pycom04g15410

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0015649
Physical Location & Seq
Reverse (-)
18306435 .. 18309313
2879 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2157 bp
ATGGTGGAGGCAAAGAAGGCGATGAAGGAAGTTGAAGCAAAAAATCAAGTGAAACTGTGGAAGCTCGGGGACGACGAGAGCTCCCTGCTCGACCATTTCGAGAGGCTCTCCATCGAGTTGCAACTCAACCAGGCAATGCTGCGTCGGAGTCTCTCCGAGCCGGCGTATATTCAGTCCGAGTTTCCTCTTTTAATCACTCAAGGTCCATCAGAACCGCCACCTCCACCACCATCACCGCCACATTTGGTTGCGAAGAAGAGACGTGGGTTGGGGTTTAACAAGCTTCTGAGGAAGATGATCAAACCGATTATGAGCAGAATGAGTGGAAAAAAGAAGGACATCCCAATCCCGGATGCCAAAGACCCCAGGTTTTGGAAGACGTTCAGTAGATCTACACAACTCCAGCAATTATCCATGGACCTCTCTCTGATGCCTTCTTGGTGCCCAGCACCCTGCACATTTTTTCACTCTCCATCTCTATCTCGTTTCTGCAGAACCCAATACAGCAGTAAGCTGCTTTTCCTCGCAGCACTTTCATCCTCAGCTACAAATCCCACCAACATCCACCAGAAGCCCCCAAAAGATTACATCTTTCAGTCCAAAAACGAAAACCCAAAGCCGAGTTTTGACGACCCAGCCAGCAGATTGCAGGTGCAGGATTTCATTGACAGAATCAGAGCTATGCCCTTCAAAAAAACAAGTGAAATTCTTGGTGTTTTTGAAAAAGATGGTTGTTTTCAAACCGTATCTGAATTCAATTCTCTGCTGATGGCTCTGGTAATAGCAGAAGAGCCTGATATTGCCTTGAGCTTGTTTGATGAAATATCATCAGCTCTGTGGTTGGTGCCAGATTCTCTGACATTTTCCATCCTGATAAGGTGTTACTGCGGTAAAAACGATCTGGATGGGGCCAGAGGGGTTTTAACCCACATGGTGGAAAATGGGTTTTACCCAGATCCTGCAACTTTTACTGTTCTGGTAAATGCATTCTGCAAGAGGGGTAGATTGCAGAGGGCTATGGAGGTTGTTGAGGTGATGGGTACGGTTGGTTTGAAGCCCACAGTGCAGATTTACAATTGCTTGCTGAAGGGGTTATGTTATGTGGGGAGAGTGGAGGATGCACATGATATGCTGATGAGAATAAAAAAAGATGAAGTGAAACCTGATATTTATACATTCACTGCTGTTATGGTTGGATTTTGTAAAGTGGGTCGATCGGATGAGGCGATGGAATTGCTCGTGGAAGCGATGGAGACCGGGTTGATTCCGGATGTGGTGAGCTTCAATGCTCTGTTTCATGGATACTGCAAGGAAGGGAGGCCCATGGAGGGGCTCAATGTGTTGAAGAAGATGAAGGAGATGAACTGCATTCCTGATTGCATCACTTACAGTAGTTTGCTGCATGGATTGTTGAAGTGGGGGAAGATTCGGAATGCGGTTAGGGTTTATGAGGAGATGGTGGAAAATGGGTTTGAAGTGGAGGAGAGATTGATGAACAATCTTGTGAGAGGGTTGTGTCGGAGATCATGGAAGGAAAAAGACCTCTTGGAAGATGCACACCAAGTGTTTGAGAAAATGCAGAGCGGGCATTCGGGTATAGATGCGAGTACGTATGGCCTGATGATCCAGAGTCTTTGCATGGGGAAGAAGATGGATGGGGCTTTGGTCCGTTTGCAGCAGATGGTTCGAAGGGGGCATTCGCCATGGATCGTCACCTTTAACAATGTGATTCAAGGCCTTTGTGTTGAGGGAAAGGTATTCGAAGCATTGTTAGTTTTGAGCATCATGTTCGAAGGGGGTAGAGCAACCAGTAGAGTATCGTATAACCCTGTAATTCAAGAACTGAATCGACAGGGGAGTTTCCTCGGTGCTTGTAGCGTTTATGGCGCGGCGTTGAAGAGAGTTTTTCTCAGCACGAGTCATGTATTGCCCGGTTCTGGTATCCACCAGTATTTCATCACCCACATTTACAAACAGCGGGACATAGACAACAGCACCGGTGTCAAGAATCGCTGGCCTTGTTCCACCTCCTGGGCAAGAAGACATGTGAATTTAAGAACGGGAAAACGAAAATTAATATGCCACCAAGAGGAGATATTCCATTCTCAAGAATTTCCTCTGAGAGACGGTGCAATGGCGGATTCTAAAAATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

719

Amino Acids

81.32

Weight (kDa)

8.93

Isoelectric Point (pI)

46.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 280 - 381 5.5e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 283 - 332 1.5e-11 PPR repeat family
PPR_3 PF13812 307 - 363 4.6e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 314 - 346 2.9e-08 PPR repeat
TPR_24 PF23276 322 - 412 2e-07 Fungal tetratrico peptide repeats
PPR_1 PF12854 350 - 378 6e-06 PPR repeat
PPR_2 PF13041 353 - 402 2.4e-12 PPR repeat family
PPR_3 PF13812 381 - 435 9.9e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 385 - 415 4.7e-07 PPR repeat
PPR_3 PF13812 412 - 467 2.8e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 420 - 452 2e-07 PPR repeat
PPR_2 PF13041 423 - 472 1.4e-15 PPR repeat family
PPR PF01535 426 - 456 2.3e-07 PPR repeat
PPR_1 PF12854 454 - 487 6.7e-06 PPR repeat
PPR PF01535 461 - 491 3.5e-06 PPR repeat
PPR_2 PF13041 534 - 581 6.3e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015649)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g09870
malus_domestica MD04G1174700.v1.1
prunus_persica Prupe.6G293600_v2.0.a1
pyrus_communis pycom04g15410
rosa_chinensis RchiOBHm_Chr3g0460471
rosa_laevigata RLG00000025002 RLG00000025008
rosa_multiflora Rmu_co8379257.1_g000001 Rmu_sc0004267.1_g000007
rosa_roxburghii Rroxscaffold_6G00419450
rosa_rugosa Rorug03G0042900
rosa_samantha Rh3AG101000 Rh3BG105000 Rh3CG106800 Rh3DG106300
rosa_wichuraiana Rw3G008590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 640
Acc36I ACCTGC 1 cut(s) 640
AccB1I GGYRCC 2 cut(s) 441, 844
AccB7I CCANNNNNTGG 3 cut(s) 372, 934, 2031
AccBSI CCGCTC 1 cut(s) 1584
AccII CGCG 1 cut(s) 1889
AccIII TCCGGA 1 cut(s) 1267
AciI CCGC 8 cut(s) 215, 236, 888, 1436, 1584, 1889, 1978, 2138
AclWI GGATC 3 cut(s) 950, 1618, 1715
AcsI RAATTY 5 cut(s) 705, 752, 2050, 2111, 2149
AcuI CTGAAG 1 cut(s) 1106
AdeI CACNNNGTG 2 cut(s) 934, 1564
AfaI GTAC 2 cut(s) 1042, 1609
AfiI CCNNNNNNNGG 8 cut(s) 349, 372, 934, 1328, 1329, 1937, 2031, 2089
AflIII ACRYGT 1 cut(s) 2044
AgeI ACCGGT 1 cut(s) 1997
AjiI CACGTC 1 cut(s) 263
AjnI CCWGG 3 cut(s) 129, 365, 2030
AluBI AGCT 9 cut(s) 64, 81, 283, 514, 545, 680, 810, 833, 1281
AluI AGCT 9 cut(s) 64, 81, 283, 514, 545, 680, 810, 833, 1281
Alw21I GWGCWC 1 cut(s) 83
Alw26I GTCTC 4 cut(s) 155, 253, 1247, 2118
AlwI GGATC 3 cut(s) 950, 1618, 1715
AlwNI CAGNNNCTG 1 cut(s) 959
Ama87I CYCGRG 1 cut(s) 65
Aor13HI TCCGGA 1 cut(s) 1267
AoxI GGCC 5 cut(s) 909, 1319, 1615, 1735, 2015
ApeKI GCWGC 5 cut(s) 139, 514, 527, 1399, 1675
ApoI RAATTY 5 cut(s) 705, 752, 2050, 2111, 2149
AseI ATTAAT 1 cut(s) 2075
AsiGI ACCGGT 1 cut(s) 1997
Asp700I GAANNNNTTC 1 cut(s) 380
AspLEI GCGC 1 cut(s) 1889
AspS9I GGNCC 5 cut(s) 203, 418, 909, 1320, 1666
AsuC2I CCSGG 3 cut(s) 350, 1258, 1932
AsuHPI GGTGA 5 cut(s) 225, 1045, 1288, 1705, 1951
AsuII TTCGAA 3 cut(s) 1687, 1761, 1791
AvaI CYCGRG 1 cut(s) 65
AvaII GGWCC 3 cut(s) 203, 418, 1666
BaeGI GKGCMC 1 cut(s) 446
BanI GGYRCC 2 cut(s) 441, 844
BanII GRGCYC 2 cut(s) 83, 1335
BauI CACGAG 2 cut(s) 1238, 1915
BbsI GAAGAC 2 cut(s) 383, 2047
Bbv12I GWGCWC 1 cut(s) 83
BbvCI CCTCAGC 1 cut(s) 541
BbvI GCAGC 5 cut(s) 126, 501, 539, 1386, 1687
BcgI CGANNNNNNTGC 6 cut(s) 1216, 1250, 1667, 1701, 1771, 1805
BciT130I CCWGG 3 cut(s) 131, 367, 2032
BciVI GTATCC 2 cut(s) 1295, 1952
BclI TGATCA 1 cut(s) 297
BcnI CCSGG 3 cut(s) 350, 1258, 1932
BcoDI GTCTC 4 cut(s) 155, 253, 1247, 2118
BfmI CTRYAG 1 cut(s) 490
BfuAI ACCTGC 1 cut(s) 640
BfuI GTATCC 2 cut(s) 1295, 1952
BglII AGATCT 1 cut(s) 389
BisI GCNGC 6 cut(s) 140, 515, 528, 1400, 1676, 1890
BlsI GCNGC 6 cut(s) 141, 516, 529, 1401, 1677, 1891
Bme1390I CCNGG 6 cut(s) 131, 350, 367, 1258, 1932, 2032
Bme18I GGWCC 3 cut(s) 203, 418, 1666
BmeT110I CYCGRG 1 cut(s) 65
BmgBI CACGTC 1 cut(s) 263
BmgT120I GGNCC 5 cut(s) 203, 418, 909, 1320, 1666
BmiI GGNNCC 3 cut(s) 443, 846, 910
BmrFI CCNGG 6 cut(s) 131, 350, 367, 1258, 1932, 2032
BmsI GCATC 7 cut(s) 343, 420, 1108, 1389, 1543, 1591, 1791
BpiI GAAGAC 2 cut(s) 383, 2047
BplI GAGNNNNNCTC 4 cut(s) 92, 124, 1893, 1925
BpmI CTGGAG 1 cut(s) 386
Bpu10I CCTNAGC 1 cut(s) 541
Bpu14I TTCGAA 3 cut(s) 1687, 1761, 1791
BpuEI CTTGAG 3 cut(s) 183, 826, 2091
BpuMI CCSGG 3 cut(s) 350, 1258, 1932
BsaAI YACGTR 1 cut(s) 1611
BsaI GGTCTC 1 cut(s) 1247
BsaJI CCNNGG 6 cut(s) 365, 414, 1323, 1703, 1864, 2031
BsaWI WCCGGW 2 cut(s) 1267, 1997
BsaXI ACNNNNNCTCC 4 cut(s) 65, 95, 1244, 1274
Bsc4I CCNNNNNNNGG 8 cut(s) 349, 372, 934, 1328, 1329, 1937, 2031, 2089
Bse118I RCCGGY 2 cut(s) 160, 1997
Bse1I ACTGG 2 cut(s) 1809, 1948
Bse3DI GCAATG 2 cut(s) 141, 2139
BseAI TCCGGA 1 cut(s) 1267
BseBI CCWGG 3 cut(s) 131, 367, 2032
BseDI CCNNGG 6 cut(s) 365, 414, 1323, 1703, 1864, 2031
BseLI CCNNNNNNNGG 8 cut(s) 349, 372, 934, 1328, 1329, 1937, 2031, 2089
BseMI GCAATG 2 cut(s) 141, 2139
BseMII CTCAG 4 cut(s) 278, 555, 1924, 2111
BseNI ACTGG 2 cut(s) 1809, 1948
BseRI GAGGAG 3 cut(s) 1466, 1496, 2105
BseSI GKGCMC 1 cut(s) 446
BseXI GCAGC 5 cut(s) 126, 501, 539, 1386, 1687
BseYI CCCAGC 2 cut(s) 445, 634
BsgI GTGCAG 3 cut(s) 439, 674, 1085
Bsh1236I CGCG 1 cut(s) 1889
Bsh1285I CGRYCG 1 cut(s) 1217
BshFI GGCC 5 cut(s) 911, 1321, 1617, 1737, 2017
BshNI GGYRCC 2 cut(s) 441, 844
BshTI ACCGGT 1 cut(s) 1997
BsiEI CGRYCG 1 cut(s) 1217
BsiHKAI GWGCWC 1 cut(s) 83
BsiHKCI CYCGRG 1 cut(s) 65
BsiSI CCGG 6 cut(s) 161, 350, 1257, 1268, 1932, 1998
BslFI GGGAC 2 cut(s) 83, 1994
BslI CCNNNNNNNGG 8 cut(s) 349, 372, 934, 1328, 1329, 1937, 2031, 2089
BsmAI GTCTC 4 cut(s) 155, 253, 1247, 2118
BsmBI CGTCTC 2 cut(s) 253, 2118
BsmFI GGGAC 2 cut(s) 83, 1994
BsmI GAATGC 5 cut(s) 986, 1368, 1438, 1588, 1696
BsnI GGCC 5 cut(s) 911, 1321, 1617, 1737, 2017
Bso31I GGTCTC 1 cut(s) 1247
BsoBI CYCGRG 1 cut(s) 65
Bsp119I TTCGAA 3 cut(s) 1687, 1761, 1791
Bsp1286I GDGCHC 3 cut(s) 83, 446, 1335
Bsp13I TCCGGA 1 cut(s) 1267
Bsp143I GATC 8 cut(s) 297, 389, 898, 955, 1214, 1523, 1623, 1707
Bsp19I CCATGG 3 cut(s) 414, 1323, 1703
BspACI CCGC 8 cut(s) 215, 236, 888, 1436, 1584, 1889, 1978, 2138
BspANI GGCC 5 cut(s) 911, 1321, 1617, 1737, 2017
BspCNI CTCAG 4 cut(s) 279, 554, 1923, 2112
BspEI TCCGGA 1 cut(s) 1267
BspFNI CGCG 1 cut(s) 1889
BspLI GGNNCC 3 cut(s) 443, 846, 910
BspMAI CTGCAG 1 cut(s) 494
BspMI ACCTGC 1 cut(s) 640
BspPI GGATC 3 cut(s) 950, 1618, 1715
BspQI GCTCTTC 1 cut(s) 783
BspT104I TTCGAA 3 cut(s) 1687, 1761, 1791
BspT107I GGYRCC 2 cut(s) 441, 844
BspTNI GGTCTC 1 cut(s) 1247
BsrBI CCGCTC 1 cut(s) 1584
BsrDI GCAATG 2 cut(s) 141, 2139
BsrFI RCCGGY 2 cut(s) 160, 1997
BsrI ACTGG 2 cut(s) 1809, 1948
BssAI RCCGGY 2 cut(s) 160, 1997
BssECI CCNNGG 6 cut(s) 365, 414, 1323, 1703, 1864, 2031
BssMI GATC 8 cut(s) 297, 389, 898, 955, 1214, 1523, 1623, 1707
BssSI CACGAG 2 cut(s) 1238, 1915
BssT1I CCWWGG 3 cut(s) 414, 1323, 1703
Bst2BI CACGAG 2 cut(s) 1238, 1915
Bst2UI CCWGG 3 cut(s) 131, 367, 2032
Bst4CI ACNGT 7 cut(s) 57, 745, 973, 1045, 1063, 1391, 2129
Bst6I CTCTTC 3 cut(s) 251, 783, 1892
BstBAI YACGTR 1 cut(s) 1611
BstBI TTCGAA 3 cut(s) 1687, 1761, 1791
BstC8I GCNNGC 5 cut(s) 162, 640, 1082, 1586, 2015
BstDEI CTNAG 4 cut(s) 287, 541, 1910, 2120
BstDSI CCRYGG 3 cut(s) 414, 1323, 1703
BstFNI CGCG 1 cut(s) 1889
BstHHI GCGC 1 cut(s) 1889
BstKTI GATC 8 cut(s) 300, 392, 901, 958, 1217, 1526, 1626, 1710
BstMAI GTCTC 4 cut(s) 155, 253, 1247, 2118
BstMBI GATC 8 cut(s) 297, 389, 898, 955, 1214, 1523, 1623, 1707
BstMCI CGRYCG 1 cut(s) 1217
BstMWI GCNNNNNNNGC 4 cut(s) 17, 1063, 1585, 1884
BstNI CCWGG 3 cut(s) 131, 367, 2032
BstNSI RCATGY 1 cut(s) 2048
BstSCI CCNGG 6 cut(s) 129, 348, 365, 1256, 1930, 2030
BstSFI CTRYAG 1 cut(s) 490
BstSLI GKGCMC 1 cut(s) 446
BstSNI TACGTA 1 cut(s) 1611
BstUI CGCG 1 cut(s) 1889
BstV1I GCAGC 5 cut(s) 126, 501, 539, 1386, 1687
BstV2I GAAGAC 2 cut(s) 383, 2047
BstX2I RGATCY 2 cut(s) 389, 955
BstYI RGATCY 2 cut(s) 389, 955
BsuI GTATCC 2 cut(s) 1295, 1952
BsuRI GGCC 5 cut(s) 911, 1321, 1617, 1737, 2017
BtgI CCRYGG 3 cut(s) 414, 1323, 1703
BtgZI GCGATG 3 cut(s) 35, 1241, 1262
BtrI CACGTC 1 cut(s) 263
BtsI GCAGTG 1 cut(s) 1179
BtsIMutI CAGTG 2 cut(s) 1068, 1179
BveI ACCTGC 1 cut(s) 640
Cac8I GCNNGC 5 cut(s) 162, 640, 1082, 1586, 2015
CaiI CAGNNNCTG 1 cut(s) 959
CfoI GCGC 1 cut(s) 1889
Cfr10I RCCGGY 2 cut(s) 160, 1997
Cfr13I GGNCC 5 cut(s) 203, 418, 909, 1320, 1666
CseI GACGC 1 cut(s) 131
Csp6I GTAC 2 cut(s) 1041, 1608
CspAI ACCGGT 1 cut(s) 1997
CviQI GTAC 2 cut(s) 1041, 1608
DdeI CTNAG 4 cut(s) 287, 541, 1910, 2120
DpnI GATC 8 cut(s) 299, 391, 900, 957, 1216, 1525, 1625, 1709
DpnII GATC 8 cut(s) 297, 389, 898, 955, 1214, 1523, 1623, 1707
DraIII CACNNNGTG 2 cut(s) 934, 1564
Eam1104I CTCTTC 3 cut(s) 251, 783, 1892
EarI CTCTTC 3 cut(s) 251, 783, 1892
EciI GGCGGA 1 cut(s) 2153
Ecl136II GAGCTC 1 cut(s) 81
Eco105I TACGTA 1 cut(s) 1611
Eco130I CCWWGG 3 cut(s) 414, 1323, 1703
Eco147I AGGCCT 1 cut(s) 1737
Eco24I GRGCYC 2 cut(s) 83, 1335
Eco31I GGTCTC 1 cut(s) 1247
Eco47I GGWCC 3 cut(s) 203, 418, 1666
Eco53kI GAGCTC 1 cut(s) 81
Eco57I CTGAAG 1 cut(s) 1106
Eco88I CYCGRG 1 cut(s) 65
EcoICRI GAGCTC 1 cut(s) 81
EcoRI GAATTC 1 cut(s) 752
EcoRII CCWGG 3 cut(s) 129, 365, 2030
EcoT14I CCWWGG 3 cut(s) 414, 1323, 1703
EcoT22I ATGCAT 1 cut(s) 988
EcoT38I GRGCYC 2 cut(s) 83, 1335
ErhI CCWWGG 3 cut(s) 414, 1323, 1703
Esp3I CGTCTC 2 cut(s) 253, 2118
FaqI GGGAC 2 cut(s) 83, 1994
FauI CCCGC 2 cut(s) 1577, 1971
FbaI TGATCA 1 cut(s) 297
Fnu4HI GCNGC 6 cut(s) 140, 515, 528, 1400, 1676, 1890
FriOI GRGCYC 2 cut(s) 83, 1335
Fsp4HI GCNGC 6 cut(s) 140, 515, 528, 1400, 1676, 1890
GlaI GCGC 1 cut(s) 1888
GluI GCNGC 6 cut(s) 140, 515, 528, 1400, 1676, 1890
GsaI CCCAGC 2 cut(s) 449, 638
GsuI CTGGAG 1 cut(s) 386
HaeIII GGCC 5 cut(s) 911, 1321, 1617, 1737, 2017
HapII CCGG 6 cut(s) 161, 350, 1257, 1268, 1932, 1998
HgaI GACGC 1 cut(s) 131
HhaI GCGC 1 cut(s) 1889
Hin6I GCGC 1 cut(s) 1887
HinP1I GCGC 1 cut(s) 1887
HindIII AAGCTT 1 cut(s) 281
HpaII CCGG 6 cut(s) 161, 350, 1257, 1268, 1932, 1998
HphI GGTGA 5 cut(s) 225, 1045, 1288, 1705, 1951
Hpy188III TCNNGA 9 cut(s) 100, 871, 902, 1268, 1373, 1627, 1838, 2005, 2108
Hpy99I CGWCG 2 cut(s) 77, 147
HpyCH4III ACNGT 7 cut(s) 57, 745, 973, 1045, 1063, 1391, 2129
HpyCH4IV ACGT 3 cut(s) 262, 380, 1610
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 1063, 1585, 1884
HpyF3I CTNAG 4 cut(s) 287, 541, 1910, 2120
HpySE526I ACGT 3 cut(s) 262, 380, 1610
HspAI GCGC 1 cut(s) 1887
Kpn2I TCCGGA 1 cut(s) 1267
KroI GCCGGC 1 cut(s) 160
KroNI GCCGGC 1 cut(s) 162
Ksp22I TGATCA 1 cut(s) 297
Kzo9I GATC 8 cut(s) 297, 389, 898, 955, 1214, 1523, 1623, 1707
LguI GCTCTTC 1 cut(s) 783
LmnI GCTCC 1 cut(s) 86
Lsp1109I GCAGC 5 cut(s) 126, 501, 539, 1386, 1687
LweI GCATC 7 cut(s) 343, 420, 1108, 1389, 1543, 1591, 1791
MaeII ACGT 3 cut(s) 262, 380, 1610
MaeIII GTNAC 2 cut(s) 881, 1711
MalI GATC 8 cut(s) 299, 391, 900, 957, 1216, 1525, 1625, 1709
MbiI CCGCTC 1 cut(s) 1584
MboI GATC 8 cut(s) 297, 389, 898, 955, 1214, 1523, 1623, 1707
MfeI CAATTG 1 cut(s) 1075
MflI RGATCY 2 cut(s) 389, 955
MhlI GDGCHC 3 cut(s) 83, 446, 1335
MlyI GAGTC 3 cut(s) 157, 1639, 1927
MmeI TCCRAC 3 cut(s) 125, 1174, 1499
Mph1103I ATGCAT 1 cut(s) 988
MroI TCCGGA 1 cut(s) 1267
MroNI GCCGGC 1 cut(s) 160
MroXI GAANNNNTTC 1 cut(s) 380
MseI TTAA 6 cut(s) 191, 276, 923, 1719, 2054, 2075
MspA1I CMGCKG 1 cut(s) 1978
MspI CCGG 6 cut(s) 161, 350, 1257, 1268, 1932, 1998
MspR9I CCNGG 6 cut(s) 131, 350, 367, 1258, 1932, 2032
MunI CAATTG 1 cut(s) 1075
Mva1269I GAATGC 5 cut(s) 986, 1368, 1438, 1588, 1696
MvaI CCWGG 3 cut(s) 131, 367, 2032
MvnI CGCG 1 cut(s) 1889
MwoI GCNNNNNNNGC 4 cut(s) 17, 1063, 1585, 1884
NaeI GCCGGC 1 cut(s) 162
NciI CCSGG 3 cut(s) 350, 1258, 1932
NcoI CCATGG 3 cut(s) 414, 1323, 1703
NdeII GATC 8 cut(s) 297, 389, 898, 955, 1214, 1523, 1623, 1707
NgoMIV GCCGGC 1 cut(s) 160
NlaIV GGNNCC 3 cut(s) 443, 846, 910
NmeAIII GCCGAG 1 cut(s) 645
NmuCI GTSAC 1 cut(s) 1711
NsiI ATGCAT 1 cut(s) 988
NspI RCATGY 1 cut(s) 2048
NspV TTCGAA 3 cut(s) 1687, 1761, 1791
PaqCI CACCTGC 1 cut(s) 640
PceI AGGCCT 1 cut(s) 1737
PciI ACATGT 1 cut(s) 2044
PciSI GCTCTTC 1 cut(s) 783
PcsI WCGNNNNNNNCGW 3 cut(s) 72, 96, 1223
PctI GAATGC 5 cut(s) 986, 1368, 1438, 1588, 1696
PdiI GCCGGC 1 cut(s) 162
PdmI GAANNNNTTC 1 cut(s) 380
PfeI GAWTC 8 cut(s) 672, 851, 1264, 1426, 1729, 1846, 2008, 2141
PflMI CCANNNNNTGG 3 cut(s) 372, 934, 2031
PfoI TCCNGGA 1 cut(s) 348
PinAI ACCGGT 1 cut(s) 1997
PkrI GCNGC 6 cut(s) 141, 516, 529, 1401, 1677, 1891
Ple19I CGATCG 1 cut(s) 1217
PleI GAGTC 3 cut(s) 156, 1638, 1926
PpsI GAGTC 3 cut(s) 156, 1638, 1926
Ppu21I YACGTR 1 cut(s) 1611
PscI ACATGT 1 cut(s) 2044
PshBI ATTAAT 1 cut(s) 2075
Psp124BI GAGCTC 1 cut(s) 83
Psp6I CCWGG 3 cut(s) 129, 365, 2030
PspFI CCCAGC 2 cut(s) 445, 634
PspGI CCWGG 3 cut(s) 129, 365, 2030
PspN4I GGNNCC 3 cut(s) 443, 846, 910
PspPI GGNCC 5 cut(s) 203, 418, 909, 1320, 1666
PstI CTGCAG 1 cut(s) 494
PstNI CAGNNNCTG 1 cut(s) 959
PsuI RGATCY 2 cut(s) 389, 955
PvuI CGATCG 1 cut(s) 1217
RsaI GTAC 2 cut(s) 1042, 1609
RsaNI GTAC 2 cut(s) 1041, 1608
SacI GAGCTC 1 cut(s) 83
SapI GCTCTTC 1 cut(s) 783
SaqAI TTAA 6 cut(s) 191, 276, 923, 1719, 2054, 2075
SatI GCNGC 6 cut(s) 140, 515, 528, 1400, 1676, 1890
Sau3AI GATC 8 cut(s) 297, 389, 898, 955, 1214, 1523, 1623, 1707
Sau96I GGNCC 5 cut(s) 203, 418, 909, 1320, 1666
SchI GAGTC 3 cut(s) 157, 1639, 1927
ScrFI CCNGG 6 cut(s) 131, 350, 367, 1258, 1932, 2032
SduI GDGCHC 3 cut(s) 83, 446, 1335
SfaNI GCATC 7 cut(s) 343, 420, 1108, 1389, 1543, 1591, 1791
SfcI CTRYAG 1 cut(s) 490
SfuI TTCGAA 3 cut(s) 1687, 1761, 1791
SgrAI CRCCGGYG 1 cut(s) 1997
SinI GGWCC 3 cut(s) 203, 418, 1666
SmlI CTYRAG 3 cut(s) 198, 805, 2106
SmoI CTYRAG 3 cut(s) 198, 805, 2106
SnaBI TACGTA 1 cut(s) 1611
SseBI AGGCCT 1 cut(s) 1737
SsiI CCGC 8 cut(s) 215, 236, 888, 1436, 1584, 1889, 1978, 2138
SstI GAGCTC 1 cut(s) 83
StuI AGGCCT 1 cut(s) 1737
StyD4I CCNGG 6 cut(s) 129, 348, 365, 1256, 1930, 2030
StyI CCWWGG 3 cut(s) 414, 1323, 1703
TaaI ACNGT 7 cut(s) 57, 745, 973, 1045, 1063, 1391, 2129
TaiI ACGT 3 cut(s) 265, 383, 1613
TaqI TCGA 8 cut(s) 90, 99, 114, 1213, 1687, 1761, 1791, 1849
TauI GCSGC 1 cut(s) 1892
TfiI GAWTC 8 cut(s) 672, 851, 1264, 1426, 1729, 1846, 2008, 2141
Tru1I TTAA 6 cut(s) 191, 276, 923, 1719, 2054, 2075
Tru9I TTAA 6 cut(s) 191, 276, 923, 1719, 2054, 2075
TscAI CASTG 2 cut(s) 1068, 1186
TseFI GTSAC 1 cut(s) 1711
TseI GCWGC 5 cut(s) 139, 514, 527, 1399, 1675
Tsp45I GTSAC 1 cut(s) 1711
TspGWI ACGGA 1 cut(s) 1658
TspRI CASTG 2 cut(s) 1068, 1186
Van91I CCANNNNNTGG 3 cut(s) 372, 934, 2031
VpaK11BI GGWCC 3 cut(s) 203, 418, 1666
VspI ATTAAT 1 cut(s) 2075
XapI RAATTY 5 cut(s) 705, 752, 2050, 2111, 2149
XceI RCATGY 1 cut(s) 2048
XmnI GAANNNNTTC 1 cut(s) 380
Zsp2I ATGCAT 1 cut(s) 988
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.