Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003146

Physical Location & Seq

Genomic Coordinates Reverse (-)

20900614 .. 20901741

Gene Structure 1128 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG216700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAAGAAGAGCAATCAACAACCGCCACCTCTTCTTCTGGTTCAACCACCTCTGCACAATGTGAAGCAGGAAAGATTAGCAAGAGAGTGAAGAAGCAGCAAGTAGTCGAAAACGGGAGCGAGAAAAGAGCAAAGAGTGATGGGAGTGAAGAAGGTAGTAAGCAGCATCCAATGTATAGAGGAGTTCGAATGCGTCAATGGGGGAAATGGGTATCAGAAATCAGAGAGCCGAGAAAGAAGTCGAGAATATGGCTCGGAACATTTGAGACACCCGAAATGGCGGCTCGAGCTCACGACGTGGCGGCTCTGACGATCAAAGGCCGCTCGGCCTACTTAAACTTTCCCGAGCTAGCTAAGGAGCTTCCCCGTCCAGATAGCTCATCGCCGAAGGACATTCAAGCTGCTGCAGCCAAAGCTGCTGCTATTAGCTACCCTAACTGCAGCAGTAGCCATGAAGCGGAAGAAGCCCAGCCGGCTCAAGATTCATCAACTTCACCAATATCAGATGATCATAACGATGATACATTTTATGACCTTCCTGATCTGCTGTTAGATGTTGGACAGTATCACGGTGATCATGAGTACTACTTTCCGGTGGTGACCTGGCAGCTCGGAGGAGCCGATCCGATTGATACAAGTCTTAGAATGGAAGAGTCTTTCTTATGGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

223

Amino Acids

24.76

Weight (kDa)

5.14

Isoelectric Point (pI)

53.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	58 - 107	2e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77200 AT2G25820 AT2G35700 AT3G16280 AT3G16280 AT3G60490 AT4G16750 AT4G32800
fragaria_vesca	FvH4_5g19440 FvH4_5g19460
malus_domestica	MD04G1060400.v1.1 MD06G1053600.v1.1
prunus_persica	Prupe.5G065300_v2.0.a1
pyrus_communis	pycom04g05400 pycom06g04520
rosa_chinensis	RchiOBHm_Chr7g0203971 RchiOBHm_Chr7g0204031
rosa_laevigata	RLG00000003493 RLG00000003495
rosa_multiflora	Rmu_sc0001311.1_g000005 Rmu_sc0001843.1_g000006 Rmu_sc0004074.1_g000008
rosa_roxburghii	Rroxscaffold_3G00253410 Rroxscaffold_3G00253430
rosa_rugosa	Rorug07G0074800 Rorug07G0079700 Rorug07G0080000
rosa_samantha	Rh7AG209700 Rh7AG210000 Rh7BG203400 Rh7BG208400 Rh7BG208500 Rh7CG222200 Rh7CG222500 Rh7DG216700
rosa_wichuraiana	Rw7G018260 Rw7G018280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	324
AciI	CCGC	5 cut(s)	24, 281, 302, 322, 458
AclWI	GGATC	1 cut(s)	617
AdeI	CACNNNGTG	2 cut(s)	62, 298
AfaI	GTAC	1 cut(s)	584
AfiI	CCNNNNNNNGG	1 cut(s)	457
AgsI	TTSAA	2 cut(s)	45, 398
AjiI	CACGTC	1 cut(s)	298
AjnI	CCWGG	1 cut(s)	602
AluBI	AGCT	9 cut(s)	290, 349, 353, 361, 378, 401, 416, 429, 610
AluI	AGCT	9 cut(s)	290, 349, 353, 361, 378, 401, 416, 429, 610
Alw21I	GWGCWC	1 cut(s)	292
Alw26I	GTCTC	1 cut(s)	260
AlwI	GGATC	1 cut(s)	617
Ama87I	CYCGRG	2 cut(s)	285, 344
AoxI	GGCC	2 cut(s)	319, 327
ApeKI	GCWGC	9 cut(s)	97, 163, 401, 404, 407, 416, 419, 441, 607
AsuHPI	GGTGA	3 cut(s)	486, 584, 610
AsuII	TTCGAA	1 cut(s)	187
AsuNHI	GCTAGC	1 cut(s)	349
AvaI	CYCGRG	2 cut(s)	285, 344
BanII	GRGCYC	1 cut(s)	292
Bbv12I	GWGCWC	1 cut(s)	292
BbvI	GCAGC	9 cut(s)	109, 175, 388, 391, 403, 406, 419, 453, 619
BccI	CCATC	1 cut(s)	134
BciT130I	CCWGG	1 cut(s)	604
BclI	TGATCA	2 cut(s)	508, 574
BcoDI	GTCTC	1 cut(s)	260
BfaI	CTAG	1 cut(s)	350
BfmI	CTRYAG	2 cut(s)	405, 439
BglI	GCCNNNNNGGC	1 cut(s)	473
BmcAI	AGTACT	1 cut(s)	584
Bme1390I	CCNGG	1 cut(s)	604
BmeT110I	CYCGRG	2 cut(s)	285, 344
BmgBI	CACGTC	1 cut(s)	298
BmiI	GGNNCC	1 cut(s)	619
BmrFI	CCNGG	1 cut(s)	604
BmsI	GCATC	1 cut(s)	175
BmtI	GCTAGC	1 cut(s)	353
Bpu10I	CCTNAGC	1 cut(s)	354
Bpu14I	TTCGAA	1 cut(s)	187
BpuEI	CTTGAG	1 cut(s)	462
BsaWI	WCCGGW	1 cut(s)	592
Bsc4I	CCNNNNNNNGG	1 cut(s)	457
Bse118I	RCCGGY	1 cut(s)	472
BseBI	CCWGG	1 cut(s)	604
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	457
BseRI	GAGGAG	2 cut(s)	195, 630
BseXI	GCAGC	9 cut(s)	109, 175, 388, 391, 403, 406, 419, 453, 619
BseYI	CCCAGC	1 cut(s)	468
BsgI	GTGCAG	1 cut(s)	39
BshFI	GGCC	2 cut(s)	321, 329
BsiHKAI	GWGCWC	1 cut(s)	292
BsiHKCI	CYCGRG	2 cut(s)	285, 344
BsiSI	CCGG	2 cut(s)	473, 593
BslI	CCNNNNNNNGG	1 cut(s)	457
BsmAI	GTCTC	1 cut(s)	260
BsmI	GAATGC	1 cut(s)	195
BsnI	GGCC	2 cut(s)	321, 329
BsoBI	CYCGRG	2 cut(s)	285, 344
Bsp119I	TTCGAA	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	5 cut(s)	312, 508, 541, 574, 622
BspACI	CCGC	5 cut(s)	24, 281, 302, 322, 458
BspANI	GGCC	2 cut(s)	321, 329
BspHI	TCATGA	1 cut(s)	577
BspLI	GGNNCC	1 cut(s)	619
BspMAI	CTGCAG	2 cut(s)	409, 443
BspOI	GCTAGC	1 cut(s)	353
BspPI	GGATC	1 cut(s)	617
BspQI	GCTCTTC	1 cut(s)	3
BspT104I	TTCGAA	1 cut(s)	187
BsrBI	CCGCTC	1 cut(s)	324
BsrFI	RCCGGY	1 cut(s)	472
BssAI	RCCGGY	1 cut(s)	472
BssMI	GATC	5 cut(s)	312, 508, 541, 574, 622
Bst2UI	CCWGG	1 cut(s)	604
Bst4CI	ACNGT	2 cut(s)	564, 572
Bst6I	CTCTTC	3 cut(s)	3, 37, 645
BstBI	TTCGAA	1 cut(s)	187
BstC8I	GCNNGC	2 cut(s)	351, 474
BstDEI	CTNAG	2 cut(s)	354, 641
BstEII	GGTNACC	1 cut(s)	598
BstF5I	GGATG	1 cut(s)	166
BstKTI	GATC	5 cut(s)	315, 511, 544, 577, 625
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	5 cut(s)	312, 508, 541, 574, 622
BstMWI	GCNNNNNNNGC	7 cut(s)	287, 407, 413, 416, 447, 464, 473
BstNI	CCWGG	1 cut(s)	604
BstPI	GGTNACC	1 cut(s)	598
BstSCI	CCNGG	1 cut(s)	602
BstSFI	CTRYAG	2 cut(s)	405, 439
BstV1I	GCAGC	9 cut(s)	109, 175, 388, 391, 403, 406, 419, 453, 619
BsuRI	GGCC	2 cut(s)	321, 329
BtgZI	GCGATG	1 cut(s)	366
BtrI	CACGTC	1 cut(s)	298
BtsCI	GGATG	1 cut(s)	166
Cac8I	GCNNGC	2 cut(s)	351, 474
CciI	TCATGA	1 cut(s)	577
Cfr10I	RCCGGY	1 cut(s)	472
CseI	GACGC	1 cut(s)	182
Csp6I	GTAC	1 cut(s)	583
CviAII	CATG	2 cut(s)	452, 578
CviQI	GTAC	1 cut(s)	583
DdeI	CTNAG	2 cut(s)	354, 641
DpnI	GATC	5 cut(s)	314, 510, 543, 576, 624
DpnII	GATC	5 cut(s)	312, 508, 541, 574, 622
DraIII	CACNNNGTG	2 cut(s)	62, 298
Eam1104I	CTCTTC	3 cut(s)	3, 37, 645
EarI	CTCTTC	3 cut(s)	3, 37, 645
Ecl136II	GAGCTC	1 cut(s)	290
Eco24I	GRGCYC	1 cut(s)	292
Eco53kI	GAGCTC	1 cut(s)	290
Eco88I	CYCGRG	2 cut(s)	285, 344
Eco91I	GGTNACC	1 cut(s)	598
EcoICRI	GAGCTC	1 cut(s)	290
EcoO65I	GGTNACC	1 cut(s)	598
EcoRII	CCWGG	1 cut(s)	602
EcoT38I	GRGCYC	1 cut(s)	292
FaeI	CATG	2 cut(s)	455, 581
FaiI	YATR	7 cut(s)	177, 250, 453, 513, 531, 579, 664
FatI	CATG	2 cut(s)	451, 577
FbaI	TGATCA	2 cut(s)	508, 574
FokI	GGATG	1 cut(s)	153
FriOI	GRGCYC	1 cut(s)	292
FspBI	CTAG	1 cut(s)	350
GsaI	CCCAGC	1 cut(s)	472
HaeIII	GGCC	2 cut(s)	321, 329
HapII	CCGG	2 cut(s)	473, 593
HgaI	GACGC	1 cut(s)	182
Hin1II	CATG	2 cut(s)	455, 581
HinfI	GANTC	2 cut(s)	482, 653
HpaII	CCGG	2 cut(s)	473, 593
HphI	GGTGA	3 cut(s)	486, 584, 610
Hpy188I	TCNGA	7 cut(s)	217, 224, 257, 309, 505, 614, 627
Hpy188III	TCNNGA	7 cut(s)	243, 293, 344, 371, 479, 539, 578
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	3 cut(s)	146, 382, 545
HpyCH4III	ACNGT	2 cut(s)	564, 572
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	3 cut(s)	56, 407, 441
HpyF10VI	GCNNNNNNNGC	7 cut(s)	287, 407, 413, 416, 447, 464, 473
HpyF3I	CTNAG	2 cut(s)	354, 641
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	2 cut(s)	455, 581
KroI	GCCGGC	1 cut(s)	472
KroNI	GCCGGC	1 cut(s)	474
Ksp22I	TGATCA	2 cut(s)	508, 574
Kzo9I	GATC	5 cut(s)	312, 508, 541, 574, 622
LguI	GCTCTTC	1 cut(s)	3
LmnI	GCTCC	3 cut(s)	117, 358, 617
LpnPI	CCDG	9 cut(s)	24, 54, 384, 482, 486, 552, 589, 606, 616
Lsp1109I	GCAGC	9 cut(s)	109, 175, 388, 391, 403, 406, 419, 453, 619
LweI	GCATC	1 cut(s)	175
MaeI	CTAG	1 cut(s)	350
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	598
MalI	GATC	5 cut(s)	314, 510, 543, 576, 624
MbiI	CCGCTC	1 cut(s)	324
MboI	GATC	5 cut(s)	312, 508, 541, 574, 622
MboII	GAAGA	8 cut(s)	17, 20, 24, 27, 103, 161, 473, 662
MhlI	GDGCHC	1 cut(s)	292
MlyI	GAGTC	1 cut(s)	662
MmeI	TCCRAC	1 cut(s)	538
MnlI	CCTC	4 cut(s)	40, 61, 173, 608
MroNI	GCCGGC	1 cut(s)	472
MseI	TTAA	1 cut(s)	335
MslI	CAYNNNNRTG	1 cut(s)	516
MspI	CCGG	2 cut(s)	473, 593
MspR9I	CCNGG	1 cut(s)	604
Mva1269I	GAATGC	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	604
MwoI	GCNNNNNNNGC	7 cut(s)	287, 407, 413, 416, 447, 464, 473
NaeI	GCCGGC	1 cut(s)	474
NdeII	GATC	5 cut(s)	312, 508, 541, 574, 622
NgoMIV	GCCGGC	1 cut(s)	472
NheI	GCTAGC	1 cut(s)	349
NlaIII	CATG	2 cut(s)	455, 581
NlaIV	GGNNCC	1 cut(s)	619
NmeAIII	GCCGAG	2 cut(s)	255, 305
NmuCI	GTSAC	1 cut(s)	598
NspV	TTCGAA	1 cut(s)	187
PaeR7I	CTCGAG	1 cut(s)	285
PagI	TCATGA	1 cut(s)	577
PciSI	GCTCTTC	1 cut(s)	3
PcsI	WCGNNNNNNNCGW	1 cut(s)	618
PctI	GAATGC	1 cut(s)	195
PdiI	GCCGGC	1 cut(s)	474
PfeI	GAWTC	1 cut(s)	482
PleI	GAGTC	1 cut(s)	661
PpsI	GAGTC	1 cut(s)	661
Psp124BI	GAGCTC	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	602
PspEI	GGTNACC	1 cut(s)	598
PspFI	CCCAGC	1 cut(s)	468
PspGI	CCWGG	1 cut(s)	602
PspN4I	GGNNCC	1 cut(s)	619
PspXI	VCTCGAGB	1 cut(s)	285
PstI	CTGCAG	2 cut(s)	409, 443
RsaI	GTAC	1 cut(s)	584
RsaNI	GTAC	1 cut(s)	583
RseI	CAYNNNNRTG	1 cut(s)	516
SacI	GAGCTC	1 cut(s)	292
SapI	GCTCTTC	1 cut(s)	3
SaqAI	TTAA	1 cut(s)	335
Sau3AI	GATC	5 cut(s)	312, 508, 541, 574, 622
ScaI	AGTACT	1 cut(s)	584
SchI	GAGTC	1 cut(s)	662
ScrFI	CCNGG	1 cut(s)	604
SduI	GDGCHC	1 cut(s)	292
SfaNI	GCATC	1 cut(s)	175
SfcI	CTRYAG	2 cut(s)	405, 439
Sfr274I	CTCGAG	1 cut(s)	285
SfuI	TTCGAA	1 cut(s)	187
SlaI	CTCGAG	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	516
SmlI	CTYRAG	2 cut(s)	285, 477
SmoI	CTYRAG	2 cut(s)	285, 477
SsiI	CCGC	5 cut(s)	24, 281, 302, 322, 458
SspMI	CTAG	1 cut(s)	350
SstI	GAGCTC	1 cut(s)	292
StyD4I	CCNGG	1 cut(s)	602
TaaI	ACNGT	2 cut(s)	564, 572
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	4 cut(s)	108, 187, 242, 286
TatI	WGTACW	1 cut(s)	582
TauI	GCSGC	3 cut(s)	284, 305, 324
TfiI	GAWTC	1 cut(s)	482
Tru1I	TTAA	1 cut(s)	335
Tru9I	TTAA	1 cut(s)	335
TseFI	GTSAC	1 cut(s)	598
TseI	GCWGC	9 cut(s)	97, 163, 401, 404, 407, 416, 419, 441, 607
Tsp45I	GTSAC	1 cut(s)	598
TspDTI	ATGAA	2 cut(s)	468, 474
XhoI	CTCGAG	1 cut(s)	285
XspI	CTAG	1 cut(s)	350
ZrmI	AGTACT	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.