Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0009412

Physical Location & Seq

Genomic Coordinates Reverse (-)

48170200 .. 48174981

Gene Structure 4782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00254020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2064 bp

ATGAGCTCCCAGTTCCAGCTCCGAGTCAACCCACTCACCGGCAACTCGGAGTGGATCGTCATCGACGAAAACGAACCAGAAGGCCCAACTCCCAACACTTCCCAAAATGCCCTCCTCGCCACAACCTCGTACCTCGACATGCTCAACGACTCTCCCAGGAACAGAGCTTACCGCCAAGCCATAGACAAGACCGTAACTAAACCCTGCCGTGTTCTTGATATTGGCGCCGGAACTGGGTTGCTGTCGATGATGGCTGCGCGGGCAATGGGGTCGACGACATGTCGTATGGTGACGGCTTGTGAGTCTTACCTTCCGATGGTGAAGCTAATGAAGAAGGTTCTGCGCTTGAACGACATGGAAAAGCAGATAAAACTGATCAACAAGCGTTCTGATGAGCTCGAGTTGGGTGTTGATATCAATTCTCGCGCTCAAGTTGTTGTTAGTGAGATACTGGATTCAGAGTTATTGGGAGAAGGGTTGATACCTTCTCTGCAACATGCGCATGACATGTTGTTGGTAGAGAGTCCAGAAACGGTGCCGTTTAGAGCAACCACTTATGGCCAGTTGGTTGAGAGCACATTTTTGTGGAAGCTTCATGATTTACGCGGTAATGAGGCAGAAGCGTGTGATGGGATTCATCTTGTTCCAACCGGGTTTGAGGATGTTTTGGGTGTTAAGCCGCAACAATATGCATTTCATTGCGATGCTATAGCAAATGAAGTGAAACTGCTGTCGGAACCCTTCAAGATCTTTGAATTTGATTTTTCGAAACGGCCAGAGAGTCGTGGAGAAACTGAGCTATCTATAAAGGCGACTAATGATGGTCGAGTTCATGCTGTAATTTCATGGTGGATACTTCAGCTTGATCGAGAAGGGACAATCTTTTATTCCACTGCCCCTAGGTGGATAAATTTGCCAGTCAACATTAGTCATGGGGATTGGTGTGACCATTGGAAACAGTGTGTTTGGTTTGTCCCTGGTGAAGGTATGTCCATAAACAAGGATGAAGAAGTTTGTTTGCATGCTGTTCATACAGATATTAGCATCTCATATAATATCAAGATCCCCGTATCAAGAAACAAGAGTATGCAGTATGACTTAACTGGCAGGGATTTCAAGCTCATACTACCACCAGAAAGAATTGCAATTTATGGAGACAGTGAATGGAGGCATACCATGTTTAATGCAATGAGTAATGCGTTACAGGGAAGAGTTGATCCATTATGCATTGTTGCAGATGACAGTGTCTTCTTAACTCTACTCTTTGCGCATCTTTCTAAAACATCACATTTGATGTCATTTTTTCCGGGGTTGCAAGACAAGGGTTTGCAATATTTTCAAGCTGTCGCCAGTGCCAACAATTTCTCAGTGGATTGTGTAGAATATGTTAAAAAGAAGAAAACTATGTTAACTGTGCACGACACACATCAGAAAAAGGTTGACCTGTTGATTGCAGAACCTTTCTACTATGGAACAGATAGCATGCTTCCATGGCAGAACCTCCGGTTCTGGAATGAGCGGACAATGCTGGATTCTGTCCTATCCGAAGATGCATTGATAATGCCTTGTAAGGCATTATTGAAGGCTTGTGCATTGTCTATCCCTGATCTTTGGAATAGTCGTCGTAGCTTGAGTAAGATTGAAGGGTTTGACCATTCTGTTGTAAACTCCACCTTAGGGGCATGTGGTGAACTACCTGGGGAGCAAGAGGGTCCTTGTCTGCCCTATTTTATTTGGCAGTGTGGAAATGTTAAGAAACTCAGTGAAGCATTTACGGTCATGGAGTTTGATTTCTCAAAACCTATAGTGCCATCTCATGGAAAAACCCAGGTCGAATTTACTGAGCCAGGGATATGCCACGGGTTTGCACTATGGATTGATTGGGTGATGGATTCAGAGAACAACATTGTATTGTCTACAGGGCCAGATAAGAGGTATTGGAAGCAAGGAGTAAAGCTTCTGGGCAAGGCTGTGGGAGTTGGCAAAAGTTGCTCTTCTGCAGTGATTGAAGCTTCGTTTGACCCATCAAGTGGCGACCTGGACGTTAGACATGCTTTCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019918 GO:0019919 GO:0031323 GO:0031326 GO:0032259 GO:0034969 GO:0035241 GO:0035242 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PrmA

Protein Analysis

687

Amino Acids

77.13

Weight (kDa)

5.51

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRMT_C	PF22528	240 - 353	2.3e-13	Arginine methyltransferase oligomerization subdomain
PRMT_C	PF22528	585 - 665	5.5e-07	Arginine methyltransferase oligomerization subdomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16570
fragaria_vesca	FvH4_5g18820 FvH4_5g18820 FvH4_5g18820 FvH4_5g18820 FvH4_5g18820 FvH4_5g18820
malus_domestica	MD04G1063800.v1.1
prunus_persica	Prupe.5G069000_v2.0.a1 Prupe.5G069000_v2.0.a1
pyrus_communis	pycom04g05760
rosa_chinensis	RchiOBHm_Chr7g0203171
rosa_laevigata	RLG00000003546
rosa_multiflora	Rmu_sc0005566.1_g000011 Rmu_sc0014667.1_g000003
rosa_roxburghii	Rroxscaffold_3G00254020
rosa_rugosa	Rorug07G0074800
rosa_samantha	Rh7AG204000 Rh7BG203300 Rh7CG214900 Rh7DG210700
rosa_wichuraiana	Rw7G017780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	501, 1269
AccB1I	GGYRCC	2 cut(s)	224, 535
AccB7I	CCANNNNNTGG	2 cut(s)	1817, 2030
AccBSI	CCGCTC	1 cut(s)	1519
AccI	GTMKAC	2 cut(s)	272, 1916
AccII	CGCG	3 cut(s)	259, 426, 606
AciI	CCGC	5 cut(s)	172, 259, 606, 680, 1519
AclWI	GGATC	3 cut(s)	62, 1057, 1211
AcoI	YGGCCR	2 cut(s)	559, 773
AcsI	RAATTY	3 cut(s)	755, 910, 1835
AcuI	CTGAAG	1 cut(s)	842
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	8 cut(s)	38, 234, 316, 903, 983, 1677, 1817, 2030
AflIII	ACRYGT	2 cut(s)	278, 507
AgsI	TTSAA	8 cut(s)	349, 745, 755, 1117, 1340, 1582, 1643, 2009
AhdI	GACNNNNNGTC	1 cut(s)	279
AjnI	CCWGG	6 cut(s)	155, 976, 1696, 1827, 1846, 2037
Alw21I	GWGCWC	4 cut(s)	8, 399, 578, 1419
Alw26I	GTCTC	1 cut(s)	1149
Alw44I	GTGCAC	1 cut(s)	1415
AlwI	GGATC	3 cut(s)	62, 1057, 1211
Ama87I	CYCGRG	1 cut(s)	398
AoxI	GGCC	4 cut(s)	82, 559, 773, 1922
ApaLI	GTGCAC	1 cut(s)	1415
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	3 cut(s)	755, 910, 1835
AspA2I	CCTAGG	1 cut(s)	899
AspLEI	GCGC	6 cut(s)	227, 259, 345, 428, 502, 1270
AspS9I	GGNCC	3 cut(s)	83, 1712, 1922
AsuC2I	CCSGG	2 cut(s)	652, 1308
AsuHPI	GGTGA	6 cut(s)	28, 301, 331, 992, 1700, 1897
AsuII	TTCGAA	1 cut(s)	767
AvaI	CYCGRG	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	1712
AvrII	CCTAGG	1 cut(s)	899
AxyI	CCTNAGG	1 cut(s)	1675
BaeGI	GKGCMC	1 cut(s)	1419
BalI	TGGCCA	1 cut(s)	561
BanI	GGYRCC	2 cut(s)	224, 535
BanII	GRGCYC	2 cut(s)	8, 399
BarI	GAAGNNNNNNTAC	2 cut(s)	465, 497
BbsI	GAAGAC	1 cut(s)	1240
Bbv12I	GWGCWC	4 cut(s)	8, 399, 578, 1419
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	7 cut(s)	244, 310, 623, 815, 1819, 1882, 2032
BceAI	ACGGC	4 cut(s)	192, 309, 523, 788
BcgI	CGANNNNNNTGC	2 cut(s)	252, 286
BciT130I	CCWGG	6 cut(s)	157, 978, 1698, 1829, 1848, 2039
BciVI	GTATCC	1 cut(s)	846
BclI	TGATCA	1 cut(s)	375
BcnI	CCSGG	2 cut(s)	652, 1308
BcoDI	GTCTC	1 cut(s)	1149
BfaI	CTAG	1 cut(s)	900
BfmI	CTRYAG	4 cut(s)	708, 1803, 1917, 1998
BfoI	RGCGCY	1 cut(s)	228
BfuI	GTATCC	1 cut(s)	846
BglII	AGATCT	1 cut(s)	747
BisI	GCNGC	2 cut(s)	255, 680
BlnI	CCTAGG	1 cut(s)	899
BlsI	GCNGC	2 cut(s)	256, 681
Bme1390I	CCNGG	8 cut(s)	157, 652, 978, 1308, 1698, 1829, 1848, 2039
Bme18I	GGWCC	1 cut(s)	1712
BmeRI	GACNNNNNGTC	1 cut(s)	279
BmeT110I	CYCGRG	1 cut(s)	398
BmgT120I	GGNCC	3 cut(s)	83, 1712, 1922
BmiI	GGNNCC	4 cut(s)	226, 537, 738, 1713
BmrFI	CCNGG	8 cut(s)	157, 652, 978, 1308, 1698, 1829, 1848, 2039
BmrI	ACTGGG	2 cut(s)	4, 243
BmsI	GCATC	4 cut(s)	694, 1053, 1279, 1540
BmuI	ACTGGG	2 cut(s)	4, 243
BpiI	GAAGAC	1 cut(s)	1240
Bpu14I	TTCGAA	1 cut(s)	767
BpuEI	CTTGAG	2 cut(s)	414, 1651
BpuMI	CCSGG	2 cut(s)	652, 1308
BsaBI	GATNNNNATC	1 cut(s)	59
BsaHI	GRCGYC	1 cut(s)	225
BsaJI	CCNNGG	9 cut(s)	155, 899, 976, 1307, 1490, 1697, 1827, 1847, 1858
BsaWI	WCCGGW	1 cut(s)	1503
Bsc4I	CCNNNNNNNGG	8 cut(s)	38, 234, 316, 903, 983, 1677, 1817, 2030
Bse118I	RCCGGY	1 cut(s)	38
Bse1I	ACTGG	7 cut(s)	10, 238, 456, 562, 917, 1108, 1350
Bse21I	CCTNAGG	1 cut(s)	1675
Bse3DI	GCAATG	3 cut(s)	270, 697, 1194
Bse8I	GATNNNNATC	1 cut(s)	59
BseBI	CCWGG	6 cut(s)	157, 978, 1698, 1829, 1848, 2039
BseDI	CCNNGG	9 cut(s)	155, 899, 976, 1307, 1490, 1697, 1827, 1847, 1858
BseGI	GGATG	2 cut(s)	667, 1009
BseJI	GATNNNNATC	1 cut(s)	59
BseLI	CCNNNNNNNGG	8 cut(s)	38, 234, 316, 903, 983, 1677, 1817, 2030
BseMI	GCAATG	3 cut(s)	270, 697, 1194
BseMII	CTCAG	4 cut(s)	786, 1380, 1774, 1833
BseNI	ACTGG	7 cut(s)	10, 238, 456, 562, 917, 1108, 1350
BseRI	GAGGAG	1 cut(s)	104
BseSI	GKGCMC	1 cut(s)	1419
BseXI	GCAGC	1 cut(s)	241
Bsh1236I	CGCG	3 cut(s)	259, 426, 606
BshFI	GGCC	4 cut(s)	84, 561, 775, 1924
BshNI	GGYRCC	2 cut(s)	224, 535
BsiHKAI	GWGCWC	4 cut(s)	8, 399, 578, 1419
BsiHKCI	CYCGRG	1 cut(s)	398
BsiSI	CCGG	5 cut(s)	39, 228, 651, 1307, 1504
BslFI	GGGAC	2 cut(s)	889, 959
BslI	CCNNNNNNNGG	8 cut(s)	38, 234, 316, 903, 983, 1677, 1817, 2030
BsmAI	GTCTC	1 cut(s)	1149
BsmFI	GGGAC	2 cut(s)	889, 959
BsnI	GGCC	4 cut(s)	84, 561, 775, 1924
BsoBI	CYCGRG	1 cut(s)	398
Bsp119I	TTCGAA	1 cut(s)	767
Bsp1286I	GDGCHC	4 cut(s)	8, 399, 578, 1419
Bsp143I	GATC	7 cut(s)	54, 375, 747, 865, 1062, 1216, 1606
Bsp19I	CCATGG	1 cut(s)	1490
BspACI	CCGC	5 cut(s)	172, 259, 606, 680, 1519
BspANI	GGCC	4 cut(s)	84, 561, 775, 1924
BspCNI	CTCAG	4 cut(s)	787, 1379, 1773, 1834
BspFNI	CGCG	3 cut(s)	259, 426, 606
BspHI	TCATGA	1 cut(s)	595
BspLI	GGNNCC	4 cut(s)	226, 537, 738, 1713
BspMAI	CTGCAG	1 cut(s)	2002
BspPI	GGATC	3 cut(s)	62, 1057, 1211
BspQI	GCTCTTC	1 cut(s)	1999
BspT104I	TTCGAA	1 cut(s)	767
BspT107I	GGYRCC	2 cut(s)	224, 535
BsrBI	CCGCTC	1 cut(s)	1519
BsrDI	GCAATG	3 cut(s)	270, 697, 1194
BsrFI	RCCGGY	1 cut(s)	38
BsrI	ACTGG	7 cut(s)	10, 238, 456, 562, 917, 1108, 1350
BssAI	RCCGGY	1 cut(s)	38
BssECI	CCNNGG	9 cut(s)	155, 899, 976, 1307, 1490, 1697, 1827, 1847, 1858
BssMI	GATC	7 cut(s)	54, 375, 747, 865, 1062, 1216, 1606
BssNI	GRCGYC	1 cut(s)	225
BssT1I	CCWWGG	2 cut(s)	899, 1490
Bst2UI	CCWGG	6 cut(s)	157, 978, 1698, 1829, 1848, 2039
Bst4CI	ACNGT	7 cut(s)	193, 535, 960, 1160, 1244, 1414, 1777
Bst6I	CTCTTC	2 cut(s)	1204, 1999
BstACI	GRCGYC	1 cut(s)	225
BstAPI	GCANNNNNTGC	1 cut(s)	1989
BstBI	TTCGAA	1 cut(s)	767
BstC8I	GCNNGC	3 cut(s)	261, 1023, 1484
BstDEI	CTNAG	5 cut(s)	795, 1366, 1675, 1760, 1842
BstDSI	CCRYGG	2 cut(s)	1490, 1858
BstENI	CCTNNNNNAGG	1 cut(s)	981
BstF5I	GGATG	2 cut(s)	667, 1009
BstFNI	CGCG	3 cut(s)	259, 426, 606
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	6 cut(s)	227, 259, 345, 428, 502, 1270
BstKTI	GATC	7 cut(s)	57, 378, 750, 868, 1065, 1219, 1609
BstMAI	GTCTC	1 cut(s)	1149
BstMBI	GATC	7 cut(s)	54, 375, 747, 865, 1062, 1216, 1606
BstMWI	GCNNNNNNNGC	6 cut(s)	116, 260, 499, 1492, 1525, 1989
BstNI	CCWGG	6 cut(s)	157, 978, 1698, 1829, 1848, 2039
BstNSI	RCATGY	8 cut(s)	142, 282, 500, 511, 1025, 1486, 1686, 2054
BstSCI	CCNGG	8 cut(s)	155, 650, 976, 1306, 1696, 1827, 1846, 2037
BstSFI	CTRYAG	4 cut(s)	708, 1803, 1917, 1998
BstSLI	GKGCMC	1 cut(s)	1419
BstUI	CGCG	3 cut(s)	259, 426, 606
BstV1I	GCAGC	1 cut(s)	241
BstV2I	GAAGAC	1 cut(s)	1240
BstX2I	RGATCY	2 cut(s)	747, 1062
BstYI	RGATCY	2 cut(s)	747, 1062
Bsu36I	CCTNAGG	1 cut(s)	1675
BsuI	GTATCC	1 cut(s)	846
BsuRI	GGCC	4 cut(s)	84, 561, 775, 1924
BtgI	CCRYGG	2 cut(s)	1490, 1858
BtgZI	GCGATG	1 cut(s)	717
BtsCI	GGATG	2 cut(s)	667, 1009
BtsI	GCAGTG	3 cut(s)	891, 1745, 2007
BtsIMutI	CAGTG	9 cut(s)	891, 965, 1165, 1249, 1357, 1374, 1745, 1768, 2007
Cac8I	GCNNGC	3 cut(s)	261, 1023, 1484
CciI	TCATGA	1 cut(s)	595
CfoI	GCGC	6 cut(s)	227, 259, 345, 428, 502, 1270
Cfr10I	RCCGGY	1 cut(s)	38
Cfr13I	GGNCC	3 cut(s)	83, 1712, 1922
Csp6I	GTAC	1 cut(s)	130
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	5 cut(s)	795, 1366, 1675, 1760, 1842
DinI	GGCGCC	1 cut(s)	226
DpnI	GATC	7 cut(s)	56, 377, 749, 867, 1064, 1218, 1608
DpnII	GATC	7 cut(s)	54, 375, 747, 865, 1062, 1216, 1606
DriI	GACNNNNNGTC	1 cut(s)	279
EaeI	YGGCCR	2 cut(s)	559, 773
Eam1104I	CTCTTC	2 cut(s)	1204, 1999
Eam1105I	GACNNNNNGTC	1 cut(s)	279
EarI	CTCTTC	2 cut(s)	1204, 1999
Ecl136II	GAGCTC	2 cut(s)	6, 397
Eco130I	CCWWGG	2 cut(s)	899, 1490
Eco24I	GRGCYC	2 cut(s)	8, 399
Eco32I	GATATC	1 cut(s)	415
Eco47I	GGWCC	1 cut(s)	1712
Eco53kI	GAGCTC	2 cut(s)	6, 397
Eco57I	CTGAAG	1 cut(s)	842
Eco81I	CCTNAGG	1 cut(s)	1675
Eco88I	CYCGRG	1 cut(s)	398
EcoICRI	GAGCTC	2 cut(s)	6, 397
EcoNI	CCTNNNNNAGG	1 cut(s)	981
EcoO109I	RGGNCCY	1 cut(s)	1712
EcoRII	CCWGG	6 cut(s)	155, 976, 1696, 1827, 1846, 2037
EcoRV	GATATC	1 cut(s)	415
EcoT14I	CCWWGG	2 cut(s)	899, 1490
EcoT22I	ATGCAT	3 cut(s)	694, 1229, 1555
EcoT38I	GRGCYC	2 cut(s)	8, 399
EgeI	GGCGCC	1 cut(s)	226
EheI	GGCGCC	1 cut(s)	226
ErhI	CCWWGG	2 cut(s)	899, 1490
FalI	AAGNNNNNCTT	2 cut(s)	1978, 2010
FaqI	GGGAC	2 cut(s)	889, 959
FauI	CCCGC	1 cut(s)	252
FbaI	TGATCA	1 cut(s)	375
FblI	GTMKAC	2 cut(s)	272, 1916
Fnu4HI	GCNGC	2 cut(s)	255, 680
FokI	GGATG	2 cut(s)	674, 1016
FriOI	GRGCYC	2 cut(s)	8, 399
Fsp4HI	GCNGC	2 cut(s)	255, 680
FspAI	RTGCGCAY	1 cut(s)	501
FspBI	CTAG	1 cut(s)	900
FspI	TGCGCA	2 cut(s)	501, 1269
GlaI	GCGC	6 cut(s)	226, 258, 344, 427, 501, 1269
GluI	GCNGC	2 cut(s)	255, 680
HaeII	RGCGCY	1 cut(s)	228
HaeIII	GGCC	4 cut(s)	84, 561, 775, 1924
HapII	CCGG	5 cut(s)	39, 228, 651, 1307, 1504
HhaI	GCGC	6 cut(s)	227, 259, 345, 428, 502, 1270
Hin1I	GRCGYC	1 cut(s)	225
Hin6I	GCGC	6 cut(s)	225, 257, 343, 426, 500, 1268
HinP1I	GCGC	6 cut(s)	225, 257, 343, 426, 500, 1268
HincII	GTYRAC	5 cut(s)	28, 273, 922, 1410, 1441
HindII	GTYRAC	5 cut(s)	28, 273, 922, 1410, 1441
HindIII	AAGCTT	3 cut(s)	590, 1955, 2010
HinfI	GANTC	9 cut(s)	24, 149, 302, 455, 523, 634, 781, 1532, 1892
HpaI	GTTAAC	1 cut(s)	1410
HpaII	CCGG	5 cut(s)	39, 228, 651, 1307, 1504
HphI	GGTGA	6 cut(s)	28, 301, 331, 992, 1700, 1897
Hpy166II	GTNNAC	9 cut(s)	28, 273, 922, 1410, 1417, 1441, 1666, 1691, 1917
Hpy188I	TCNGA	9 cut(s)	23, 49, 315, 391, 460, 736, 1431, 1546, 1897
Hpy188III	TCNNGA	8 cut(s)	215, 527, 596, 745, 869, 1060, 1074, 1510
Hpy8I	GTNNAC	9 cut(s)	28, 273, 922, 1410, 1417, 1441, 1666, 1691, 1917
Hpy99I	CGWCG	3 cut(s)	68, 277, 1626
HpyCH4III	ACNGT	7 cut(s)	193, 535, 960, 1160, 1244, 1414, 1777
HpyCH4IV	ACGT	1 cut(s)	2043
HpyF10VI	GCNNNNNNNGC	6 cut(s)	116, 260, 499, 1492, 1525, 1989
HpyF3I	CTNAG	5 cut(s)	795, 1366, 1675, 1760, 1842
HpySE526I	ACGT	1 cut(s)	2043
Hsp92I	GRCGYC	1 cut(s)	225
HspAI	GCGC	6 cut(s)	225, 257, 343, 426, 500, 1268
KasI	GGCGCC	1 cut(s)	224
Ksp22I	TGATCA	1 cut(s)	375
KspAI	GTTAAC	1 cut(s)	1410
Kzo9I	GATC	7 cut(s)	54, 375, 747, 865, 1062, 1216, 1606
LguI	GCTCTTC	1 cut(s)	1999
LmnI	GCTCC	3 cut(s)	11, 24, 1702
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	4 cut(s)	694, 1053, 1279, 1540
MaeI	CTAG	1 cut(s)	900
MaeII	ACGT	1 cut(s)	2043
MaeIII	GTNAC	4 cut(s)	193, 289, 944, 1200
MalI	GATC	7 cut(s)	56, 377, 749, 867, 1064, 1218, 1608
MbiI	CCGCTC	1 cut(s)	1519
MboI	GATC	7 cut(s)	54, 375, 747, 865, 1062, 1216, 1606
MboII	GAAGA	7 cut(s)	343, 1019, 1221, 1240, 1408, 1559, 1986
MflI	RGATCY	2 cut(s)	747, 1062
MhlI	GDGCHC	4 cut(s)	8, 399, 578, 1419
MlsI	TGGCCA	1 cut(s)	561
MluCI	AATT	8 cut(s)	418, 755, 840, 910, 1140, 1146, 1360, 1835
MluNI	TGGCCA	1 cut(s)	561
Mly113I	GGCGCC	1 cut(s)	225
MlyI	GAGTC	5 cut(s)	33, 143, 311, 532, 790
MmeI	TCCRAC	2 cut(s)	671, 714
Mox20I	TGGCCA	1 cut(s)	561
Mph1103I	ATGCAT	3 cut(s)	694, 1229, 1555
MscI	TGGCCA	1 cut(s)	561
MseI	TTAA	7 cut(s)	675, 1100, 1182, 1253, 1389, 1409, 1752
MslI	CAYNNNNRTG	3 cut(s)	501, 583, 702
Msp20I	TGGCCA	1 cut(s)	561
MspI	CCGG	5 cut(s)	39, 228, 651, 1307, 1504
MspR9I	CCNGG	8 cut(s)	157, 652, 978, 1308, 1698, 1829, 1848, 2039
MvaI	CCWGG	6 cut(s)	157, 978, 1698, 1829, 1848, 2039
MvnI	CGCG	3 cut(s)	259, 426, 606
MwoI	GCNNNNNNNGC	6 cut(s)	116, 260, 499, 1492, 1525, 1989
NarI	GGCGCC	1 cut(s)	225
NciI	CCSGG	2 cut(s)	652, 1308
NcoI	CCATGG	1 cut(s)	1490
NdeII	GATC	7 cut(s)	54, 375, 747, 865, 1062, 1216, 1606
NlaIV	GGNNCC	4 cut(s)	226, 537, 738, 1713
NmuCI	GTSAC	2 cut(s)	289, 944
NsbI	TGCGCA	2 cut(s)	501, 1269
NsiI	ATGCAT	3 cut(s)	694, 1229, 1555
NspI	RCATGY	8 cut(s)	142, 282, 500, 511, 1025, 1486, 1686, 2054
NspV	TTCGAA	1 cut(s)	767
PaeI	GCATGC	2 cut(s)	1025, 1486
PaeR7I	CTCGAG	1 cut(s)	398
PagI	TCATGA	1 cut(s)	595
PciI	ACATGT	2 cut(s)	278, 507
PciSI	GCTCTTC	1 cut(s)	1999
PcsI	WCGNNNNNNNCGW	2 cut(s)	63, 69
PfeI	GAWTC	4 cut(s)	455, 634, 1532, 1892
PflFI	GACNNNGTC	1 cut(s)	1244
PflMI	CCANNNNNTGG	2 cut(s)	1817, 2030
PkrI	GCNGC	2 cut(s)	256, 681
PleI	GAGTC	5 cut(s)	32, 143, 310, 531, 789
PluTI	GGCGCC	1 cut(s)	228
PpsI	GAGTC	5 cut(s)	32, 143, 310, 531, 789
PpuMI	RGGWCCY	1 cut(s)	1712
PscI	ACATGT	2 cut(s)	278, 507
Psp124BI	GAGCTC	2 cut(s)	8, 399
Psp5II	RGGWCCY	1 cut(s)	1712
Psp6I	CCWGG	6 cut(s)	155, 976, 1696, 1827, 1846, 2037
PspGI	CCWGG	6 cut(s)	155, 976, 1696, 1827, 1846, 2037
PspN4I	GGNNCC	4 cut(s)	226, 537, 738, 1713
PspPI	GGNCC	3 cut(s)	83, 1712, 1922
PspPPI	RGGWCCY	1 cut(s)	1712
PspXI	VCTCGAGB	1 cut(s)	398
PsrI	GAACNNNNNNTAC	2 cut(s)	152, 184
PstI	CTGCAG	1 cut(s)	2002
PsuI	RGATCY	2 cut(s)	747, 1062
PsyI	GACNNNGTC	1 cut(s)	1244
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
RseI	CAYNNNNRTG	3 cut(s)	501, 583, 702
SacI	GAGCTC	2 cut(s)	8, 399
SalI	GTCGAC	1 cut(s)	271
SapI	GCTCTTC	1 cut(s)	1999
SaqAI	TTAA	7 cut(s)	675, 1100, 1182, 1253, 1389, 1409, 1752
SatI	GCNGC	2 cut(s)	255, 680
Sau3AI	GATC	7 cut(s)	54, 375, 747, 865, 1062, 1216, 1606
Sau96I	GGNCC	3 cut(s)	83, 1712, 1922
SchI	GAGTC	5 cut(s)	33, 143, 311, 532, 790
ScrFI	CCNGG	8 cut(s)	157, 652, 978, 1308, 1698, 1829, 1848, 2039
SduI	GDGCHC	4 cut(s)	8, 399, 578, 1419
SfaNI	GCATC	4 cut(s)	694, 1053, 1279, 1540
SfcI	CTRYAG	4 cut(s)	708, 1803, 1917, 1998
SfoI	GGCGCC	1 cut(s)	226
Sfr274I	CTCGAG	1 cut(s)	398
SfuI	TTCGAA	1 cut(s)	767
SinI	GGWCC	1 cut(s)	1712
SlaI	CTCGAG	1 cut(s)	398
SmiMI	CAYNNNNRTG	3 cut(s)	501, 583, 702
SmlI	CTYRAG	3 cut(s)	398, 429, 1630
SmoI	CTYRAG	3 cut(s)	398, 429, 1630
SphI	GCATGC	2 cut(s)	1025, 1486
Sse9I	AATT	8 cut(s)	418, 755, 840, 910, 1140, 1146, 1360, 1835
SsiI	CCGC	5 cut(s)	172, 259, 606, 680, 1519
SspDI	GGCGCC	1 cut(s)	224
SspI	AATATT	1 cut(s)	1334
SspMI	CTAG	1 cut(s)	900
SstI	GAGCTC	2 cut(s)	8, 399
StyD4I	CCNGG	8 cut(s)	155, 650, 976, 1306, 1696, 1827, 1846, 2037
StyI	CCWWGG	2 cut(s)	899, 1490
TaaI	ACNGT	7 cut(s)	193, 535, 960, 1160, 1244, 1414, 1777
TaiI	ACGT	1 cut(s)	2046
TaqI	TCGA	9 cut(s)	63, 135, 245, 272, 399, 767, 826, 868, 1833
TasI	AATT	8 cut(s)	418, 755, 840, 910, 1140, 1146, 1360, 1835
TauI	GCSGC	1 cut(s)	682
TfiI	GAWTC	4 cut(s)	455, 634, 1532, 1892
Tru1I	TTAA	7 cut(s)	675, 1100, 1182, 1253, 1389, 1409, 1752
Tru9I	TTAA	7 cut(s)	675, 1100, 1182, 1253, 1389, 1409, 1752
TscAI	CASTG	9 cut(s)	898, 965, 1165, 1249, 1357, 1374, 1745, 1768, 2007
TseFI	GTSAC	2 cut(s)	289, 944
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	2 cut(s)	289, 944
TspDTI	ATGAA	9 cut(s)	344, 584, 626, 686, 732, 821, 834, 1019, 1020
TspRI	CASTG	9 cut(s)	898, 965, 1165, 1249, 1357, 1374, 1745, 1768, 2007
Tth111I	GACNNNGTC	1 cut(s)	1244
Van91I	CCANNNNNTGG	2 cut(s)	1817, 2030
VneI	GTGCAC	1 cut(s)	1415
VpaK11BI	GGWCC	1 cut(s)	1712
XagI	CCTNNNNNAGG	1 cut(s)	981
XapI	RAATTY	3 cut(s)	755, 910, 1835
XceI	RCATGY	8 cut(s)	142, 282, 500, 511, 1025, 1486, 1686, 2054
XhoI	CTCGAG	1 cut(s)	398
XmaJI	CCTAGG	1 cut(s)	899
XmiI	GTMKAC	2 cut(s)	272, 1916
XspI	CTAG	1 cut(s)	900
Zsp2I	ATGCAT	3 cut(s)	694, 1229, 1555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.