Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0003146

Physical Location & Seq

Genomic Coordinates Reverse (-)

7891631 .. 7892413

Gene Structure 783 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1060400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGAAGAAGAACAATTCAAGGCTCAGACCACATCTTCTTCTTACTCGAATTCTACCACCTCTCCTTTTGCAGAATCTCCGGCACAAAAAATTAGAGAGAGATCATCATCGTCGTCGTCATCATCAAATCAACTACAACTACTTGATGGTCATGAGAAAGCTACTACTTCTAGTACTACTAATGATGATGATGATGATCAAATTAGTAAGAAGAAAGCAAAGATTAACAATGGCATTAATGGTGATGGGAGGCAGCAGAGGCATCCTCATAAACCAACGTATAGGGGAGTGAGAATGCGTCAATGGGGCAAATGGGTCTCAGAAATCCGAGAGCCAAGAAAGAAGTCAAGAATTTGGCTTGGAACTTTTCCCACCCCCGAAATGGCCGCTCGCGCACATGATGTCGCCGCTCTTACTATCAAAGGCCGCTCTGCGGTGCTCAACTTCCCTGAGCTGGCCCAAGAGCTTCCTGTTCCGGCTTCCGCCTTGCCAAAGGACATCCAAGTTGCTGCTGCCAAGGCAGCTGCAAGTACCTACCCAACTAGAAGCTGCAGAAGCAGCAGCCTTGAAGCAGAAGCTGAAGCCGAAACAGAGCTGATCAGCCAAGCTGTTCATGACAGCAGTACTCATGATTCATCATCAACTTCCCCATCAAACAGTTACAACGATGACATGTTTTTTGACCTTCCTGATCTGCTTTTAGATGTTGGGCATCACAGTGATCCTGGGTTTCGCTTCTCTGTGCCATGGCTTGATGAAGAGCCGGAGTTCTTGTGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

261

Amino Acids

28.8

Weight (kDa)

5.43

Isoelectric Point (pI)

56.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	93 - 142	1.4e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77200 AT2G25820 AT2G35700 AT3G16280 AT3G16280 AT3G60490 AT4G16750 AT4G32800
fragaria_vesca	FvH4_5g19440 FvH4_5g19460
malus_domestica	MD04G1060400.v1.1 MD06G1053600.v1.1
prunus_persica	Prupe.5G065300_v2.0.a1
pyrus_communis	pycom04g05400 pycom06g04520
rosa_chinensis	RchiOBHm_Chr7g0203971 RchiOBHm_Chr7g0204031
rosa_laevigata	RLG00000003493 RLG00000003495
rosa_multiflora	Rmu_sc0001311.1_g000005 Rmu_sc0001843.1_g000006 Rmu_sc0004074.1_g000008
rosa_roxburghii	Rroxscaffold_3G00253410 Rroxscaffold_3G00253430
rosa_rugosa	Rorug07G0074800 Rorug07G0079700 Rorug07G0080000
rosa_samantha	Rh7AG209700 Rh7AG210000 Rh7BG203400 Rh7BG208400 Rh7BG208500 Rh7CG222200 Rh7CG222500 Rh7DG216700
rosa_wichuraiana	Rw7G018260 Rw7G018280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	389, 410, 429
AccII	CGCG	1 cut(s)	393
AciI	CCGC	5 cut(s)	387, 408, 427, 434, 483
AclWI	GGATC	1 cut(s)	716
AcoI	YGGCCR	1 cut(s)	384
AcsI	RAATTY	2 cut(s)	49, 351
AcuI	CTGAAG	1 cut(s)	600
AfaI	GTAC	3 cut(s)	175, 532, 625
AfiI	CCNNNNNNNGG	3 cut(s)	382, 433, 454
AflIII	ACRYGT	1 cut(s)	672
AgsI	TTSAA	2 cut(s)	19, 569
AjnI	CCWGG	1 cut(s)	724
AluBI	AGCT	8 cut(s)	161, 454, 466, 524, 549, 578, 595, 608
AluI	AGCT	8 cut(s)	161, 454, 466, 524, 549, 578, 595, 608
Alw21I	GWGCWC	1 cut(s)	441
Alw26I	GTCTC	1 cut(s)	322
AlwI	GGATC	1 cut(s)	716
AlwNI	CAGNNNCTG	1 cut(s)	578
AoxI	GGCC	3 cut(s)	384, 424, 456
ApeKI	GCWGC	8 cut(s)	253, 509, 512, 521, 524, 549, 558, 561
ApoI	RAATTY	2 cut(s)	49, 351
ArsI	GACNNNNNNTTYG	2 cut(s)	662, 694
AseI	ATTAAT	1 cut(s)	237
AspLEI	GCGC	1 cut(s)	395
AspS9I	GGNCC	1 cut(s)	457
AsuHPI	GGTGA	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	441
BbvI	GCAGC	8 cut(s)	265, 496, 499, 511, 533, 536, 570, 573
BccI	CCATC	3 cut(s)	140, 239, 658
BciT130I	CCWGG	1 cut(s)	726
BclI	TGATCA	2 cut(s)	196, 597
BcoDI	GTCTC	1 cut(s)	322
BfaI	CTAG	2 cut(s)	171, 543
BfmI	CTRYAG	1 cut(s)	550
BmcAI	AGTACT	2 cut(s)	175, 625
Bme1390I	CCNGG	1 cut(s)	726
BmgT120I	GGNCC	1 cut(s)	457
BmrFI	CCNGG	1 cut(s)	726
BmsI	GCATC	2 cut(s)	271, 721
BplI	GAGNNNNNCTC	2 cut(s)	250, 282
Bpu10I	CCTNAGC	1 cut(s)	450
BsaBI	GATNNNNATC	2 cut(s)	106, 195
BsaI	GGTCTC	1 cut(s)	322
BsaJI	CCNNGG	3 cut(s)	516, 725, 746
BsaXI	ACNNNNNCTCC	3 cut(s)	46, 76, 758
Bsc4I	CCNNNNNNNGG	3 cut(s)	382, 433, 454
Bse8I	GATNNNNATC	2 cut(s)	106, 195
BseBI	CCWGG	1 cut(s)	726
BseDI	CCNNGG	3 cut(s)	516, 725, 746
BseGI	GGATG	2 cut(s)	262, 498
BseJI	GATNNNNATC	2 cut(s)	106, 195
BseLI	CCNNNNNNNGG	3 cut(s)	382, 433, 454
BseMII	CTCAG	3 cut(s)	38, 333, 441
BseXI	GCAGC	8 cut(s)	265, 496, 499, 511, 533, 536, 570, 573
Bsh1236I	CGCG	1 cut(s)	393
BshFI	GGCC	3 cut(s)	386, 426, 458
BsiHKAI	GWGCWC	1 cut(s)	441
BsiSI	CCGG	3 cut(s)	80, 476, 764
BslI	CCNNNNNNNGG	3 cut(s)	382, 433, 454
BsmAI	GTCTC	1 cut(s)	322
BsmI	GAATGC	1 cut(s)	300
BsnI	GGCC	3 cut(s)	386, 426, 458
Bso31I	GGTCTC	1 cut(s)	322
Bsp1286I	GDGCHC	1 cut(s)	441
Bsp143I	GATC	5 cut(s)	101, 196, 597, 691, 721
Bsp19I	CCATGG	1 cut(s)	746
BspACI	CCGC	5 cut(s)	387, 408, 427, 434, 483
BspANI	GGCC	3 cut(s)	386, 426, 458
BspCNI	CTCAG	3 cut(s)	37, 332, 442
BspFNI	CGCG	1 cut(s)	393
BspHI	TCATGA	3 cut(s)	151, 613, 628
BspMAI	CTGCAG	1 cut(s)	554
BspPI	GGATC	1 cut(s)	716
BspQI	GCTCTTC	1 cut(s)	753
BspTNI	GGTCTC	1 cut(s)	322
BsrBI	CCGCTC	3 cut(s)	389, 410, 429
BssECI	CCNNGG	3 cut(s)	516, 725, 746
BssMI	GATC	5 cut(s)	101, 196, 597, 691, 721
BssT1I	CCWWGG	2 cut(s)	516, 746
Bst2UI	CCWGG	1 cut(s)	726
Bst4CI	ACNGT	2 cut(s)	659, 719
Bst6I	CTCTTC	1 cut(s)	753
BstC8I	GCNNGC	2 cut(s)	391, 456
BstDEI	CTNAG	3 cut(s)	24, 319, 450
BstDSI	CCRYGG	1 cut(s)	746
BstF5I	GGATG	2 cut(s)	262, 498
BstFNI	CGCG	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	395
BstKTI	GATC	5 cut(s)	104, 199, 600, 694, 724
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	5 cut(s)	101, 196, 597, 691, 721
BstMWI	GCNNNNNNNGC	6 cut(s)	259, 392, 518, 521, 555, 558
BstNI	CCWGG	1 cut(s)	726
BstNSI	RCATGY	1 cut(s)	676
BstSCI	CCNGG	1 cut(s)	724
BstSFI	CTRYAG	1 cut(s)	550
BstUI	CGCG	1 cut(s)	393
BstV1I	GCAGC	8 cut(s)	265, 496, 499, 511, 533, 536, 570, 573
BsuRI	GGCC	3 cut(s)	386, 426, 458
BtgI	CCRYGG	1 cut(s)	746
BtsCI	GGATG	2 cut(s)	262, 498
BtsIMutI	CAGTG	1 cut(s)	724
Cac8I	GCNNGC	2 cut(s)	391, 456
CaiI	CAGNNNCTG	1 cut(s)	578
CciI	TCATGA	3 cut(s)	151, 613, 628
CfoI	GCGC	1 cut(s)	395
Cfr13I	GGNCC	1 cut(s)	457
CseI	GACGC	1 cut(s)	287
Csp6I	GTAC	3 cut(s)	174, 531, 624
CviAII	CATG	6 cut(s)	152, 398, 614, 629, 673, 747
CviQI	GTAC	3 cut(s)	174, 531, 624
DdeI	CTNAG	3 cut(s)	24, 319, 450
DpnI	GATC	5 cut(s)	103, 198, 599, 693, 723
DpnII	GATC	5 cut(s)	101, 196, 597, 691, 721
EaeI	YGGCCR	1 cut(s)	384
Eam1104I	CTCTTC	1 cut(s)	753
EarI	CTCTTC	1 cut(s)	753
EciI	GGCGGA	1 cut(s)	472
Eco130I	CCWWGG	2 cut(s)	516, 746
Eco31I	GGTCTC	1 cut(s)	322
Eco57I	CTGAAG	1 cut(s)	600
EcoRI	GAATTC	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	724
EcoT14I	CCWWGG	2 cut(s)	516, 746
ErhI	CCWWGG	2 cut(s)	516, 746
FaeI	CATG	6 cut(s)	155, 401, 617, 632, 676, 750
FaiI	YATR	8 cut(s)	153, 270, 282, 399, 615, 630, 674, 748
FatI	CATG	6 cut(s)	151, 397, 613, 628, 672, 746
FbaI	TGATCA	2 cut(s)	196, 597
FokI	GGATG	2 cut(s)	249, 485
FspBI	CTAG	2 cut(s)	171, 543
GlaI	GCGC	1 cut(s)	394
HaeIII	GGCC	3 cut(s)	386, 426, 458
HapII	CCGG	3 cut(s)	80, 476, 764
HgaI	GACGC	1 cut(s)	287
HhaI	GCGC	1 cut(s)	395
Hin1II	CATG	6 cut(s)	155, 401, 617, 632, 676, 750
Hin6I	GCGC	1 cut(s)	393
HinP1I	GCGC	1 cut(s)	393
HinfI	GANTC	2 cut(s)	74, 632
HpaII	CCGG	3 cut(s)	80, 476, 764
HphI	GGTGA	1 cut(s)	254
Hpy188I	TCNGA	3 cut(s)	27, 322, 329
Hpy188III	TCNNGA	5 cut(s)	152, 348, 614, 629, 689
Hpy99I	CGWCG	2 cut(s)	115, 118
HpyAV	CCTTC	1 cut(s)	695
HpyCH4III	ACNGT	2 cut(s)	659, 719
HpyCH4IV	ACGT	1 cut(s)	278
HpyCH4V	TGCA	3 cut(s)	71, 527, 552
HpyF10VI	GCNNNNNNNGC	6 cut(s)	259, 392, 518, 521, 555, 558
HpyF3I	CTNAG	3 cut(s)	24, 319, 450
HpySE526I	ACGT	1 cut(s)	278
Hsp92II	CATG	6 cut(s)	155, 401, 617, 632, 676, 750
HspAI	GCGC	1 cut(s)	393
Ksp22I	TGATCA	2 cut(s)	196, 597
Kzo9I	GATC	5 cut(s)	101, 196, 597, 691, 721
LguI	GCTCTTC	1 cut(s)	753
LpnPI	CCDG	9 cut(s)	93, 440, 462, 483, 489, 702, 711, 738, 777
Lsp1109I	GCAGC	8 cut(s)	265, 496, 499, 511, 533, 536, 570, 573
LweI	GCATC	2 cut(s)	271, 721
MaeI	CTAG	2 cut(s)	171, 543
MaeII	ACGT	1 cut(s)	278
MaeIII	GTNAC	1 cut(s)	659
MalI	GATC	5 cut(s)	103, 198, 599, 693, 723
MbiI	CCGCTC	3 cut(s)	389, 410, 429
MboI	GATC	5 cut(s)	101, 196, 597, 691, 721
MboII	GAAGA	6 cut(s)	17, 20, 27, 30, 223, 770
MhlI	GDGCHC	1 cut(s)	441
MluCI	AATT	5 cut(s)	14, 49, 90, 201, 351
MnlI	CCTC	4 cut(s)	70, 243, 252, 276
MseI	TTAA	2 cut(s)	225, 237
MslI	CAYNNNNRTG	1 cut(s)	717
MspA1I	CMGCKG	1 cut(s)	524
MspI	CCGG	3 cut(s)	80, 476, 764
MspR9I	CCNGG	1 cut(s)	726
Mva1269I	GAATGC	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	726
MvnI	CGCG	1 cut(s)	393
MwoI	GCNNNNNNNGC	6 cut(s)	259, 392, 518, 521, 555, 558
NcoI	CCATGG	1 cut(s)	746
NdeII	GATC	5 cut(s)	101, 196, 597, 691, 721
NlaIII	CATG	6 cut(s)	155, 401, 617, 632, 676, 750
NspI	RCATGY	1 cut(s)	676
PagI	TCATGA	3 cut(s)	151, 613, 628
PciI	ACATGT	1 cut(s)	672
PciSI	GCTCTTC	1 cut(s)	753
PctI	GAATGC	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	74, 632
PscI	ACATGT	1 cut(s)	672
PshBI	ATTAAT	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	724
PspGI	CCWGG	1 cut(s)	724
PspPI	GGNCC	1 cut(s)	457
PstI	CTGCAG	1 cut(s)	554
PstNI	CAGNNNCTG	1 cut(s)	578
PvuII	CAGCTG	1 cut(s)	524
RsaI	GTAC	3 cut(s)	175, 532, 625
RsaNI	GTAC	3 cut(s)	174, 531, 624
RseI	CAYNNNNRTG	1 cut(s)	717
SapI	GCTCTTC	1 cut(s)	753
SaqAI	TTAA	2 cut(s)	225, 237
Sau3AI	GATC	5 cut(s)	101, 196, 597, 691, 721
Sau96I	GGNCC	1 cut(s)	457
ScaI	AGTACT	2 cut(s)	175, 625
ScrFI	CCNGG	1 cut(s)	726
SduI	GDGCHC	1 cut(s)	441
SfaNI	GCATC	2 cut(s)	271, 721
SfcI	CTRYAG	1 cut(s)	550
SmiMI	CAYNNNNRTG	1 cut(s)	717
Sse9I	AATT	5 cut(s)	14, 49, 90, 201, 351
SsiI	CCGC	5 cut(s)	387, 408, 427, 434, 483
SspMI	CTAG	2 cut(s)	171, 543
StyD4I	CCNGG	1 cut(s)	724
StyI	CCWWGG	2 cut(s)	516, 746
TaaI	ACNGT	2 cut(s)	659, 719
TaiI	ACGT	1 cut(s)	281
TaqI	TCGA	1 cut(s)	47
TasI	AATT	5 cut(s)	14, 49, 90, 201, 351
TatI	WGTACW	2 cut(s)	173, 623
TauI	GCSGC	3 cut(s)	389, 410, 429
TfiI	GAWTC	2 cut(s)	74, 632
Tru1I	TTAA	2 cut(s)	225, 237
Tru9I	TTAA	2 cut(s)	225, 237
TscAI	CASTG	1 cut(s)	724
TseI	GCWGC	8 cut(s)	253, 509, 512, 521, 524, 549, 558, 561
TspDTI	ATGAA	3 cut(s)	602, 624, 771
TspRI	CASTG	1 cut(s)	724
VspI	ATTAAT	1 cut(s)	237
XapI	RAATTY	2 cut(s)	49, 351
XceI	RCATGY	1 cut(s)	676
XcmI	CCANNNNNNNNNTGG	1 cut(s)	379
XspI	CTAG	2 cut(s)	171, 543
ZrmI	AGTACT	2 cut(s)	175, 625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.