Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0019317

Physical Location & Seq

Genomic Coordinates Reverse (-)

16674974 .. 16675405

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g13690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGAGGTTGCTCAAAATTCAATTCACTCCAAAAAACGCTACCAGAGGCTGGCGTGGTTCTTGCATGACCCAGGGAACATGTCATCGTTAAGCAAGAACCTCCTTACAGAGACATATATGACAGTGGGGTTGACGAAGGCACAAGAGAGGGAGGCCTGTGTGGATTCATTCTTGCCATCACCATCTCAAACAACCAAGTATTCATGGGAGTTCTCAAGATCCGTCGAAAACAACGTGATTTGGGTTTCCAAGTCTGATGAGATTCTTCTGGATCTCTGGAAACCAGTTGTCAAGTACGAGTTTTCTCATCTCGTGACGACTTCAGGTCGTAAATTTCAATTTTTTCACCGGAATTCGGTGGGGCGCTTCTGGCGCAGTGGGAGAGACGAAAAATGGACATACCTTTTATTCTGTAAGATTTTAGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005839 GO:0005840 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0019774 GO:0022626 GO:0032991 GO:0042221 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046686 GO:0050896 GO:1902494 GO:1905368 GO:1905369 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

144

Amino Acids

16.91

Weight (kDa)

9.12

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019317)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g05930 pycom04g09980 pycom04g13690 pycom05g15520 pycom07g05540 pycom09g03940 pycom13g03240 pycom16g04970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	49
AclWI	GGATC	2 cut(s)	213, 279
AcsI	RAATTY	3 cut(s)	16, 332, 352
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	2 cut(s)	49, 355
AflIII	ACRYGT	1 cut(s)	78
AgsI	TTSAA	2 cut(s)	21, 338
AhdI	GACNNNNNGTC	1 cut(s)	324
AjnI	CCWGG	1 cut(s)	70
Alw26I	GTCTC	2 cut(s)	104, 378
AlwI	GGATC	2 cut(s)	213, 279
AlwNI	CAGNNNCTG	1 cut(s)	49
AoxI	GGCC	1 cut(s)	153
ApoI	RAATTY	3 cut(s)	16, 332, 352
AspLEI	GCGC	2 cut(s)	366, 375
AsuHPI	GGTGA	2 cut(s)	171, 338
BauI	CACGAG	1 cut(s)	311
BccI	CCATC	2 cut(s)	184, 190
BciT130I	CCWGG	1 cut(s)	72
BcoDI	GTCTC	2 cut(s)	104, 378
BfoI	RGCGCY	1 cut(s)	367
Bme1390I	CCNGG	1 cut(s)	72
BmeRI	GACNNNNNGTC	1 cut(s)	324
BmrFI	CCNGG	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	199
BsaJI	CCNNGG	2 cut(s)	70, 71
BsaWI	WCCGGW	1 cut(s)	348
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 355
Bse1I	ACTGG	1 cut(s)	284
BseBI	CCWGG	1 cut(s)	72
BseDI	CCNNGG	2 cut(s)	70, 71
BseLI	CCNNNNNNNGG	2 cut(s)	49, 355
BseNI	ACTGG	1 cut(s)	284
BshFI	GGCC	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	349
BslI	CCNNNNNNNGG	2 cut(s)	49, 355
BsmAI	GTCTC	2 cut(s)	104, 378
BsmBI	CGTCTC	1 cut(s)	378
BsnI	GGCC	1 cut(s)	155
Bsp143I	GATC	2 cut(s)	218, 271
BspANI	GGCC	1 cut(s)	155
BspPI	GGATC	2 cut(s)	213, 279
BsrI	ACTGG	1 cut(s)	284
BssECI	CCNNGG	2 cut(s)	70, 71
BssMI	GATC	2 cut(s)	218, 271
BssSI	CACGAG	1 cut(s)	311
Bst2BI	CACGAG	1 cut(s)	311
Bst2UI	CCWGG	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	51
BstH2I	RGCGCY	1 cut(s)	367
BstHHI	GCGC	2 cut(s)	366, 375
BstKTI	GATC	2 cut(s)	221, 274
BstMAI	GTCTC	2 cut(s)	104, 378
BstMBI	GATC	2 cut(s)	218, 271
BstMWI	GCNNNNNNNGC	2 cut(s)	370, 372
BstNI	CCWGG	1 cut(s)	72
BstNSI	RCATGY	1 cut(s)	82
BstSCI	CCNGG	1 cut(s)	70
BstX2I	RGATCY	2 cut(s)	218, 271
BstYI	RGATCY	2 cut(s)	218, 271
BsuRI	GGCC	1 cut(s)	155
BtsI	GCAGTG	1 cut(s)	382
BtsIMutI	CAGTG	2 cut(s)	129, 382
Cac8I	GCNNGC	1 cut(s)	51
CaiI	CAGNNNCTG	1 cut(s)	49
CfoI	GCGC	2 cut(s)	366, 375
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	3 cut(s)	65, 79, 204
CviJI	RGCY	2 cut(s)	49, 155
CviKI_1	RGCY	2 cut(s)	49, 155
CviQI	GTAC	1 cut(s)	295
DpnI	GATC	2 cut(s)	220, 273
DpnII	GATC	2 cut(s)	218, 271
DriI	GACNNNNNGTC	1 cut(s)	324
Eam1105I	GACNNNNNGTC	1 cut(s)	324
Eco147I	AGGCCT	1 cut(s)	155
Eco57I	CTGAAG	1 cut(s)	306
EcoRI	GAATTC	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	70
Esp3I	CGTCTC	1 cut(s)	378
FaeI	CATG	3 cut(s)	68, 82, 207
FaiI	YATR	7 cut(s)	66, 80, 115, 117, 119, 205, 400
FatI	CATG	3 cut(s)	64, 78, 203
GlaI	GCGC	2 cut(s)	365, 374
HaeII	RGCGCY	1 cut(s)	367
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	1 cut(s)	349
HhaI	GCGC	2 cut(s)	366, 375
Hin1II	CATG	3 cut(s)	68, 82, 207
Hin6I	GCGC	2 cut(s)	364, 373
HinP1I	GCGC	2 cut(s)	364, 373
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HinfI	GANTC	2 cut(s)	164, 262
HpaII	CCGG	1 cut(s)	349
HphI	GGTGA	2 cut(s)	171, 338
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	4 cut(s)	216, 269, 277, 313
Hpy8I	GTNNAC	1 cut(s)	132
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	1 cut(s)	64
HpyF10VI	GCNNNNNNNGC	2 cut(s)	370, 372
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	3 cut(s)	68, 82, 207
HspAI	GCGC	2 cut(s)	364, 373
Kzo9I	GATC	2 cut(s)	218, 271
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	2 cut(s)	220, 273
MboI	GATC	2 cut(s)	218, 271
MboII	GAAGA	1 cut(s)	257
MflI	RGATCY	2 cut(s)	218, 271
MluCI	AATT	5 cut(s)	16, 21, 332, 338, 352
MnlI	CCTC	4 cut(s)	39, 110, 141, 145
MseI	TTAA	1 cut(s)	89
MspI	CCGG	1 cut(s)	349
MspR9I	CCNGG	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	72
MwoI	GCNNNNNNNGC	2 cut(s)	370, 372
NdeII	GATC	2 cut(s)	218, 271
NlaIII	CATG	3 cut(s)	68, 82, 207
NmuCI	GTSAC	1 cut(s)	313
NspI	RCATGY	1 cut(s)	82
PasI	CCCWGGG	1 cut(s)	71
PceI	AGGCCT	1 cut(s)	155
PciI	ACATGT	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PfeI	GAWTC	2 cut(s)	164, 262
PflMI	CCANNNNNTGG	1 cut(s)	49
PscI	ACATGT	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	70
PstNI	CAGNNNCTG	1 cut(s)	49
PsuI	RGATCY	2 cut(s)	218, 271
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SaqAI	TTAA	1 cut(s)	89
Sau3AI	GATC	2 cut(s)	218, 271
ScrFI	CCNGG	1 cut(s)	72
SetI	ASST	5 cut(s)	9, 102, 237, 328, 405
SmlI	CTYRAG	1 cut(s)	214
SmoI	CTYRAG	1 cut(s)	214
Sse9I	AATT	5 cut(s)	16, 21, 332, 338, 352
SseBI	AGGCCT	1 cut(s)	155
StuI	AGGCCT	1 cut(s)	155
StyD4I	CCNGG	1 cut(s)	70
TaaI	ACNGT	1 cut(s)	124
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	1 cut(s)	225
TasI	AATT	5 cut(s)	16, 21, 332, 338, 352
TfiI	GAWTC	2 cut(s)	164, 262
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TscAI	CASTG	2 cut(s)	129, 382
TseFI	GTSAC	1 cut(s)	313
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	2 cut(s)	156, 192
TspGWI	ACGGA	1 cut(s)	211
TspRI	CASTG	2 cut(s)	129, 382
Van91I	CCANNNNNTGG	1 cut(s)	49
XapI	RAATTY	3 cut(s)	16, 332, 352
XceI	RCATGY	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.