pycom04g13930

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0015650
Physical Location & Seq
Reverse (-)
16799039 .. 16800864
1826 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 639 bp
ATGCCTCCTCAGATCAGAAACCACAACAGATGGCCAGCTCTCCCAACTTCATGCAGGAAATTGATTGAAGAATACAGCGAAGAAACAATTAAACTGTGTGGGATTCTGATGAAGGTGTTGTCTCTAAACCTTGGCCTTGGGGAAGACCAACTTCTCGATGCTTTCGGAGGAGAAGAGAATGTTGGGGCATGTTTACGGGTCAATTTCTACCCAAAATGCCCTCAACCAGATCTAACCCTTGGTCTCTCAGAACACTCTGACCCAGGAGGCCTGACCCTTCTCTTACCTGATGAAAATGTTGCTGGACTTCAAGTTCGTAAAGGTGAAAATTGGGTGACTGTGAAGCCTGTTCCTAATGCCTTCATCGTGAACATCGGAGATCGATCTCAGGTGCTGAGCAATGCAATTTACAAAAGTGTAGAACATAGAGTGATTGTGAATTCAGTTGAAGACAGAGTTTCACTGGCCTTGTTTTACAACCCAAAAAGTGATTTGATGATTGAACCTGCCAAAGCTCTTGTCACAAATGATCGCCCTGCCCTTTACTCGCCTATGACATTTGATGAGTATCGGCTTTATATTAGGATGAAGGGGCCTTGTGGAAAGGCGCAAGTTGAATCTTTAAAGTCCTATGAATAG

Protein Analysis

213

Amino Acids

23.67

Weight (kDa)

5.72

Isoelectric Point (pI)

47.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 63 - 161 5.5e-33 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015650)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11360
malus_domestica MD04G1154400.v1.1 MD12G1168100.v1.1
prunus_persica Prupe.6G278400_v2.0.a1
pyrus_communis pycom04g13930 pycom12g15960
rosa_chinensis RchiOBHm_Chr3g0462961
rosa_laevigata RLG00000024821
rosa_multiflora Rmu_sc0000766.1_g000023
rosa_roxburghii Rroxscaffold_6G00417080
rosa_rugosa Rorug03G0060300
rosa_samantha Rh3AG118500 Rh3BG123500 Rh3CG125200 Rh3DG124200
rosa_wichuraiana Rw3G010050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 514
AcoI YGGCCR 1 cut(s) 32
AcsI RAATTY 1 cut(s) 439
AgsI TTSAA 5 cut(s) 68, 311, 449, 503, 617
AjnI CCWGG 1 cut(s) 262
AjuI GAANNNNNNNTTGG 2 cut(s) 165, 197
AloI GAACNNNNNNTCC 2 cut(s) 297, 329
AluBI AGCT 2 cut(s) 38, 515
AluI AGCT 2 cut(s) 38, 515
Alw26I GTCTC 2 cut(s) 126, 248
AlwNI CAGNNNCTG 1 cut(s) 394
AoxI GGCC 5 cut(s) 32, 133, 268, 465, 593
ApoI RAATTY 1 cut(s) 439
ArsI GACNNNNNNTTYG 4 cut(s) 297, 329, 504, 536
AspLEI GCGC 1 cut(s) 610
AspS9I GGNCC 1 cut(s) 593
AsuHPI GGTGA 2 cut(s) 335, 346
BalI TGGCCA 1 cut(s) 34
BbsI GAAGAC 2 cut(s) 150, 456
BccI CCATC 1 cut(s) 24
BciT130I CCWGG 1 cut(s) 264
BcoDI GTCTC 2 cut(s) 126, 248
BfuAI ACCTGC 1 cut(s) 514
BglII AGATCT 1 cut(s) 229
BlpI GCTNAGC 1 cut(s) 395
Bme1390I CCNGG 1 cut(s) 264
BmgT120I GGNCC 1 cut(s) 593
BmiI GGNNCC 1 cut(s) 594
BmrFI CCNGG 1 cut(s) 264
BmsI GCATC 1 cut(s) 148
BpiI GAAGAC 2 cut(s) 150, 456
Bpu1102I GCTNAGC 1 cut(s) 395
Bsa29I ATCGAT 1 cut(s) 382
BsaBI GATNNNNATC 1 cut(s) 567
BsaI GGTCTC 1 cut(s) 248
BsaJI CCNNGG 4 cut(s) 130, 136, 238, 262
Bse1I ACTGG 1 cut(s) 468
Bse3DI GCAATG 1 cut(s) 406
Bse8I GATNNNNATC 1 cut(s) 567
BseBI CCWGG 1 cut(s) 264
BseCI ATCGAT 1 cut(s) 382
BseDI CCNNGG 4 cut(s) 130, 136, 238, 262
BseGI GGATG 1 cut(s) 591
BseJI GATNNNNATC 1 cut(s) 567
BseMI GCAATG 1 cut(s) 406
BseMII CTCAG 4 cut(s) 23, 261, 386, 401
BseNI ACTGG 1 cut(s) 468
BseRI GAGGAG 1 cut(s) 183
BshFI GGCC 5 cut(s) 34, 135, 270, 467, 595
BshVI ATCGAT 1 cut(s) 382
BsmAI GTCTC 2 cut(s) 126, 248
BsnI GGCC 5 cut(s) 34, 135, 270, 467, 595
Bso31I GGTCTC 1 cut(s) 248
Bsp143I GATC 5 cut(s) 12, 229, 379, 383, 529
Bsp1720I GCTNAGC 1 cut(s) 395
BspANI GGCC 5 cut(s) 34, 135, 270, 467, 595
BspCNI CTCAG 4 cut(s) 22, 260, 387, 400
BspDI ATCGAT 1 cut(s) 382
BspLI GGNNCC 1 cut(s) 594
BspMI ACCTGC 1 cut(s) 514
BspTNI GGTCTC 1 cut(s) 248
BsrDI GCAATG 1 cut(s) 406
BsrI ACTGG 1 cut(s) 468
BssECI CCNNGG 4 cut(s) 130, 136, 238, 262
BssMI GATC 5 cut(s) 12, 229, 379, 383, 529
BssT1I CCWWGG 3 cut(s) 130, 136, 238
Bst2UI CCWGG 1 cut(s) 264
Bst4CI ACNGT 2 cut(s) 96, 340
Bst6I CTCTTC 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 4 cut(s) 9, 247, 387, 395
BstF5I GGATG 1 cut(s) 591
BstHHI GCGC 1 cut(s) 610
BstKTI GATC 5 cut(s) 15, 232, 382, 386, 532
BstMAI GTCTC 2 cut(s) 126, 248
BstMBI GATC 5 cut(s) 12, 229, 379, 383, 529
BstNI CCWGG 1 cut(s) 264
BstNSI RCATGY 1 cut(s) 192
BstSCI CCNGG 1 cut(s) 262
BstV2I GAAGAC 2 cut(s) 150, 456
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
Bsu15I ATCGAT 1 cut(s) 382
BsuRI GGCC 5 cut(s) 34, 135, 270, 467, 595
BsuTUI ATCGAT 1 cut(s) 382
BtsCI GGATG 1 cut(s) 591
BtsIMutI CAGTG 1 cut(s) 461
BveI ACCTGC 1 cut(s) 514
Cac8I GCNNGC 1 cut(s) 36
CaiI CAGNNNCTG 1 cut(s) 394
CfoI GCGC 1 cut(s) 610
Cfr13I GGNCC 1 cut(s) 593
ClaI ATCGAT 1 cut(s) 382
CviAII CATG 2 cut(s) 51, 189
CviJI RGCY 9 cut(s) 34, 38, 135, 270, 346, 467, 515, 574, 595
CviKI_1 RGCY 9 cut(s) 34, 38, 135, 270, 346, 467, 515, 574, 595
DdeI CTNAG 4 cut(s) 9, 247, 387, 395
DpnI GATC 5 cut(s) 14, 231, 381, 385, 531
DpnII GATC 5 cut(s) 12, 229, 379, 383, 529
DraI TTTAAA 1 cut(s) 624
EaeI YGGCCR 1 cut(s) 32
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco130I CCWWGG 3 cut(s) 130, 136, 238
Eco147I AGGCCT 1 cut(s) 270
Eco31I GGTCTC 1 cut(s) 248
EcoO109I RGGNCCY 1 cut(s) 593
EcoRI GAATTC 1 cut(s) 439
EcoRII CCWGG 1 cut(s) 262
EcoT14I CCWWGG 3 cut(s) 130, 136, 238
ErhI CCWWGG 3 cut(s) 130, 136, 238
FaeI CATG 2 cut(s) 54, 192
FaiI YATR 6 cut(s) 52, 190, 426, 554, 579, 633
FalI AAGNNNNNCTT 2 cut(s) 135, 167
FatI CATG 2 cut(s) 50, 188
FokI GGATG 1 cut(s) 598
GlaI GCGC 1 cut(s) 609
HaeIII GGCC 5 cut(s) 34, 135, 270, 467, 595
HhaI GCGC 1 cut(s) 610
Hin1II CATG 2 cut(s) 54, 192
Hin6I GCGC 1 cut(s) 608
HinP1I GCGC 1 cut(s) 608
HinfI GANTC 2 cut(s) 103, 617
HphI GGTGA 2 cut(s) 335, 346
Hpy166II GTNNAC 2 cut(s) 194, 370
Hpy188I TCNGA 7 cut(s) 12, 17, 108, 167, 250, 259, 377
Hpy188III TCNNGA 2 cut(s) 155, 367
Hpy8I GTNNAC 2 cut(s) 194, 370
HpyAV CCTTC 4 cut(s) 106, 287, 370, 583
HpyCH4III ACNGT 2 cut(s) 96, 340
HpyCH4V TGCA 2 cut(s) 54, 404
HpyF3I CTNAG 4 cut(s) 9, 247, 387, 395
Hsp92II CATG 2 cut(s) 54, 192
HspAI GCGC 1 cut(s) 608
Kzo9I GATC 5 cut(s) 12, 229, 379, 383, 529
LweI GCATC 1 cut(s) 148
MaeIII GTNAC 2 cut(s) 334, 520
MalI GATC 5 cut(s) 14, 231, 381, 385, 531
MboI GATC 5 cut(s) 12, 229, 379, 383, 529
MboII GAAGA 5 cut(s) 80, 92, 155, 185, 461
MflI RGATCY 1 cut(s) 229
MlsI TGGCCA 1 cut(s) 34
MluCI AATT 6 cut(s) 59, 87, 202, 328, 405, 439
MluNI TGGCCA 1 cut(s) 34
MnlI CCTC 5 cut(s) 15, 18, 161, 231, 260
Mox20I TGGCCA 1 cut(s) 34
MscI TGGCCA 1 cut(s) 34
MseI TTAA 2 cut(s) 90, 623
Msp20I TGGCCA 1 cut(s) 34
MspR9I CCNGG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 264
NdeII GATC 5 cut(s) 12, 229, 379, 383, 529
NlaIII CATG 2 cut(s) 54, 192
NlaIV GGNNCC 1 cut(s) 594
NmuCI GTSAC 2 cut(s) 334, 520
NspI RCATGY 1 cut(s) 192
PceI AGGCCT 1 cut(s) 270
PfeI GAWTC 2 cut(s) 103, 617
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 594
PspPI GGNCC 1 cut(s) 593
PstNI CAGNNNCTG 1 cut(s) 394
PsuI RGATCY 1 cut(s) 229
SaqAI TTAA 2 cut(s) 90, 623
Sau3AI GATC 5 cut(s) 12, 229, 379, 383, 529
Sau96I GGNCC 1 cut(s) 593
ScrFI CCNGG 1 cut(s) 264
SetI ASST 8 cut(s) 40, 117, 132, 289, 325, 393, 508, 517
SfaNI GCATC 1 cut(s) 148
Sse9I AATT 6 cut(s) 59, 87, 202, 328, 405, 439
SseBI AGGCCT 1 cut(s) 270
StuI AGGCCT 1 cut(s) 270
StyD4I CCNGG 1 cut(s) 262
StyI CCWWGG 3 cut(s) 130, 136, 238
TaaI ACNGT 2 cut(s) 96, 340
TaqI TCGA 2 cut(s) 156, 382
TasI AATT 6 cut(s) 59, 87, 202, 328, 405, 439
TfiI GAWTC 2 cut(s) 103, 617
Tru1I TTAA 2 cut(s) 90, 623
Tru9I TTAA 2 cut(s) 90, 623
TscAI CASTG 1 cut(s) 468
TseFI GTSAC 2 cut(s) 334, 520
Tsp45I GTSAC 2 cut(s) 334, 520
TspDTI ATGAA 5 cut(s) 39, 125, 306, 352, 602
TspRI CASTG 1 cut(s) 468
XapI RAATTY 1 cut(s) 439
XceI RCATGY 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.