Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003146

Physical Location & Seq

Genomic Coordinates Reverse (-)

11295238 .. 11295834

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g19460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGAATCAGTAATAACTCAAAACGGGGAGCGGAAAAGCAGTGAAGAAGGTAGTGAGCAGAAACCAACGTATAGAGGAGTTCGAAGGCGTGAATGGGGGAAATGGGTATCAGAAATCAGAGAACCGAGAAAGAAGTCCAGAATTTGGCTCGGAACTTTTGCTACAGCGGAAATGGCTGCGCGAGCTCACGACGTCGCAGCTCTGACGATCAAAGGCCGCTCGGCTCATCTCAACTTCCCTGAGCTAGCTCAGGAGCTTCCTCGTGCCGCTAGCTCATCGCCGAAAGACATTCAAGCCGCTGCAGCTAAAGCTGCTGCTCTTAGTTACCCTAGCTGCAGCAGCACGGTCAGCAGCAGCAGCAGCAGCAGCAGCAGTCATGAAGCTCAAGAACACTACGCCGAACCGGCTCAAGATTCATCACCTTCGGAAACAATAAATGATGACACATTTTTTGACCTTCCTGATCTGCTGTTAGACGTTGGACATTATCGTAGTGATGATGCCTACTGTTTCTCGATAGTTGATACAAGTATCAGTCTAGAAGAGCCTTTCTTATGGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

188

Amino Acids

20.62

Weight (kDa)

5.07

Isoelectric Point (pI)

64.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	23 - 72	2.7e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77200 AT2G25820 AT2G35700 AT3G16280 AT3G16280 AT3G60490 AT4G16750 AT4G32800
fragaria_vesca	FvH4_5g19440 FvH4_5g19460
malus_domestica	MD04G1060400.v1.1 MD06G1053600.v1.1
prunus_persica	Prupe.5G065300_v2.0.a1
pyrus_communis	pycom04g05400 pycom06g04520
rosa_chinensis	RchiOBHm_Chr7g0203971 RchiOBHm_Chr7g0204031
rosa_laevigata	RLG00000003493 RLG00000003495
rosa_multiflora	Rmu_sc0001311.1_g000005 Rmu_sc0001843.1_g000006 Rmu_sc0004074.1_g000008
rosa_roxburghii	Rroxscaffold_3G00253410 Rroxscaffold_3G00253430
rosa_rugosa	Rorug07G0074800 Rorug07G0079700 Rorug07G0080000
rosa_samantha	Rh7AG209700 Rh7AG210000 Rh7BG203400 Rh7BG208400 Rh7BG208500 Rh7CG222200 Rh7CG222500 Rh7DG216700
rosa_wichuraiana	Rw7G018260 Rw7G018280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	195
AccB7I	CCANNNNNTGG	1 cut(s)	144
AccBSI	CCGCTC	2 cut(s)	31, 219
AccII	CGCG	1 cut(s)	181
AciI	CCGC	5 cut(s)	31, 167, 217, 267, 297
AcsI	RAATTY	1 cut(s)	141
AcyI	GRCGYC	1 cut(s)	192
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	1 cut(s)	293
Alw21I	GWGCWC	1 cut(s)	187
AoxI	GGCC	1 cut(s)	214
ApoI	RAATTY	1 cut(s)	141
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
AspLEI	GCGC	1 cut(s)	181
AsuHPI	GGTGA	1 cut(s)	411
AsuII	TTCGAA	1 cut(s)	82
AsuNHI	GCTAGC	2 cut(s)	244, 269
BanII	GRGCYC	1 cut(s)	187
BauI	CACGAG	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	187
BfaI	CTAG	4 cut(s)	245, 270, 330, 539
BfmI	CTRYAG	3 cut(s)	162, 300, 334
BglI	GCCNNNNNGGC	1 cut(s)	404
BmsI	GCATC	1 cut(s)	490
BmtI	GCTAGC	2 cut(s)	248, 273
Bpu10I	CCTNAGC	2 cut(s)	240, 249
Bpu14I	TTCGAA	1 cut(s)	82
BpuEI	CTTGAG	2 cut(s)	369, 393
BsaHI	GRCGYC	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse118I	RCCGGY	1 cut(s)	403
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMII	CTCAG	2 cut(s)	231, 263
BseRI	GAGGAG	1 cut(s)	90
Bsh1236I	CGCG	1 cut(s)	181
BshFI	GGCC	1 cut(s)	216
BsiHKAI	GWGCWC	1 cut(s)	187
BsiSI	CCGG	1 cut(s)	404
BslI	CCNNNNNNNGG	1 cut(s)	144
BsnI	GGCC	1 cut(s)	216
Bsp119I	TTCGAA	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	2 cut(s)	207, 463
BspACI	CCGC	5 cut(s)	31, 167, 217, 267, 297
BspANI	GGCC	1 cut(s)	216
BspCNI	CTCAG	2 cut(s)	232, 262
BspFNI	CGCG	1 cut(s)	181
BspHI	TCATGA	1 cut(s)	376
BspMAI	CTGCAG	2 cut(s)	304, 338
BspOI	GCTAGC	2 cut(s)	248, 273
BspQI	GCTCTTC	1 cut(s)	537
BspT104I	TTCGAA	1 cut(s)	82
BsrBI	CCGCTC	2 cut(s)	31, 219
BsrFI	RCCGGY	1 cut(s)	403
BssAI	RCCGGY	1 cut(s)	403
BssMI	GATC	2 cut(s)	207, 463
BssNI	GRCGYC	1 cut(s)	192
BssSI	CACGAG	1 cut(s)	261
Bst2BI	CACGAG	1 cut(s)	261
Bst4CI	ACNGT	2 cut(s)	346, 509
Bst6I	CTCTTC	1 cut(s)	537
BstACI	GRCGYC	1 cut(s)	192
BstBI	TTCGAA	1 cut(s)	82
BstC8I	GCNNGC	3 cut(s)	183, 246, 271
BstDEI	CTNAG	3 cut(s)	240, 249, 320
BstFNI	CGCG	1 cut(s)	181
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	2 cut(s)	210, 466
BstMBI	GATC	2 cut(s)	207, 463
BstSFI	CTRYAG	3 cut(s)	162, 300, 334
BstUI	CGCG	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	216
BtgZI	GCGATG	1 cut(s)	261
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	1 cut(s)	46
Cac8I	GCNNGC	3 cut(s)	183, 246, 271
CciI	TCATGA	1 cut(s)	376
CfoI	GCGC	1 cut(s)	181
Cfr10I	RCCGGY	1 cut(s)	403
CviAII	CATG	1 cut(s)	377
DdeI	CTNAG	3 cut(s)	240, 249, 320
DpnI	GATC	2 cut(s)	209, 465
DpnII	GATC	2 cut(s)	207, 463
Eam1104I	CTCTTC	1 cut(s)	537
EarI	CTCTTC	1 cut(s)	537
Ecl136II	GAGCTC	1 cut(s)	185
Eco24I	GRGCYC	1 cut(s)	187
Eco53kI	GAGCTC	1 cut(s)	185
EcoICRI	GAGCTC	1 cut(s)	185
EcoT38I	GRGCYC	1 cut(s)	187
FaeI	CATG	1 cut(s)	380
FaiI	YATR	3 cut(s)	72, 378, 556
FatI	CATG	1 cut(s)	376
FriOI	GRGCYC	1 cut(s)	187
FspBI	CTAG	4 cut(s)	245, 270, 330, 539
GlaI	GCGC	1 cut(s)	180
HaeIII	GGCC	1 cut(s)	216
HapII	CCGG	1 cut(s)	404
HhaI	GCGC	1 cut(s)	181
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	1 cut(s)	380
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HinfI	GANTC	2 cut(s)	5, 413
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	1 cut(s)	411
Hpy188I	TCNGA	5 cut(s)	112, 119, 152, 204, 427
Hpy188III	TCNNGA	9 cut(s)	138, 188, 251, 377, 386, 410, 461, 514, 539
Hpy99I	CGWCG	2 cut(s)	194, 197
HpyAV	CCTTC	4 cut(s)	41, 78, 432, 467
HpyCH4III	ACNGT	2 cut(s)	346, 509
HpyCH4IV	ACGT	3 cut(s)	68, 192, 477
HpyCH4V	TGCA	2 cut(s)	302, 336
HpyF3I	CTNAG	3 cut(s)	240, 249, 320
HpySE526I	ACGT	3 cut(s)	68, 192, 477
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	1 cut(s)	380
HspAI	GCGC	1 cut(s)	179
Kzo9I	GATC	2 cut(s)	207, 463
LguI	GCTCTTC	1 cut(s)	537
LmnI	GCTCC	2 cut(s)	28, 253
LpnPI	CCDG	5 cut(s)	151, 236, 252, 417, 474
LweI	GCATC	1 cut(s)	490
MaeI	CTAG	4 cut(s)	245, 270, 330, 539
MaeII	ACGT	3 cut(s)	68, 192, 477
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	2 cut(s)	209, 465
MbiI	CCGCTC	2 cut(s)	31, 219
MboI	GATC	2 cut(s)	207, 463
MboII	GAAGA	2 cut(s)	56, 554
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	1 cut(s)	141
MmeI	TCCRAC	1 cut(s)	460
MnlI	CCTC	2 cut(s)	68, 270
MspA1I	CMGCKG	2 cut(s)	167, 299
MspI	CCGG	1 cut(s)	404
MvnI	CGCG	1 cut(s)	181
NdeII	GATC	2 cut(s)	207, 463
NheI	GCTAGC	2 cut(s)	244, 269
NlaIII	CATG	1 cut(s)	380
NmeAIII	GCCGAG	1 cut(s)	200
NspV	TTCGAA	1 cut(s)	82
PagI	TCATGA	1 cut(s)	376
PciSI	GCTCTTC	1 cut(s)	537
PfeI	GAWTC	2 cut(s)	5, 413
PflMI	CCANNNNNTGG	1 cut(s)	144
Psp124BI	GAGCTC	1 cut(s)	187
PsrI	GAACNNNNNNTAC	2 cut(s)	145, 177
PstI	CTGCAG	2 cut(s)	304, 338
SacI	GAGCTC	1 cut(s)	187
SapI	GCTCTTC	1 cut(s)	537
Sau3AI	GATC	2 cut(s)	207, 463
SduI	GDGCHC	1 cut(s)	187
SfaNI	GCATC	1 cut(s)	490
SfcI	CTRYAG	3 cut(s)	162, 300, 334
SfuI	TTCGAA	1 cut(s)	82
SmlI	CTYRAG	2 cut(s)	384, 408
SmoI	CTYRAG	2 cut(s)	384, 408
Sse9I	AATT	1 cut(s)	141
SsiI	CCGC	5 cut(s)	31, 167, 217, 267, 297
SspMI	CTAG	4 cut(s)	245, 270, 330, 539
SstI	GAGCTC	1 cut(s)	187
TaaI	ACNGT	2 cut(s)	346, 509
TaiI	ACGT	3 cut(s)	71, 195, 480
TaqI	TCGA	2 cut(s)	82, 515
TasI	AATT	1 cut(s)	141
TauI	GCSGC	3 cut(s)	219, 269, 299
TfiI	GAWTC	2 cut(s)	5, 413
TscAI	CASTG	1 cut(s)	46
TspDTI	ATGAA	2 cut(s)	393, 405
TspRI	CASTG	1 cut(s)	46
Van91I	CCANNNNNTGG	1 cut(s)	144
XapI	RAATTY	1 cut(s)	141
XbaI	TCTAGA	1 cut(s)	538
XspI	CTAG	4 cut(s)	245, 270, 330, 539
ZraI	GACGTC	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.