3
PcsI	WCGNNNNNNNCGW	1 cut(s)	484
PfeI	GAWTC	1 cut(s)	491
PleI	GAGTC	1 cut(s)	667
PpsI	GAGTC	1 cut(s)	667
Psp124BI	GAGCTC	1 cut(s)	292
PspFI	CCCAGC	2 cut(s)	253, 370
PspN4I	GGNNCC	2 cut(s)	228, 630
PspXI	VCTCGAGB	1 cut(s)	285
PstI	CTGCAG	2 cut(s)	58, 443
PsuI	RGATCY	1 cut(s)	628
PvuII	CAGCTG	2 cut(s)	419, 625
RsaI	GTAC	1 cut(s)	596
RsaNI	GTAC	1 cut(s)	595
RseI	CAYNNNNRTG	2 cut(s)	481, 528
SacI	GAGCTC	1 cut(s)	292
SapI	GCTCTTC	1 cut(s)	3
SaqAI	TTAA	1 cut(s)	335
Sau3AI	GATC	5 cut(s)	105, 312, 553, 586, 628
ScaI	AGTACT	1 cut(s)	596
SchI	GAGTC	1 cut(s)	668
SduI	GDGCHC	1 cut(s)	292
SfaNI	GCATC	1 cut(s)	175
SfcI	CTRYAG	2 cut(s)	54, 439
Sfr274I	CTCGAG	1 cut(s)	285
SfuI	TTCGAA	1 cut(s)	187
SlaI	CTCGAG	1 cut(s)	285
SmiMI	CAYNNNNRTG	2 cut(s)	481, 528
SmlI	CTYRAG	1 cut(s)	285
SmoI	CTYRAG	1 cut(s)	285
SsiI	CCGC	4 cut(s)	120, 302, 404, 611
SspMI	CTAG	2 cut(s)	350, 375
SstI	GAGCTC	1 cut(s)	292
TaaI	ACNGT	2 cut(s)	576, 584
TaiI	ACGT	2 cut(s)	300, 620
TaqI	TCGA	5 cut(s)	108, 187, 242, 286, 487
TatI	WGTACW	1 cut(s)	594
TauI	GCSGC	3 cut(s)	305, 407, 614
TfiI	GAWTC	1 cut(s)	491
Tru1I	TTAA	1 cut(s)	335
Tru9I	TTAA	1 cut(s)	335
TseI	GCWGC	8 cut(s)	163, 281, 321, 401, 407, 416, 419, 622
TspDTI	ATGAA	4 cut(s)	468, 477, 483, 534
XcmI	CCANNNNNNNNNTGG	1 cut(s)	649
XhoI	CTCGAG	1 cut(s)	285
XspI	CTAG	2 cut(s)	350, 375
ZrmI	AGTACT	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.