Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003146

Physical Location & Seq

Genomic Coordinates Forward (+)

49174663 .. 49175122

Gene Structure 460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003493

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGAAGATGAGCGATCACCACCCTCTTCTTGTAAGACATGGAATCAGCAAGAACTCAAAAAGGGGAGCGGAAAAGGAAATCAGAGAGCCAAGAAAGAAGTCGAGAATATGGCTCGGAACGTTGCTACAGCCGAAATGGCAGCTCGAGCTCACGATGTTGCAGCTCTGACGATCAAAGGCCGCTCGGCTTATCTCAACTTCCCTGAGCTAGCTCAGGAACTTCCTTGTGCCGCTAGCTCATTGCCGAAAGACATTCAAGCTGCTGCAGCTAAAGCTGCAGCTCTTAGCTACCCTAGCTGCAGCAGCAGCAGTCATGAAGCTCATGAATCCAAAACCGAACCGGCTCAAGATTCATTGTCTTCATCAAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

125

Amino Acids

13.2

Weight (kDa)

8.45

Isoelectric Point (pI)

57.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77200 AT2G25820 AT2G35700 AT3G16280 AT3G16280 AT3G60490 AT4G16750 AT4G32800
fragaria_vesca	FvH4_5g19440 FvH4_5g19460
malus_domestica	MD04G1060400.v1.1 MD06G1053600.v1.1
prunus_persica	Prupe.5G065300_v2.0.a1
pyrus_communis	pycom04g05400 pycom06g04520
rosa_chinensis	RchiOBHm_Chr7g0203971 RchiOBHm_Chr7g0204031
rosa_laevigata	RLG00000003493 RLG00000003495
rosa_multiflora	Rmu_sc0001311.1_g000005 Rmu_sc0001843.1_g000006 Rmu_sc0004074.1_g000008
rosa_roxburghii	Rroxscaffold_3G00253410 Rroxscaffold_3G00253430
rosa_rugosa	Rorug07G0074800 Rorug07G0079700 Rorug07G0080000
rosa_samantha	Rh7AG209700 Rh7AG210000 Rh7BG203400 Rh7BG208400 Rh7BG208500 Rh7CG222200 Rh7CG222500 Rh7DG216700
rosa_wichuraiana	Rw7G018260 Rw7G018280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	69, 183
AciI	CCGC	3 cut(s)	69, 181, 231
AclI	AACGTT	1 cut(s)	120
AgsI	TTSAA	1 cut(s)	257
Alw21I	GWGCWC	1 cut(s)	151
Ama87I	CYCGRG	1 cut(s)	144
AoxI	GGCC	1 cut(s)	178
AsuHPI	GGTGA	1 cut(s)	9
AsuNHI	GCTAGC	2 cut(s)	208, 233
AvaI	CYCGRG	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	151
BbsI	GAAGAC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	151
BfaI	CTAG	3 cut(s)	209, 234, 294
BfmI	CTRYAG	4 cut(s)	126, 264, 276, 298
BglI	GCCNNNNNGGC	1 cut(s)	137
BmeT110I	CYCGRG	1 cut(s)	144
BmtI	GCTAGC	2 cut(s)	212, 237
BpiI	GAAGAC	1 cut(s)	351
Bpu10I	CCTNAGC	2 cut(s)	204, 213
BpuEI	CTTGAG	1 cut(s)	330
Bse118I	RCCGGY	1 cut(s)	340
Bse3DI	GCAATG	1 cut(s)	239
BseMI	GCAATG	1 cut(s)	239
BseMII	CTCAG	2 cut(s)	195, 227
BshFI	GGCC	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	151
BsiHKCI	CYCGRG	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	341
BsnI	GGCC	1 cut(s)	180
BsoBI	CYCGRG	1 cut(s)	144
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp143I	GATC	2 cut(s)	14, 171
BspACI	CCGC	3 cut(s)	69, 181, 231
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	2 cut(s)	196, 226
BspHI	TCATGA	2 cut(s)	313, 322
BspMAI	CTGCAG	3 cut(s)	268, 280, 302
BspOI	GCTAGC	2 cut(s)	212, 237
BsrBI	CCGCTC	2 cut(s)	69, 183
BsrDI	GCAATG	1 cut(s)	239
BsrFI	RCCGGY	1 cut(s)	340
BssAI	RCCGGY	1 cut(s)	340
BssMI	GATC	2 cut(s)	14, 171
Bst6I	CTCTTC	1 cut(s)	31
BstC8I	GCNNGC	2 cut(s)	210, 235
BstDEI	CTNAG	3 cut(s)	204, 213, 284
BstKTI	GATC	2 cut(s)	17, 174
BstMBI	GATC	2 cut(s)	14, 171
BstMWI	GCNNNNNNNGC	8 cut(s)	137, 146, 266, 272, 275, 294, 303, 306
BstSFI	CTRYAG	4 cut(s)	126, 264, 276, 298
BstV2I	GAAGAC	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	180
Cac8I	GCNNGC	2 cut(s)	210, 235
CciI	TCATGA	2 cut(s)	313, 322
Cfr10I	RCCGGY	1 cut(s)	340
CviAII	CATG	3 cut(s)	39, 314, 323
DdeI	CTNAG	3 cut(s)	204, 213, 284
DpnI	GATC	2 cut(s)	16, 173
DpnII	GATC	2 cut(s)	14, 171
Eam1104I	CTCTTC	1 cut(s)	31
EarI	CTCTTC	1 cut(s)	31
Ecl136II	GAGCTC	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	151
Eco53kI	GAGCTC	1 cut(s)	149
Eco88I	CYCGRG	1 cut(s)	144
EcoICRI	GAGCTC	1 cut(s)	149
EcoT38I	GRGCYC	1 cut(s)	151
FaeI	CATG	3 cut(s)	42, 317, 326
FaiI	YATR	4 cut(s)	40, 110, 315, 324
FatI	CATG	3 cut(s)	38, 313, 322
FriOI	GRGCYC	1 cut(s)	151
FspBI	CTAG	3 cut(s)	209, 234, 294
HaeIII	GGCC	1 cut(s)	180
HapII	CCGG	1 cut(s)	341
Hin1II	CATG	3 cut(s)	42, 317, 326
HinfI	GANTC	3 cut(s)	43, 326, 350
HpaII	CCGG	1 cut(s)	341
HphI	GGTGA	1 cut(s)	9
Hpy188I	TCNGA	3 cut(s)	84, 117, 168
Hpy188III	TCNNGA	6 cut(s)	103, 152, 215, 314, 323, 347
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	4 cut(s)	161, 266, 278, 300
HpyF10VI	GCNNNNNNNGC	8 cut(s)	137, 146, 266, 272, 275, 294, 303, 306
HpyF3I	CTNAG	3 cut(s)	204, 213, 284
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	3 cut(s)	42, 317, 326
Kzo9I	GATC	2 cut(s)	14, 171
LmnI	GCTCC	1 cut(s)	66
LpnPI	CCDG	3 cut(s)	200, 216, 354
MaeI	CTAG	3 cut(s)	209, 234, 294
MaeII	ACGT	1 cut(s)	120
MalI	GATC	2 cut(s)	16, 173
MbiI	CCGCTC	2 cut(s)	69, 183
MboI	GATC	2 cut(s)	14, 171
MboII	GAAGA	3 cut(s)	17, 18, 351
MhlI	GDGCHC	1 cut(s)	151
MnlI	CCTC	1 cut(s)	34
MspI	CCGG	1 cut(s)	341
MwoI	GCNNNNNNNGC	8 cut(s)	137, 146, 266, 272, 275, 294, 303, 306
NdeII	GATC	2 cut(s)	14, 171
NheI	GCTAGC	2 cut(s)	208, 233
NlaIII	CATG	3 cut(s)	42, 317, 326
NmeAIII	GCCGAG	1 cut(s)	164
PaeR7I	CTCGAG	1 cut(s)	144
PagI	TCATGA	2 cut(s)	313, 322
PfeI	GAWTC	3 cut(s)	43, 326, 350
Psp124BI	GAGCTC	1 cut(s)	151
Psp1406I	AACGTT	1 cut(s)	120
PspXI	VCTCGAGB	1 cut(s)	144
PstI	CTGCAG	3 cut(s)	268, 280, 302
SacI	GAGCTC	1 cut(s)	151
Sau3AI	GATC	2 cut(s)	14, 171
SduI	GDGCHC	1 cut(s)	151
SfcI	CTRYAG	4 cut(s)	126, 264, 276, 298
Sfr274I	CTCGAG	1 cut(s)	144
SlaI	CTCGAG	1 cut(s)	144
SmlI	CTYRAG	2 cut(s)	144, 345
SmoI	CTYRAG	2 cut(s)	144, 345
SsiI	CCGC	3 cut(s)	69, 181, 231
SspMI	CTAG	3 cut(s)	209, 234, 294
SstI	GAGCTC	1 cut(s)	151
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	2 cut(s)	102, 145
TauI	GCSGC	2 cut(s)	183, 233
TfiI	GAWTC	3 cut(s)	43, 326, 350
TspDTI	ATGAA	4 cut(s)	330, 339, 342, 351
XhoI	CTCGAG	1 cut(s)	144
XspI	CTAG	3 cut(s)	209, 234, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.