Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0003146

Physical Location & Seq

Genomic Coordinates Reverse (-)

5831202 .. 5831960

Gene Structure 759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g04520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGAAGAAGAACAATTCAATTTTATAGACTGTGAGGCTCAAACCACATCTTCTTCTTACTCAAATTCTACCACCTCTCAATCACAAAAGTTTAGCAAGAGATCATCATCATCAAATCAACTAGAACTACTTGTTGGTCATCAAAAAGCTGCTACTACATTGACTACAAATGATGATGATGATGATGATCAAATTAGTAAGAAGAAAGCAAAGATTAAAAAAAGGATTAATGGTGATGGGAGGCAGCAGAGGCATCCTCATCATCCAACGTATAGGGGAGTGAGAATGCGTCAGTGGGGCAAATGGGTCTCAGAAATCCGAGAGCCAAGAAAGAAGTCAAGAATTTGGCTTGGAACTTTTCCCATCCCCGAAATGGCCGCTCGAGCGCACGATGTCGCCGCTCTGACGATCAAAGGCAGCTCTGCTGTTCTCAACTTCCCTGAGCTAGCTCAAGAGCTTCCTATTCCGGCTTCTGCCTCGCCAAAGGACATCCAAGCTGCTGCTGCTAAGGCAGCTGCTCTTACCTTCCCAAGCAGCAGCCTTGAACAGGAAGCGGAAGTCGAGACAGAGGTGATGAGCCAAGCTGTTCACGACAGTAGTCCTCATGATTCATCATCAACTTCACCATCAACCAATTACAATGATGACATGTTGTTTGACCTCCCTGATCTGCTTTTAGATGTTGGGCATCACAGTGATCATGGATTTATTTTCTCTGTGCCATGGCTTGATGAAGAGCCTGAGTTCTTGTGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

253

Amino Acids

28.14

Weight (kDa)

5.28

Isoelectric Point (pI)

52.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	90 - 139	2.2e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77200 AT2G25820 AT2G35700 AT3G16280 AT3G16280 AT3G60490 AT4G16750 AT4G32800
fragaria_vesca	FvH4_5g19440 FvH4_5g19460
malus_domestica	MD04G1060400.v1.1 MD06G1053600.v1.1
prunus_persica	Prupe.5G065300_v2.0.a1
pyrus_communis	pycom04g05400 pycom06g04520
rosa_chinensis	RchiOBHm_Chr7g0203971 RchiOBHm_Chr7g0204031
rosa_laevigata	RLG00000003493 RLG00000003495
rosa_multiflora	Rmu_sc0001311.1_g000005 Rmu_sc0001843.1_g000006 Rmu_sc0004074.1_g000008
rosa_roxburghii	Rroxscaffold_3G00253410 Rroxscaffold_3G00253430
rosa_rugosa	Rorug07G0074800 Rorug07G0079700 Rorug07G0080000
rosa_samantha	Rh7AG209700 Rh7AG210000 Rh7BG203400 Rh7BG208400 Rh7BG208500 Rh7CG222200 Rh7CG222500 Rh7DG216700
rosa_wichuraiana	Rw7G018260 Rw7G018280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	380, 401
AciI	CCGC	3 cut(s)	378, 399, 554
AcoI	YGGCCR	1 cut(s)	375
AcsI	RAATTY	2 cut(s)	64, 342
AfiI	CCNNNNNNNGG	2 cut(s)	373, 547
AflIII	ACRYGT	1 cut(s)	648
AgsI	TTSAA	2 cut(s)	19, 545
AjuI	GAANNNNNNNTTGG	2 cut(s)	117, 149
AluBI	AGCT	8 cut(s)	149, 420, 445, 449, 457, 497, 515, 584
AluI	AGCT	8 cut(s)	149, 420, 445, 449, 457, 497, 515, 584
Alw26I	GTCTC	2 cut(s)	313, 557
Ama87I	CYCGRG	1 cut(s)	381
AoxI	GGCC	1 cut(s)	375
ApoI	RAATTY	2 cut(s)	64, 342
ArsI	GACNNNNNNTTYG	2 cut(s)	638, 670
AseI	ATTAAT	1 cut(s)	228
AspLEI	GCGC	1 cut(s)	388
AsuHPI	GGTGA	3 cut(s)	245, 583, 615
AsuNHI	GCTAGC	1 cut(s)	445
AvaI	CYCGRG	1 cut(s)	381
BccI	CCATC	3 cut(s)	230, 371, 634
BclI	TGATCA	2 cut(s)	187, 697
BcoDI	GTCTC	2 cut(s)	313, 557
BfaI	CTAG	2 cut(s)	122, 446
BmeT110I	CYCGRG	1 cut(s)	381
BmsI	GCATC	2 cut(s)	262, 697
BmtI	GCTAGC	1 cut(s)	449
BoxI	GACNNNNGTC	1 cut(s)	597
BplI	GAGNNNNNCTC	2 cut(s)	241, 273
Bpu10I	CCTNAGC	2 cut(s)	441, 507
BpuEI	CTTGAG	1 cut(s)	435
BsaBI	GATNNNNATC	2 cut(s)	106, 186
BsaI	GGTCTC	1 cut(s)	313
BsaJI	CCNNGG	1 cut(s)	722
Bsc4I	CCNNNNNNNGG	2 cut(s)	373, 547
Bse8I	GATNNNNATC	2 cut(s)	106, 186
BseDI	CCNNGG	1 cut(s)	722
BseGI	GGATG	4 cut(s)	253, 262, 363, 489
BseJI	GATNNNNATC	2 cut(s)	106, 186
BseLI	CCNNNNNNNGG	2 cut(s)	373, 547
BseMII	CTCAG	3 cut(s)	324, 432, 732
BshFI	GGCC	1 cut(s)	377
BsiHKCI	CYCGRG	1 cut(s)	381
BsiSI	CCGG	1 cut(s)	467
BslI	CCNNNNNNNGG	2 cut(s)	373, 547
BsmAI	GTCTC	2 cut(s)	313, 557
BsmI	GAATGC	1 cut(s)	291
BsnI	GGCC	1 cut(s)	377
Bso31I	GGTCTC	1 cut(s)	313
BsoBI	CYCGRG	1 cut(s)	381
Bsp143I	GATC	5 cut(s)	101, 187, 408, 667, 697
Bsp19I	CCATGG	1 cut(s)	722
BspACI	CCGC	3 cut(s)	378, 399, 554
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	3 cut(s)	323, 433, 733
BspHI	TCATGA	1 cut(s)	604
BspOI	GCTAGC	1 cut(s)	449
BspQI	GCTCTTC	1 cut(s)	729
BspTNI	GGTCTC	1 cut(s)	313
BsrBI	CCGCTC	2 cut(s)	380, 401
BssECI	CCNNGG	1 cut(s)	722
BssMI	GATC	5 cut(s)	101, 187, 408, 667, 697
BssT1I	CCWWGG	1 cut(s)	722
Bst4CI	ACNGT	3 cut(s)	32, 596, 695
Bst6I	CTCTTC	1 cut(s)	729
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	4 cut(s)	310, 441, 507, 741
BstDSI	CCRYGG	1 cut(s)	722
BstENI	CCTNNNNNAGG	1 cut(s)	545
BstF5I	GGATG	4 cut(s)	253, 262, 363, 489
BstHHI	GCGC	1 cut(s)	388
BstKTI	GATC	5 cut(s)	104, 190, 411, 670, 700
BstMAI	GTCTC	2 cut(s)	313, 557
BstMBI	GATC	5 cut(s)	101, 187, 408, 667, 697
BstMWI	GCNNNNNNNGC	5 cut(s)	250, 383, 503, 509, 512
BstNSI	RCATGY	1 cut(s)	652
BstPAI	GACNNNNGTC	1 cut(s)	597
BsuRI	GGCC	1 cut(s)	377
BtgI	CCRYGG	1 cut(s)	722
BtsCI	GGATG	4 cut(s)	253, 262, 363, 489
BtsIMutI	CAGTG	2 cut(s)	299, 700
Cac8I	GCNNGC	1 cut(s)	447
CciI	TCATGA	1 cut(s)	604
CfoI	GCGC	1 cut(s)	388
CseI	GACGC	1 cut(s)	278
CviAII	CATG	4 cut(s)	605, 649, 701, 723
DdeI	CTNAG	4 cut(s)	310, 441, 507, 741
DpnI	GATC	5 cut(s)	103, 189, 410, 669, 699
DpnII	GATC	5 cut(s)	101, 187, 408, 667, 697
EaeI	YGGCCR	1 cut(s)	375
Eam1104I	CTCTTC	1 cut(s)	729
EarI	CTCTTC	1 cut(s)	729
Eco130I	CCWWGG	1 cut(s)	722
Eco31I	GGTCTC	1 cut(s)	313
Eco88I	CYCGRG	1 cut(s)	381
EcoNI	CCTNNNNNAGG	1 cut(s)	545
EcoT14I	CCWWGG	1 cut(s)	722
ErhI	CCWWGG	1 cut(s)	722
FaeI	CATG	4 cut(s)	608, 652, 704, 726
FaiI	YATR	6 cut(s)	26, 273, 606, 650, 702, 724
FatI	CATG	4 cut(s)	604, 648, 700, 722
FbaI	TGATCA	2 cut(s)	187, 697
FokI	GGATG	4 cut(s)	240, 249, 350, 476
FspBI	CTAG	2 cut(s)	122, 446
GlaI	GCGC	1 cut(s)	387
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	1 cut(s)	467
HgaI	GACGC	1 cut(s)	278
HhaI	GCGC	1 cut(s)	388
Hin1II	CATG	4 cut(s)	608, 652, 704, 726
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HinfI	GANTC	1 cut(s)	608
HpaII	CCGG	1 cut(s)	467
HphI	GGTGA	3 cut(s)	245, 583, 615
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	3 cut(s)	313, 320, 405
Hpy188III	TCNNGA	5 cut(s)	339, 452, 562, 590, 605
Hpy8I	GTNNAC	1 cut(s)	589
HpyAV	CCTTC	1 cut(s)	535
HpyCH4III	ACNGT	3 cut(s)	32, 596, 695
HpyCH4IV	ACGT	1 cut(s)	269
HpyF10VI	GCNNNNNNNGC	5 cut(s)	250, 383, 503, 509, 512
HpyF3I	CTNAG	4 cut(s)	310, 441, 507, 741
HpySE526I	ACGT	1 cut(s)	269
Hsp92II	CATG	4 cut(s)	608, 652, 704, 726
HspAI	GCGC	1 cut(s)	386
Ksp22I	TGATCA	2 cut(s)	187, 697
Kzo9I	GATC	5 cut(s)	101, 187, 408, 667, 697
LguI	GCTCTTC	1 cut(s)	729
LpnPI	CCDG	5 cut(s)	453, 480, 533, 678, 753
LweI	GCATC	2 cut(s)	262, 697
MaeI	CTAG	2 cut(s)	122, 446
MaeII	ACGT	1 cut(s)	269
MalI	GATC	5 cut(s)	103, 189, 410, 669, 699
MbiI	CCGCTC	2 cut(s)	380, 401
MboI	GATC	5 cut(s)	101, 187, 408, 667, 697
MboII	GAAGA	6 cut(s)	17, 20, 42, 45, 214, 746
MluCI	AATT	6 cut(s)	14, 19, 64, 192, 342, 634
MmeI	TCCRAC	1 cut(s)	290
MnlI	CCTC	9 cut(s)	28, 85, 234, 243, 267, 487, 562, 612, 671
MseI	TTAA	2 cut(s)	216, 228
MslI	CAYNNNNRTG	1 cut(s)	693
MspA1I	CMGCKG	1 cut(s)	515
MspI	CCGG	1 cut(s)	467
Mva1269I	GAATGC	1 cut(s)	291
MwoI	GCNNNNNNNGC	5 cut(s)	250, 383, 503, 509, 512
NcoI	CCATGG	1 cut(s)	722
NdeII	GATC	5 cut(s)	101, 187, 408, 667, 697
NheI	GCTAGC	1 cut(s)	445
NlaIII	CATG	4 cut(s)	608, 652, 704, 726
NspI	RCATGY	1 cut(s)	652
PaeR7I	CTCGAG	1 cut(s)	381
PagI	TCATGA	1 cut(s)	604
PciI	ACATGT	1 cut(s)	648
PciSI	GCTCTTC	1 cut(s)	729
PctI	GAATGC	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	608
PscI	ACATGT	1 cut(s)	648
PshAI	GACNNNNGTC	1 cut(s)	597
PshBI	ATTAAT	1 cut(s)	228
PspXI	VCTCGAGB	1 cut(s)	381
PvuII	CAGCTG	1 cut(s)	515
RseI	CAYNNNNRTG	1 cut(s)	693
SapI	GCTCTTC	1 cut(s)	729
SaqAI	TTAA	2 cut(s)	216, 228
Sau3AI	GATC	5 cut(s)	101, 187, 408, 667, 697
SfaNI	GCATC	2 cut(s)	262, 697
Sfr274I	CTCGAG	1 cut(s)	381
SlaI	CTCGAG	1 cut(s)	381
SmiMI	CAYNNNNRTG	1 cut(s)	693
SmlI	CTYRAG	2 cut(s)	381, 450
SmoI	CTYRAG	2 cut(s)	381, 450
Sse9I	AATT	6 cut(s)	14, 19, 64, 192, 342, 634
SsiI	CCGC	3 cut(s)	378, 399, 554
SspMI	CTAG	2 cut(s)	122, 446
StyI	CCWWGG	1 cut(s)	722
TaaI	ACNGT	3 cut(s)	32, 596, 695
TaiI	ACGT	1 cut(s)	272
TaqI	TCGA	2 cut(s)	382, 561
TasI	AATT	6 cut(s)	14, 19, 64, 192, 342, 634
TauI	GCSGC	2 cut(s)	380, 401
TfiI	GAWTC	1 cut(s)	608
Tru1I	TTAA	2 cut(s)	216, 228
Tru9I	TTAA	2 cut(s)	216, 228
TscAI	CASTG	2 cut(s)	299, 700
TspDTI	ATGAA	2 cut(s)	600, 747
TspRI	CASTG	2 cut(s)	299, 700
VspI	ATTAAT	1 cut(s)	228
XagI	CCTNNNNNAGG	1 cut(s)	545
XapI	RAATTY	2 cut(s)	64, 342
XceI	RCATGY	1 cut(s)	652
XcmI	CCANNNNNNNNNTGG	1 cut(s)	370
XhoI	CTCGAG	1 cut(s)	381
XspI	CTAG	2 cut(s)	122, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.