pycom04g09300

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0015654
Physical Location & Seq
Reverse (-)
11812987 .. 11813678
692 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 582 bp
ATGACAAATGTAACTTTTAGAAAGTCCAAGCTTGCTTCTTCATCAATGGCGTCGAGGAAGTCGTCCTTTTATGGAAAACTCAATTCCATTTTTCCAGCCTCGTCGATGGATGACAGCCCAGTTGGCCCAGATGGGCTGTTCGAATTTGACGAGGCGGATATCTGCAACTCATCATCCAGCACAGTTACTGAGTCCAAGAAGAGCACAATTCTCAGCCACGGTGAGCCGAAGAAAATGGGGAGGAAGATGATGGTGATGAACATGAGCATGGCGGAGAAGGGCGCCGCCGACAAGGTGATGTCATCGTCGCTGCCGGTGAACATTCCGGACTGGTCCAAGATTCTCAAAGACGGGTACAAAGAGCAGAGGAAGCTGGACAGTGATGAAAACTGCTGTGGAGAATTCTACAGTGACGATGAGGAGGACGACGGCGGAGATGGGAGGGTTCCGCCTCATGAGTACTTGGCGAGGACGAGAGGGGCTTCGTTTTCTGTCCATGAAGGGATTGGGAGGACTCTGAAAGGCAGGGACTTGAGGCGGGTGCGAAATGCAATTTGGAAAAAAGTTGGGTTCGAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

194

Amino Acids

21.37

Weight (kDa)

6.84

Isoelectric Point (pI)

48.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 54 - 193 1.7e-36 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015654)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15900
malus_domestica MD04G1097800.v1.1 MD12G1118800.v1.1
prunus_persica Prupe.6G236700_v2.0.a1
pyrus_communis pycom04g09300 pycom12g11740
rosa_chinensis RchiOBHm_Chr3g0469591
rosa_laevigata RLG00000024334
rosa_multiflora Rmu_sc0006483.1_g000007
rosa_roxburghii Rroxscaffold_6G00411740
rosa_rugosa Rorug03G0102800
rosa_samantha Rh3AG152100 Rh3BG175800 Rh3CG166800 Rh3DG199700
rosa_wichuraiana Rw3G014340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 281
AccIII TCCGGA 1 cut(s) 325
AciI CCGC 6 cut(s) 155, 272, 285, 432, 449, 538
AcsI RAATTY 2 cut(s) 143, 401
AcyI GRCGYC 2 cut(s) 50, 282
AfaI GTAC 2 cut(s) 356, 461
AjuI GAANNNNNNNTTGG 2 cut(s) 538, 570
AluBI AGCT 2 cut(s) 31, 373
AluI AGCT 2 cut(s) 31, 373
Alw21I GWGCWC 1 cut(s) 206
AlwNI CAGNNNCTG 1 cut(s) 188
Aor13HI TCCGGA 1 cut(s) 325
AoxI GGCC 1 cut(s) 124
ApeKI GCWGC 1 cut(s) 310
ApoI RAATTY 2 cut(s) 143, 401
AspLEI GCGC 1 cut(s) 284
AspS9I GGNCC 2 cut(s) 125, 333
AsuHPI GGTGA 4 cut(s) 233, 265, 307, 328
AsuII TTCGAA 2 cut(s) 141, 573
AvaII GGWCC 1 cut(s) 333
BanI GGYRCC 1 cut(s) 281
Bbv12I GWGCWC 1 cut(s) 206
BbvI GCAGC 1 cut(s) 297
BccI CCATC 4 cut(s) 100, 125, 244, 431
BceAI ACGGC 1 cut(s) 445
BfmI CTRYAG 1 cut(s) 406
BfoI RGCGCY 1 cut(s) 285
BglI GCCNNNNNGGC 1 cut(s) 123
BisI GCNGC 2 cut(s) 285, 311
BlsI GCNGC 2 cut(s) 286, 312
BmcAI AGTACT 1 cut(s) 461
Bme18I GGWCC 1 cut(s) 333
BmgT120I GGNCC 2 cut(s) 125, 333
BmiI GGNNCC 2 cut(s) 283, 447
BmrI ACTGGG 1 cut(s) 113
BmuI ACTGGG 1 cut(s) 113
Bpu14I TTCGAA 2 cut(s) 141, 573
BpuEI CTTGAG 1 cut(s) 553
BsaHI GRCGYC 2 cut(s) 50, 282
BsaJI CCNNGG 1 cut(s) 217
BsaWI WCCGGW 1 cut(s) 325
Bse118I RCCGGY 1 cut(s) 313
Bse1I ACTGG 2 cut(s) 119, 335
BseAI TCCGGA 1 cut(s) 325
BseDI CCNNGG 1 cut(s) 217
BseGI GGATG 2 cut(s) 115, 173
BseMII CTCAG 2 cut(s) 180, 226
BseNI ACTGG 2 cut(s) 119, 335
BseRI GAGGAG 1 cut(s) 434
BseXI GCAGC 1 cut(s) 297
BshFI GGCC 1 cut(s) 126
BshNI GGYRCC 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 206
BsiSI CCGG 2 cut(s) 314, 326
BslFI GGGAC 1 cut(s) 542
BsmFI GGGAC 1 cut(s) 542
BsnI GGCC 1 cut(s) 126
Bsp119I TTCGAA 2 cut(s) 141, 573
Bsp1286I GDGCHC 1 cut(s) 206
Bsp13I TCCGGA 1 cut(s) 325
BspACI CCGC 6 cut(s) 155, 272, 285, 432, 449, 538
BspANI GGCC 1 cut(s) 126
BspCNI CTCAG 2 cut(s) 181, 225
BspEI TCCGGA 1 cut(s) 325
BspHI TCATGA 1 cut(s) 454
BspLI GGNNCC 2 cut(s) 283, 447
BspQI GCTCTTC 1 cut(s) 194
BspT104I TTCGAA 2 cut(s) 141, 573
BspT107I GGYRCC 1 cut(s) 281
BsrFI RCCGGY 1 cut(s) 313
BsrI ACTGG 2 cut(s) 119, 335
BssAI RCCGGY 1 cut(s) 313
BssECI CCNNGG 1 cut(s) 217
BssNI GRCGYC 2 cut(s) 50, 282
Bst4CI ACNGT 4 cut(s) 184, 221, 380, 410
Bst6I CTCTTC 1 cut(s) 194
BstACI GRCGYC 2 cut(s) 50, 282
BstBI TTCGAA 2 cut(s) 141, 573
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 2 cut(s) 189, 212
BstDSI CCRYGG 1 cut(s) 217
BstF5I GGATG 2 cut(s) 115, 173
BstH2I RGCGCY 1 cut(s) 285
BstHHI GCGC 1 cut(s) 284
BstMWI GCNNNNNNNGC 2 cut(s) 123, 370
BstSFI CTRYAG 1 cut(s) 406
BstV1I GCAGC 1 cut(s) 297
BsuRI GGCC 1 cut(s) 126
BtgI CCRYGG 1 cut(s) 217
BtsCI GGATG 2 cut(s) 115, 173
BtsIMutI CAGTG 2 cut(s) 385, 415
Cac8I GCNNGC 1 cut(s) 33
CaiI CAGNNNCTG 1 cut(s) 188
CciI TCATGA 1 cut(s) 454
CfoI GCGC 1 cut(s) 284
Cfr10I RCCGGY 1 cut(s) 313
Cfr13I GGNCC 2 cut(s) 125, 333
CseI GACGC 1 cut(s) 39
Csp6I GTAC 2 cut(s) 355, 460
CviAII CATG 4 cut(s) 262, 268, 455, 497
CviJI RGCY 9 cut(s) 31, 98, 117, 126, 136, 216, 226, 373, 482
CviKI_1 RGCY 9 cut(s) 31, 98, 117, 126, 136, 216, 226, 373, 482
CviQI GTAC 2 cut(s) 355, 460
DdeI CTNAG 2 cut(s) 189, 212
DinI GGCGCC 1 cut(s) 283
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
EciI GGCGGA 4 cut(s) 170, 287, 438, 447
Eco32I GATATC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 333
EcoRI GAATTC 1 cut(s) 401
EcoRV GATATC 1 cut(s) 160
EgeI GGCGCC 1 cut(s) 283
EheI GGCGCC 1 cut(s) 283
FaeI CATG 4 cut(s) 265, 271, 458, 500
FaiI YATR 5 cut(s) 72, 263, 269, 456, 498
FalI AAGNNNNNCTT 2 cut(s) 50, 82
FaqI GGGAC 1 cut(s) 542
FatI CATG 4 cut(s) 261, 267, 454, 496
FauI CCCGC 1 cut(s) 531
Fnu4HI GCNGC 2 cut(s) 285, 311
FokI GGATG 2 cut(s) 122, 160
Fsp4HI GCNGC 2 cut(s) 285, 311
GlaI GCGC 1 cut(s) 283
GluI GCNGC 2 cut(s) 285, 311
HaeII RGCGCY 1 cut(s) 285
HaeIII GGCC 1 cut(s) 126
HapII CCGG 2 cut(s) 314, 326
HgaI GACGC 1 cut(s) 39
HhaI GCGC 1 cut(s) 284
Hin1I GRCGYC 2 cut(s) 50, 282
Hin1II CATG 4 cut(s) 265, 271, 458, 500
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 3 cut(s) 191, 340, 514
HpaII CCGG 2 cut(s) 314, 326
HphI GGTGA 4 cut(s) 233, 265, 307, 328
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 1 cut(s) 519
Hpy188III TCNNGA 2 cut(s) 326, 455
Hpy8I GTNNAC 1 cut(s) 319
Hpy99I CGWCG 4 cut(s) 55, 106, 310, 431
HpyAV CCTTC 2 cut(s) 271, 494
HpyCH4III ACNGT 4 cut(s) 184, 221, 380, 410
HpyCH4V TGCA 2 cut(s) 165, 551
HpyF10VI GCNNNNNNNGC 2 cut(s) 123, 370
HpyF3I CTNAG 2 cut(s) 189, 212
Hsp92I GRCGYC 2 cut(s) 50, 282
Hsp92II CATG 4 cut(s) 265, 271, 458, 500
HspAI GCGC 1 cut(s) 282
KasI GGCGCC 1 cut(s) 281
Kpn2I TCCGGA 1 cut(s) 325
LguI GCTCTTC 1 cut(s) 194
LpnPI CCDG 9 cut(s) 108, 132, 141, 190, 316, 327, 339, 359, 511
Lsp1109I GCAGC 1 cut(s) 297
MaeIII GTNAC 3 cut(s) 10, 184, 410
MboII GAAGA 4 cut(s) 30, 211, 241, 256
MhlI GDGCHC 1 cut(s) 206
MluCI AATT 5 cut(s) 82, 143, 207, 401, 552
Mly113I GGCGCC 1 cut(s) 282
MlyI GAGTC 2 cut(s) 200, 508
MroI TCCGGA 1 cut(s) 325
MslI CAYNNNNRTG 1 cut(s) 266
MspI CCGG 2 cut(s) 314, 326
MwoI GCNNNNNNNGC 2 cut(s) 123, 370
NarI GGCGCC 1 cut(s) 282
NlaIII CATG 4 cut(s) 265, 271, 458, 500
NlaIV GGNNCC 2 cut(s) 283, 447
NmuCI GTSAC 1 cut(s) 410
NspV TTCGAA 2 cut(s) 141, 573
PagI TCATGA 1 cut(s) 454
PciSI GCTCTTC 1 cut(s) 194
PcsI WCGNNNNNNNCGW 2 cut(s) 59, 147
PfeI GAWTC 1 cut(s) 340
PkrI GCNGC 2 cut(s) 286, 312
PleI GAGTC 2 cut(s) 199, 508
PluTI GGCGCC 1 cut(s) 285
PpsI GAGTC 2 cut(s) 199, 508
PspN4I GGNNCC 2 cut(s) 283, 447
PspPI GGNCC 2 cut(s) 125, 333
PstNI CAGNNNCTG 1 cut(s) 188
RsaI GTAC 2 cut(s) 356, 461
RsaNI GTAC 2 cut(s) 355, 460
RseI CAYNNNNRTG 1 cut(s) 266
SapI GCTCTTC 1 cut(s) 194
SatI GCNGC 2 cut(s) 285, 311
Sau96I GGNCC 2 cut(s) 125, 333
ScaI AGTACT 1 cut(s) 461
SchI GAGTC 2 cut(s) 200, 508
SduI GDGCHC 1 cut(s) 206
SetI ASST 3 cut(s) 33, 297, 375
SfcI CTRYAG 1 cut(s) 406
SfoI GGCGCC 1 cut(s) 283
SfuI TTCGAA 2 cut(s) 141, 573
SinI GGWCC 1 cut(s) 333
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 532
SmoI CTYRAG 1 cut(s) 532
Sse9I AATT 5 cut(s) 82, 143, 207, 401, 552
SsiI CCGC 6 cut(s) 155, 272, 285, 432, 449, 538
SspDI GGCGCC 1 cut(s) 281
TaaI ACNGT 4 cut(s) 184, 221, 380, 410
TaqI TCGA 4 cut(s) 53, 104, 141, 573
TasI AATT 5 cut(s) 82, 143, 207, 401, 552
TatI WGTACW 1 cut(s) 459
TauI GCSGC 1 cut(s) 287
TfiI GAWTC 1 cut(s) 340
TscAI CASTG 2 cut(s) 385, 415
TseFI GTSAC 1 cut(s) 410
TseI GCWGC 1 cut(s) 310
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 4 cut(s) 30, 272, 399, 513
TspRI CASTG 2 cut(s) 385, 415
VpaK11BI GGWCC 1 cut(s) 333
XapI RAATTY 2 cut(s) 143, 401
XcmI CCANNNNNNNNNTGG 1 cut(s) 503
ZrmI AGTACT 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.