Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0010654

Physical Location & Seq

Genomic Coordinates Forward (+)

15371812 .. 15375035

Gene Structure 3224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGCCTACTTTGGCTGGCTCGACTTCAGAGTCGAACCATTCCCACGCCATTTCTCACTCTCTCTGTCTGTCTCTCTCTCTCTCTGCACGCCAAAAGTCGGCAATCAGCGAGCCTCCGTCCCGCCACCAACGCCGACGCTGTTCATAGATCGTAAGCCGTTTGTCGAGGGCCATCCCTTCCCCACTTCGCTCAATTACCGGAGTACGCGAATCGAGACAACACAATCCTCGGCGACTAAGATGGGCGAAAACAAATCCGAAACTTTGTATTTTGATCTGAATACGGGAGCTAAGATCCCATCTGTTGGTCTTGGAACATGGAAGGCTGAACCAGGTGTGGTCGGTCAAGCTGTCATCGCTGCAGTCAAGAATGGCTACAGGCATATTGACTGTGCATCAGTCTACGGTAACGAAAAAGAGGTAGGAGTGGCATTGAAGGAACTATTTTCAACTGGCGTAGTACAGCGTAGCGAACTCTTTATTACATCTAAGTTATGGTGCAGTGACCATGCCCCTGAAGACGTATCTAAGGCACTGAGCAAGACTTTAGAAGATCTGCAGCTTGATTATATTGATCTATATCTTATACACTATCCACTTCGTACAAAACGAGGCTCAGTAGGTTTCGCTCCTGAAGTCATGGTTCCATTGTGCCTTCCAGAGACTTGGAATGCAATGGAGGGCCTGTACGCATCTGGTCAGGCACGAGCAGTCGGGGTGAGCAACTACTCGTCTAAGAAGCTGCAGGACCTCCTTTCTTATGCAAAAGTTCCACCTGCAGTAAATCAAGTGGAGTGCCACCCTATCTGGCAGCAACCGGCTCTTCACAATTTGTGCAAATCTGCTGGAATTCATCTGTCGGCATATTCTCCTCTGGGTTCTCCAGGGGTTTTGATGAAGGGGGAAGTTCTGAAGGATCCAGTACTGAATGAAATCGCCAAGAAACTCAACAAGTCAACCGCGCAAGTATGTCTTCGTTGGGGCATTCAGAGTGGACACAGCGTCCTTCCAAAGAGTGTAAATGAAAGTAGGATCAAGGAAAATCTAAGCTTATTCGACTGGTCCATTCCCCCAGAGCTCTTCTCGAAAATTTCGGGAATCCACCAGCAAAGGCTCCTACGGGGTGATTTCGTAGTCCATGAGAGCTTGAGTCCTTATAAAAGCGTTGAAGAACTGTGGGATGGTGAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0004033 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008106 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010035 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050661 GO:0050662 GO:0050896 GO:0055114 GO:0070401 GO:0097159 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00051 ko00052 ko00561 ko00790 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00051 map00052 map00561 map00790 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

398

Amino Acids

43.91

Weight (kDa)

8.06

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	103 - 366	4.2e-51	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37760 AT2G37760 AT2G37760 AT2G37760 AT2G37760 AT2G37760 AT2G37760
fragaria_vesca	FvH4_6g12990
malus_domestica	MD00G1141200.v1.1
prunus_persica	Prupe.6G262200_v2.0.a1 Prupe.6G262200_v2.0.a1
pyrus_communis	pycom04g12390
rosa_chinensis	RchiOBHm_Chr3g0465121
rosa_multiflora	Rmu_sc0018026.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415230
rosa_rugosa	Rorug03G0075600 Rorug03G0075600
rosa_samantha	Rh3BG139200 Rh3DG140500
rosa_wichuraiana	Rw3G011390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1158
AarI	CACCTGC	1 cut(s)	784
AasI	GACNNNNNNGTC	1 cut(s)	29
Acc36I	ACCTGC	1 cut(s)	784
AccB7I	CCANNNNNTGG	1 cut(s)	305
AccI	GTMKAC	1 cut(s)	402
AccII	CGCG	2 cut(s)	208, 962
AciI	CCGC	2 cut(s)	122, 960
AclWI	GGATC	4 cut(s)	289, 911, 924, 1040
AcsI	RAATTY	2 cut(s)	849, 1089
AcuI	CTGAAG	4 cut(s)	10, 537, 654, 932
AfaI	GTAC	5 cut(s)	205, 462, 604, 689, 924
AfiI	CCNNNNNNNGG	2 cut(s)	98, 305
AgsI	TTSAA	3 cut(s)	436, 450, 1169
AhdI	GACNNNNNGTC	1 cut(s)	1001
AjnI	CCWGG	2 cut(s)	331, 883
AluBI	AGCT	7 cut(s)	290, 350, 562, 742, 1050, 1078, 1146
AluI	AGCT	7 cut(s)	290, 350, 562, 742, 1050, 1078, 1146
Alw21I	GWGCWC	1 cut(s)	1080
Alw26I	GTCTC	3 cut(s)	76, 209, 656
AlwI	GGATC	4 cut(s)	289, 911, 924, 1040
AoxI	GGCC	3 cut(s)	3, 169, 682
ApeKI	GCWGC	4 cut(s)	359, 559, 742, 811
ApoI	RAATTY	2 cut(s)	849, 1089
AspLEI	GCGC	1 cut(s)	964
AspS9I	GGNCC	4 cut(s)	169, 682, 748, 1062
AsuHPI	GGTGA	2 cut(s)	730, 1136
AvaII	GGWCC	2 cut(s)	748, 1062
BamHI	GGATCC	1 cut(s)	916
BanII	GRGCYC	1 cut(s)	1080
BauI	CACGAG	1 cut(s)	705
BbsI	GAAGAC	2 cut(s)	525, 965
Bbv12I	GWGCWC	1 cut(s)	1080
BbvI	GCAGC	4 cut(s)	346, 571, 729, 823
BccI	CCATC	4 cut(s)	180, 235, 307, 1175
BceAI	ACGGC	1 cut(s)	142
BciT130I	CCWGG	2 cut(s)	333, 885
BcoDI	GTCTC	3 cut(s)	76, 209, 656
BfmI	CTRYAG	5 cut(s)	360, 376, 557, 743, 777
BfuAI	ACCTGC	1 cut(s)	784
BglII	AGATCT	1 cut(s)	553
BisI	GCNGC	4 cut(s)	360, 560, 743, 812
BlsI	GCNGC	4 cut(s)	361, 561, 744, 813
BmcAI	AGTACT	1 cut(s)	924
Bme1390I	CCNGG	2 cut(s)	333, 885
Bme18I	GGWCC	2 cut(s)	748, 1062
BmeRI	GACNNNNNGTC	1 cut(s)	1001
BmgT120I	GGNCC	4 cut(s)	169, 682, 748, 1062
BmiI	GGNNCC	3 cut(s)	645, 918, 1115
BmrFI	CCNGG	2 cut(s)	333, 885
BmsI	GCATC	2 cut(s)	404, 701
BpiI	GAAGAC	2 cut(s)	525, 965
BplI	GAGNNNNNCTC	2 cut(s)	1067, 1099
BpmI	CTGGAG	1 cut(s)	867
BpuEI	CTTGAG	1 cut(s)	1168
BsaBI	GATNNNNATC	1 cut(s)	579
BsaJI	CCNNGG	2 cut(s)	228, 884
BsaWI	WCCGGW	1 cut(s)	198
BsaXI	ACNNNNNCTCC	2 cut(s)	671, 701
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 305
Bse118I	RCCGGY	1 cut(s)	817
Bse1I	ACTGG	3 cut(s)	457, 920, 1064
Bse3DI	GCAATG	1 cut(s)	681
Bse8I	GATNNNNATC	1 cut(s)	579
BseBI	CCWGG	2 cut(s)	333, 885
BseDI	CCNNGG	2 cut(s)	228, 884
BseGI	GGATG	2 cut(s)	172, 1186
BseJI	GATNNNNATC	1 cut(s)	579
BseLI	CCNNNNNNNGG	2 cut(s)	98, 305
BseMI	GCAATG	1 cut(s)	681
BseMII	CTCAG	2 cut(s)	527, 630
BseNI	ACTGG	3 cut(s)	457, 920, 1064
BseRI	GAGGAG	1 cut(s)	861
BseXI	GCAGC	4 cut(s)	346, 571, 729, 823
BsgI	GTGCAG	2 cut(s)	70, 520
Bsh1236I	CGCG	2 cut(s)	208, 962
BshFI	GGCC	3 cut(s)	5, 171, 684
BsiHKAI	GWGCWC	1 cut(s)	1080
BsiSI	CCGG	2 cut(s)	199, 818
BslFI	GGGAC	1 cut(s)	104
BslI	CCNNNNNNNGG	2 cut(s)	98, 305
BsmAI	GTCTC	3 cut(s)	76, 209, 656
BsmFI	GGGAC	1 cut(s)	104
BsmI	GAATGC	2 cut(s)	676, 984
BsnI	GGCC	3 cut(s)	5, 171, 684
Bsp1286I	GDGCHC	1 cut(s)	1080
Bsp143I	GATC	7 cut(s)	148, 274, 294, 553, 574, 916, 1032
BspACI	CCGC	2 cut(s)	122, 960
BspANI	GGCC	3 cut(s)	5, 171, 684
BspCNI	CTCAG	2 cut(s)	528, 629
BspFNI	CGCG	2 cut(s)	208, 962
BspLI	GGNNCC	3 cut(s)	645, 918, 1115
BspMAI	CTGCAG	4 cut(s)	364, 561, 747, 781
BspMI	ACCTGC	1 cut(s)	784
BspPI	GGATC	4 cut(s)	289, 911, 924, 1040
BspQI	GCTCTTC	2 cut(s)	828, 1085
BsrDI	GCAATG	1 cut(s)	681
BsrFI	RCCGGY	1 cut(s)	817
BsrI	ACTGG	3 cut(s)	457, 920, 1064
BssAI	RCCGGY	1 cut(s)	817
BssECI	CCNNGG	2 cut(s)	228, 884
BssMI	GATC	7 cut(s)	148, 274, 294, 553, 574, 916, 1032
BssSI	CACGAG	1 cut(s)	705
Bst2BI	CACGAG	1 cut(s)	705
Bst2UI	CCWGG	2 cut(s)	333, 885
Bst4CI	ACNGT	3 cut(s)	392, 407, 1176
Bst6I	CTCTTC	2 cut(s)	828, 1085
BstC8I	GCNNGC	3 cut(s)	17, 89, 111
BstDEI	CTNAG	8 cut(s)	237, 291, 489, 528, 536, 616, 735, 1046
BstF5I	GGATG	2 cut(s)	172, 1186
BstFNI	CGCG	2 cut(s)	208, 962
BstHHI	GCGC	1 cut(s)	964
BstKTI	GATC	7 cut(s)	151, 277, 297, 556, 577, 919, 1035
BstMAI	GTCTC	3 cut(s)	76, 209, 656
BstMBI	GATC	7 cut(s)	148, 274, 294, 553, 574, 916, 1032
BstMWI	GCNNNNNNNGC	2 cut(s)	130, 356
BstNI	CCWGG	2 cut(s)	333, 885
BstSCI	CCNGG	2 cut(s)	331, 883
BstSFI	CTRYAG	5 cut(s)	360, 376, 557, 743, 777
BstUI	CGCG	2 cut(s)	208, 962
BstV1I	GCAGC	4 cut(s)	346, 571, 729, 823
BstV2I	GAAGAC	2 cut(s)	525, 965
BstX2I	RGATCY	3 cut(s)	294, 553, 916
BstXI	CCANNNNNNTGG	1 cut(s)	666
BstYI	RGATCY	3 cut(s)	294, 553, 916
BsuRI	GGCC	3 cut(s)	5, 171, 684
BtgZI	GCGATG	1 cut(s)	340
BtsCI	GGATG	2 cut(s)	172, 1186
BtsI	GCAGTG	1 cut(s)	508
BtsIMutI	CAGTG	2 cut(s)	508, 533
BveI	ACCTGC	1 cut(s)	784
Cac8I	GCNNGC	3 cut(s)	17, 89, 111
CfoI	GCGC	1 cut(s)	964
Cfr10I	RCCGGY	1 cut(s)	817
Cfr13I	GGNCC	4 cut(s)	169, 682, 748, 1062
CseI	GACGC	2 cut(s)	145, 991
CsiI	ACCWGGT	1 cut(s)	331
Csp6I	GTAC	5 cut(s)	204, 461, 603, 688, 923
CviAII	CATG	4 cut(s)	318, 509, 640, 1139
CviQI	GTAC	5 cut(s)	204, 461, 603, 688, 923
DdeI	CTNAG	8 cut(s)	237, 291, 489, 528, 536, 616, 735, 1046
DpnI	GATC	7 cut(s)	150, 276, 296, 555, 576, 918, 1034
DpnII	GATC	7 cut(s)	148, 274, 294, 553, 574, 916, 1032
DrdI	GACNNNNNNGTC	1 cut(s)	29
DriI	GACNNNNNGTC	1 cut(s)	1001
DseDI	GACNNNNNNGTC	1 cut(s)	29
Eam1104I	CTCTTC	2 cut(s)	828, 1085
Eam1105I	GACNNNNNGTC	1 cut(s)	1001
EarI	CTCTTC	2 cut(s)	828, 1085
Ecl136II	GAGCTC	1 cut(s)	1078
Eco24I	GRGCYC	1 cut(s)	1080
Eco47I	GGWCC	2 cut(s)	748, 1062
Eco53kI	GAGCTC	1 cut(s)	1078
Eco57I	CTGAAG	4 cut(s)	10, 537, 654, 932
EcoICRI	GAGCTC	1 cut(s)	1078
EcoO109I	RGGNCCY	2 cut(s)	682, 748
EcoRI	GAATTC	1 cut(s)	849
EcoRII	CCWGG	2 cut(s)	331, 883
EcoT38I	GRGCYC	1 cut(s)	1080
FaeI	CATG	4 cut(s)	321, 512, 643, 1142
FalI	AAGNNNNNCTT	2 cut(s)	957, 989
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	4 cut(s)	317, 508, 639, 1138
FauI	CCCGC	1 cut(s)	129
FblI	GTMKAC	1 cut(s)	402
Fnu4HI	GCNGC	4 cut(s)	360, 560, 743, 812
FokI	GGATG	1 cut(s)	159
FriOI	GRGCYC	1 cut(s)	1080
Fsp4HI	GCNGC	4 cut(s)	360, 560, 743, 812
GlaI	GCGC	1 cut(s)	963
GluI	GCNGC	4 cut(s)	360, 560, 743, 812
GsuI	CTGGAG	1 cut(s)	867
HaeIII	GGCC	3 cut(s)	5, 171, 684
HapII	CCGG	2 cut(s)	199, 818
HgaI	GACGC	2 cut(s)	145, 991
HhaI	GCGC	1 cut(s)	964
Hin1II	CATG	4 cut(s)	321, 512, 643, 1142
Hin6I	GCGC	1 cut(s)	962
HinP1I	GCGC	1 cut(s)	962
HincII	GTYRAC	1 cut(s)	957
HindII	GTYRAC	1 cut(s)	957
HindIII	AAGCTT	1 cut(s)	1048
HinfI	GANTC	4 cut(s)	30, 210, 1098, 1150
HpaII	CCGG	2 cut(s)	199, 818
HphI	GGTGA	2 cut(s)	730, 1136
Hpy166II	GTNNAC	3 cut(s)	403, 957, 995
Hpy188I	TCNGA	5 cut(s)	29, 259, 279, 912, 990
Hpy188III	TCNNGA	6 cut(s)	214, 367, 632, 659, 1084, 1095
Hpy8I	GTNNAC	3 cut(s)	403, 957, 995
Hpy99I	CGWCG	1 cut(s)	139
HpyAV	CCTTC	7 cut(s)	187, 316, 430, 665, 892, 907, 1016
HpyCH4III	ACNGT	3 cut(s)	392, 407, 1176
HpyCH4IV	ACGT	1 cut(s)	522
HpyF10VI	GCNNNNNNNGC	2 cut(s)	130, 356
HpyF3I	CTNAG	8 cut(s)	237, 291, 489, 528, 536, 616, 735, 1046
HpySE526I	ACGT	1 cut(s)	522
Hsp92II	CATG	4 cut(s)	321, 512, 643, 1142
HspAI	GCGC	1 cut(s)	962
Kzo9I	GATC	7 cut(s)	148, 274, 294, 553, 574, 916, 1032
LguI	GCTCTTC	2 cut(s)	828, 1085
LmnI	GCTCC	3 cut(s)	287, 634, 1119
Lsp1109I	GCAGC	4 cut(s)	346, 571, 729, 823
LweI	GCATC	2 cut(s)	404, 701
MabI	ACCWGGT	1 cut(s)	331
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	2 cut(s)	407, 503
MalI	GATC	7 cut(s)	150, 276, 296, 555, 576, 918, 1034
MboI	GATC	7 cut(s)	148, 274, 294, 553, 574, 916, 1032
MboII	GAAGA	6 cut(s)	530, 563, 815, 965, 1072, 1181
MflI	RGATCY	3 cut(s)	294, 553, 916
MhlI	GDGCHC	1 cut(s)	1080
MluCI	AATT	4 cut(s)	193, 829, 849, 1089
MlyI	GAGTC	2 cut(s)	39, 1159
MnlI	CCTC	8 cut(s)	124, 160, 238, 412, 605, 673, 761, 882
MspI	CCGG	2 cut(s)	199, 818
MspR9I	CCNGG	2 cut(s)	333, 885
Mva1269I	GAATGC	2 cut(s)	676, 984
MvaI	CCWGG	2 cut(s)	333, 885
MvnI	CGCG	2 cut(s)	208, 962
MwoI	GCNNNNNNNGC	2 cut(s)	130, 356
NdeII	GATC	7 cut(s)	148, 274, 294, 553, 574, 916, 1032
NlaIII	CATG	4 cut(s)	321, 512, 643, 1142
NlaIV	GGNNCC	3 cut(s)	645, 918, 1115
NmeAIII	GCCGAG	1 cut(s)	209
NmuCI	GTSAC	1 cut(s)	503
PaqCI	CACCTGC	1 cut(s)	784
PciSI	GCTCTTC	2 cut(s)	828, 1085
PcsI	WCGNNNNNNNCGW	1 cut(s)	607
PctI	GAATGC	2 cut(s)	676, 984
PfeI	GAWTC	2 cut(s)	210, 1098
PflMI	CCANNNNNTGG	1 cut(s)	305
PkrI	GCNGC	4 cut(s)	361, 561, 744, 813
PleI	GAGTC	2 cut(s)	38, 1158
PpsI	GAGTC	2 cut(s)	38, 1158
PpuMI	RGGWCCY	1 cut(s)	748
PsiI	TTATAA	1 cut(s)	1158
Psp124BI	GAGCTC	1 cut(s)	1080
Psp5II	RGGWCCY	1 cut(s)	748
Psp6I	CCWGG	2 cut(s)	331, 883
PspGI	CCWGG	2 cut(s)	331, 883
PspN4I	GGNNCC	3 cut(s)	645, 918, 1115
PspPI	GGNCC	4 cut(s)	169, 682, 748, 1062
PspPPI	RGGWCCY	1 cut(s)	748
PstI	CTGCAG	4 cut(s)	364, 561, 747, 781
PsuI	RGATCY	3 cut(s)	294, 553, 916
RsaI	GTAC	5 cut(s)	205, 462, 604, 689, 924
RsaNI	GTAC	5 cut(s)	204, 461, 603, 688, 923
SacI	GAGCTC	1 cut(s)	1080
SapI	GCTCTTC	2 cut(s)	828, 1085
SatI	GCNGC	4 cut(s)	360, 560, 743, 812
Sau3AI	GATC	7 cut(s)	148, 274, 294, 553, 574, 916, 1032
Sau96I	GGNCC	4 cut(s)	169, 682, 748, 1062
ScaI	AGTACT	1 cut(s)	924
SchI	GAGTC	2 cut(s)	39, 1159
ScrFI	CCNGG	2 cut(s)	333, 885
SduI	GDGCHC	1 cut(s)	1080
SexAI	ACCWGGT	1 cut(s)	331
SfaNI	GCATC	2 cut(s)	404, 701
SfcI	CTRYAG	5 cut(s)	360, 376, 557, 743, 777
SinI	GGWCC	2 cut(s)	748, 1062
SmlI	CTYRAG	1 cut(s)	1147
SmoI	CTYRAG	1 cut(s)	1147
Sse9I	AATT	4 cut(s)	193, 829, 849, 1089
SsiI	CCGC	2 cut(s)	122, 960
SstI	GAGCTC	1 cut(s)	1080
StyD4I	CCNGG	2 cut(s)	331, 883
TaaI	ACNGT	3 cut(s)	392, 407, 1176
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	6 cut(s)	21, 33, 165, 213, 1056, 1085
TaqII	GACCGA	1 cut(s)	332
TasI	AATT	4 cut(s)	193, 829, 849, 1089
TatI	WGTACW	2 cut(s)	460, 922
TfiI	GAWTC	2 cut(s)	210, 1098
TscAI	CASTG	2 cut(s)	508, 540
TseFI	GTSAC	1 cut(s)	503
TseI	GCWGC	4 cut(s)	359, 559, 742, 811
Tsp45I	GTSAC	1 cut(s)	503
TspDTI	ATGAA	5 cut(s)	133, 842, 911, 945, 1038
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	2 cut(s)	508, 540
Van91I	CCANNNNNTGG	1 cut(s)	305
VpaK11BI	GGWCC	2 cut(s)	748, 1062
XapI	RAATTY	2 cut(s)	849, 1089
XmiI	GTMKAC	1 cut(s)	402
ZrmI	AGTACT	1 cut(s)	924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.