Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003146

Physical Location & Seq

Genomic Coordinates Forward (+)

7935050 .. 7936520

Gene Structure 1471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G065300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGAAGAAGAACAATTCAACTCTATAGATTCTGAGGCTCAAACCACATCTTCTTCCTACTCAAATTCAACCACATCTTCTTCTGCAGAATCTGAAGCCCAAAAAGTCAGCAAGAGATCAAATCAACAAGTACTTGATCATGATCAAAAGGGTACGAACGATGATGATGATGACGATGATGATGATGATCAAATCAGTCAAAAGAAAGCAAAGATCAATGGTAGTAATGGGACTCAGCATCATCATCCAGTGTACAGAGGAGTGAGAATGCGTCAATGGGGGAAATGGGTGTCAGAAATCCGAGAGCCAAGAAAGAAGTCAAGAATTTGGCTTGGAACTTTTCCCACCCCTGAAATGGCCGCTCGAGCGCACGATGTGGCTGCCCTAACAATCAAAGGCCGCTCTGCTGTCCTCAACTTTCCTGAGCTGGCTCAGGAGCTTCCCCGCCCAGCTTCTGCGTCGGCAAAGGACATCCAGGCTGCTGCTGCCAAAGCAGCTGCTCTTAACTACCCAATAAGCTGTAGCAGCAGCAGCAGCAGCAGCCGTGAAGCCGAAGCGGAAACCGAAGCAGAGCTGAGCCAGCACAGGCAAGCTGTCCATGATACACAAGACTCATCAACTTCACCATCAACCAATAACGACGACATGTTTTTCGACCTTCCTGATCTGCTGTTAGATTTTGGGCACCACAGGGATCATGGGTTTTGCTTCTCTGTGCCATGGCTTGAAGAGCCTAATAATTTCCTGTGGATGGAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

254

Amino Acids

28.18

Weight (kDa)

4.91

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77200 AT2G25820 AT2G35700 AT3G16280 AT3G16280 AT3G60490 AT4G16750 AT4G32800
fragaria_vesca	FvH4_5g19440 FvH4_5g19460
malus_domestica	MD04G1060400.v1.1 MD06G1053600.v1.1
prunus_persica	Prupe.5G065300_v2.0.a1
pyrus_communis	pycom04g05400 pycom06g04520
rosa_chinensis	RchiOBHm_Chr7g0203971 RchiOBHm_Chr7g0204031
rosa_laevigata	RLG00000003493 RLG00000003495
rosa_multiflora	Rmu_sc0001311.1_g000005 Rmu_sc0001843.1_g000006 Rmu_sc0004074.1_g000008
rosa_roxburghii	Rroxscaffold_3G00253410 Rroxscaffold_3G00253430
rosa_rugosa	Rorug07G0074800 Rorug07G0079700 Rorug07G0080000
rosa_samantha	Rh7AG209700 Rh7AG210000 Rh7BG203400 Rh7BG208400 Rh7BG208500 Rh7CG222200 Rh7CG222500 Rh7DG216700
rosa_wichuraiana	Rw7G018260 Rw7G018280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	684
AccBSI	CCGCTC	2 cut(s)	362, 402
AciI	CCGC	4 cut(s)	360, 400, 445, 557
AclWI	GGATC	1 cut(s)	702
AcoI	YGGCCR	1 cut(s)	357
AcsI	RAATTY	2 cut(s)	64, 324
AcuI	CTGAAG	1 cut(s)	114
AdeI	CACNNNGTG	1 cut(s)	376
AfaI	GTAC	3 cut(s)	132, 154, 254
AfiI	CCNNNNNNNGG	2 cut(s)	355, 751
AflIII	ACRYGT	1 cut(s)	645
AgsI	TTSAA	3 cut(s)	19, 69, 728
AjnI	CCWGG	1 cut(s)	474
AluBI	AGCT	7 cut(s)	427, 439, 452, 497, 519, 574, 593
AluI	AGCT	7 cut(s)	427, 439, 452, 497, 519, 574, 593
AlwI	GGATC	1 cut(s)	702
AlwNI	CAGNNNCTG	2 cut(s)	92, 455
Ama87I	CYCGRG	1 cut(s)	363
AoxI	GGCC	2 cut(s)	357, 397
ApoI	RAATTY	2 cut(s)	64, 324
ArsI	GACNNNNNNTTYG	2 cut(s)	635, 667
AspLEI	GCGC	1 cut(s)	370
AsuHPI	GGTGA	1 cut(s)	615
AvaI	CYCGRG	1 cut(s)	363
BaeGI	GKGCMC	1 cut(s)	687
BanI	GGYRCC	1 cut(s)	684
BccI	CCATC	2 cut(s)	634, 745
BceAI	ACGGC	1 cut(s)	528
BcgI	CGANNNNNNTGC	2 cut(s)	362, 396
BciT130I	CCWGG	1 cut(s)	476
BclI	TGATCA	3 cut(s)	136, 142, 187
BfmI	CTRYAG	3 cut(s)	24, 84, 520
BlpI	GCTNAGC	1 cut(s)	575
BmcAI	AGTACT	1 cut(s)	132
Bme1390I	CCNGG	1 cut(s)	476
BmeT110I	CYCGRG	1 cut(s)	363
BmiI	GGNNCC	1 cut(s)	686
BmrFI	CCNGG	1 cut(s)	476
BmsI	GCATC	1 cut(s)	247
Bpu10I	CCTNAGC	2 cut(s)	423, 432
Bpu1102I	GCTNAGC	1 cut(s)	575
BsaBI	GATNNNNATC	2 cut(s)	141, 186
BsaJI	CCNNGG	1 cut(s)	719
Bsc4I	CCNNNNNNNGG	2 cut(s)	355, 751
Bse1I	ACTGG	1 cut(s)	248
Bse8I	GATNNNNATC	2 cut(s)	141, 186
BseBI	CCWGG	1 cut(s)	476
BseDI	CCNNGG	1 cut(s)	719
BseGI	GGATG	3 cut(s)	244, 471, 756
BseJI	GATNNNNATC	2 cut(s)	141, 186
BseLI	CCNNNNNNNGG	2 cut(s)	355, 751
BseMII	CTCAG	5 cut(s)	24, 248, 414, 446, 566
BseNI	ACTGG	1 cut(s)	248
BseRI	GAGGAG	1 cut(s)	273
BseSI	GKGCMC	1 cut(s)	687
BseYI	CCCAGC	1 cut(s)	448
BshFI	GGCC	2 cut(s)	359, 399
BshNI	GGYRCC	1 cut(s)	684
BsiHKCI	CYCGRG	1 cut(s)	363
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	2 cut(s)	355, 751
BsmFI	GGGAC	1 cut(s)	244
BsmI	GAATGC	1 cut(s)	273
BsnI	GGCC	2 cut(s)	359, 399
BsoBI	CYCGRG	1 cut(s)	363
Bsp1286I	GDGCHC	1 cut(s)	687
Bsp1407I	TGTACA	1 cut(s)	252
Bsp143I	GATC	7 cut(s)	116, 136, 142, 187, 213, 664, 694
Bsp1720I	GCTNAGC	1 cut(s)	575
Bsp19I	CCATGG	1 cut(s)	719
BspACI	CCGC	4 cut(s)	360, 400, 445, 557
BspANI	GGCC	2 cut(s)	359, 399
BspCNI	CTCAG	5 cut(s)	25, 247, 415, 445, 567
BspHI	TCATGA	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	686
BspMAI	CTGCAG	1 cut(s)	88
BspPI	GGATC	1 cut(s)	702
BspQI	GCTCTTC	1 cut(s)	723
BspT107I	GGYRCC	1 cut(s)	684
BsrBI	CCGCTC	2 cut(s)	362, 402
BsrGI	TGTACA	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	248
BssECI	CCNNGG	1 cut(s)	719
BssMI	GATC	7 cut(s)	116, 136, 142, 187, 213, 664, 694
BssT1I	CCWWGG	1 cut(s)	719
Bst2UI	CCWGG	1 cut(s)	476
Bst6I	CTCTTC	1 cut(s)	723
BstAUI	TGTACA	1 cut(s)	252
BstC8I	GCNNGC	3 cut(s)	429, 581, 591
BstDEI	CTNAG	5 cut(s)	33, 234, 423, 432, 575
BstDSI	CCRYGG	1 cut(s)	719
BstF5I	GGATG	3 cut(s)	244, 471, 756
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	7 cut(s)	119, 139, 145, 190, 216, 667, 697
BstMBI	GATC	7 cut(s)	116, 136, 142, 187, 213, 664, 694
BstNI	CCWGG	1 cut(s)	476
BstNSI	RCATGY	1 cut(s)	649
BstSCI	CCNGG	1 cut(s)	474
BstSFI	CTRYAG	3 cut(s)	24, 84, 520
BstSLI	GKGCMC	1 cut(s)	687
BsuRI	GGCC	2 cut(s)	359, 399
BtgI	CCRYGG	1 cut(s)	719
BtsCI	GGATG	3 cut(s)	244, 471, 756
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	3 cut(s)	429, 581, 591
CaiI	CAGNNNCTG	2 cut(s)	92, 455
CciI	TCATGA	1 cut(s)	139
CfoI	GCGC	1 cut(s)	370
CseI	GACGC	2 cut(s)	260, 447
Csp6I	GTAC	3 cut(s)	131, 153, 253
CviAII	CATG	5 cut(s)	140, 599, 646, 698, 720
CviQI	GTAC	3 cut(s)	131, 153, 253
DdeI	CTNAG	5 cut(s)	33, 234, 423, 432, 575
DpnI	GATC	7 cut(s)	118, 138, 144, 189, 215, 666, 696
DpnII	GATC	7 cut(s)	116, 136, 142, 187, 213, 664, 694
DraIII	CACNNNGTG	1 cut(s)	376
EaeI	YGGCCR	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	723
EarI	CTCTTC	1 cut(s)	723
Eco130I	CCWWGG	1 cut(s)	719
Eco57I	CTGAAG	1 cut(s)	114
Eco88I	CYCGRG	1 cut(s)	363
EcoRII	CCWGG	1 cut(s)	474
EcoT14I	CCWWGG	1 cut(s)	719
ErhI	CCWWGG	1 cut(s)	719
FaeI	CATG	5 cut(s)	143, 602, 649, 701, 723
FaiI	YATR	6 cut(s)	26, 141, 600, 647, 699, 721
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	5 cut(s)	139, 598, 645, 697, 719
FauI	CCCGC	1 cut(s)	452
FbaI	TGATCA	3 cut(s)	136, 142, 187
FokI	GGATG	2 cut(s)	231, 458
GlaI	GCGC	1 cut(s)	369
GsaI	CCCAGC	1 cut(s)	452
HaeIII	GGCC	2 cut(s)	359, 399
HgaI	GACGC	2 cut(s)	260, 447
HhaI	GCGC	1 cut(s)	370
Hin1II	CATG	5 cut(s)	143, 602, 649, 701, 723
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HinfI	GANTC	4 cut(s)	29, 89, 232, 611
HphI	GGTGA	1 cut(s)	615
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	4 cut(s)	34, 94, 295, 302
Hpy188III	TCNNGA	5 cut(s)	140, 321, 422, 434, 662
Hpy8I	GTNNAC	1 cut(s)	253
Hpy99I	CGWCG	2 cut(s)	463, 644
HpyAV	CCTTC	1 cut(s)	668
HpyCH4V	TGCA	1 cut(s)	86
HpyF3I	CTNAG	5 cut(s)	33, 234, 423, 432, 575
Hsp92II	CATG	5 cut(s)	143, 602, 649, 701, 723
HspAI	GCGC	1 cut(s)	368
Ksp22I	TGATCA	3 cut(s)	136, 142, 187
Kzo9I	GATC	7 cut(s)	116, 136, 142, 187, 213, 664, 694
LguI	GCTCTTC	1 cut(s)	723
LmnI	GCTCC	1 cut(s)	436
LweI	GCATC	1 cut(s)	247
MalI	GATC	7 cut(s)	118, 138, 144, 189, 215, 666, 696
MbiI	CCGCTC	2 cut(s)	362, 402
MboI	GATC	7 cut(s)	116, 136, 142, 187, 213, 664, 694
MboII	GAAGA	7 cut(s)	17, 20, 42, 45, 69, 72, 740
MhlI	GDGCHC	1 cut(s)	687
MluCI	AATT	5 cut(s)	14, 64, 324, 739, 757
MlyI	GAGTC	2 cut(s)	226, 605
MnlI	CCTC	3 cut(s)	28, 251, 422
MseI	TTAA	1 cut(s)	504
MspA1I	CMGCKG	1 cut(s)	497
MspR9I	CCNGG	1 cut(s)	476
Mva1269I	GAATGC	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	476
NcoI	CCATGG	1 cut(s)	719
NdeII	GATC	7 cut(s)	116, 136, 142, 187, 213, 664, 694
NlaIII	CATG	5 cut(s)	143, 602, 649, 701, 723
NlaIV	GGNNCC	1 cut(s)	686
NspI	RCATGY	1 cut(s)	649
PaeR7I	CTCGAG	1 cut(s)	363
PagI	TCATGA	1 cut(s)	139
PciI	ACATGT	1 cut(s)	645
PciSI	GCTCTTC	1 cut(s)	723
PctI	GAATGC	1 cut(s)	273
PfeI	GAWTC	2 cut(s)	29, 89
PleI	GAGTC	2 cut(s)	226, 605
PpsI	GAGTC	2 cut(s)	226, 605
PscI	ACATGT	1 cut(s)	645
Psp6I	CCWGG	1 cut(s)	474
PspFI	CCCAGC	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	474
PspN4I	GGNNCC	1 cut(s)	686
PspXI	VCTCGAGB	1 cut(s)	363
PstI	CTGCAG	1 cut(s)	88
PstNI	CAGNNNCTG	2 cut(s)	92, 455
PvuII	CAGCTG	1 cut(s)	497
RsaI	GTAC	3 cut(s)	132, 154, 254
RsaNI	GTAC	3 cut(s)	131, 153, 253
SapI	GCTCTTC	1 cut(s)	723
SaqAI	TTAA	1 cut(s)	504
Sau3AI	GATC	7 cut(s)	116, 136, 142, 187, 213, 664, 694
ScaI	AGTACT	1 cut(s)	132
SchI	GAGTC	2 cut(s)	226, 605
ScrFI	CCNGG	1 cut(s)	476
SduI	GDGCHC	1 cut(s)	687
SetI	ASST	8 cut(s)	429, 441, 454, 499, 521, 576, 595, 660
SfaNI	GCATC	1 cut(s)	247
SfcI	CTRYAG	3 cut(s)	24, 84, 520
Sfr274I	CTCGAG	1 cut(s)	363
SlaI	CTCGAG	1 cut(s)	363
SmlI	CTYRAG	1 cut(s)	363
SmoI	CTYRAG	1 cut(s)	363
Sse9I	AATT	5 cut(s)	14, 64, 324, 739, 757
SsiI	CCGC	4 cut(s)	360, 400, 445, 557
StyD4I	CCNGG	1 cut(s)	474
StyI	CCWWGG	1 cut(s)	719
TaqI	TCGA	2 cut(s)	364, 654
TasI	AATT	5 cut(s)	14, 64, 324, 739, 757
TatI	WGTACW	2 cut(s)	130, 252
TauI	GCSGC	2 cut(s)	362, 402
TfiI	GAWTC	2 cut(s)	29, 89
Tru1I	TTAA	1 cut(s)	504
Tru9I	TTAA	1 cut(s)	504
TscAI	CASTG	1 cut(s)	255
TspRI	CASTG	1 cut(s)	255
XapI	RAATTY	2 cut(s)	64, 324
XceI	RCATGY	1 cut(s)	649
XcmI	CCANNNNNNNNNTGG	2 cut(s)	352, 695
XhoI	CTCGAG	1 cut(s)	363
ZrmI	AGTACT	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.