pycom04g19330

SEC-C motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0011179
Physical Location & Seq
Forward (+)
21080061 .. 21080499
439 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g19330.1

Sequence Viewer

Length: 384 bp
ATGCATCGCTCTTCACGGATCATAAGCACCGCATTGTGCAACAAAAAATCCAACTTGCCGTCATCGTTCTCCGGCTACCATTTCGGTGATCGCAGCCTAGCTCTGTCGTTCCGTTCGATATCCTCCACGATGCAGCTGGATGACTCATGGATGAACAAGTTCAAAGGGGTCTTCACCGGCAACAAGACCTCTCCGGAAGAAGCAAGATCAAAGGGGAATTCACTGATGAAGAATGCTACAAGAATCGGAGCGTTTAAGAAGTACATTGCCGGGAGAAGCAGTGAAGCTACTTTTGCCGATGCTTTTGACAAGCAGGAAGCGATATTACGATATCTCGGAGGATTTGATTCAACTGGAGAGGTTGGTTTTACCCTTTTAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SEC-C

Protein Analysis

128

Amino Acids

13.99

Weight (kDa)

9.81

Isoelectric Point (pI)

60.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011179)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04950
fragaria_vesca FvH4_6g03930
malus_domestica MD12G1234200.v1.1
prunus_persica Prupe.6G337300_v2.0.a1
pyrus_communis pycom04g19330 pycom12g21660
rosa_chinensis RchiOBHm_Chr3g0452481 RchiOBHm_Chr3g0452521
rosa_laevigata RLG00000025595 RLG00000025598
rosa_multiflora Rmu_co8297771.1_g000001 Rmu_sc0011680.1_g000004
rosa_roxburghii Rroxscaffold_6G00429510
rosa_rugosa Rorug02G0641200
rosa_samantha Rh3AG043000 Rh3BG044700 Rh3CG043300 Rh3DG044100
rosa_wichuraiana Rw3G003330 Rw3G003360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 193
AciI CCGC 1 cut(s) 30
AclWI GGATC 1 cut(s) 26
AcsI RAATTY 1 cut(s) 217
AfaI GTAC 1 cut(s) 263
AgsI TTSAA 2 cut(s) 163, 351
AluBI AGCT 3 cut(s) 101, 136, 287
AluI AGCT 3 cut(s) 101, 136, 287
AlwI GGATC 1 cut(s) 26
Aor13HI TCCGGA 1 cut(s) 193
ApeKI GCWGC 2 cut(s) 93, 133
ApoI RAATTY 1 cut(s) 217
Asp700I GAANNNNTTC 1 cut(s) 158
AsuC2I CCSGG 1 cut(s) 271
AsuHPI GGTGA 2 cut(s) 98, 166
BarI GAAGNNNNNNTAC 2 cut(s) 309, 341
BbsI GAAGAC 1 cut(s) 163
BbvI GCAGC 2 cut(s) 105, 145
BceAI ACGGC 1 cut(s) 43
BcnI CCSGG 1 cut(s) 271
BfaI CTAG 1 cut(s) 98
BisI GCNGC 2 cut(s) 94, 134
BlsI GCNGC 2 cut(s) 95, 135
Bme1390I CCNGG 1 cut(s) 271
BmrFI CCNGG 1 cut(s) 271
BmsI GCATC 3 cut(s) 13, 120, 289
BpiI GAAGAC 1 cut(s) 163
BpmI CTGGAG 1 cut(s) 375
BpuMI CCSGG 1 cut(s) 271
BsaWI WCCGGW 1 cut(s) 193
BsaXI ACNNNNNCTCC 2 cut(s) 265, 295
Bse118I RCCGGY 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 358
Bse3DI GCAATG 1 cut(s) 264
BseAI TCCGGA 1 cut(s) 193
BseGI GGATG 2 cut(s) 145, 156
BseMI GCAATG 1 cut(s) 264
BseNI ACTGG 1 cut(s) 358
BseXI GCAGC 2 cut(s) 105, 145
BsiSI CCGG 4 cut(s) 72, 177, 194, 270
BsmI GAATGC 1 cut(s) 238
Bsp13I TCCGGA 1 cut(s) 193
Bsp143I GATC 3 cut(s) 18, 88, 206
BspACI CCGC 1 cut(s) 30
BspEI TCCGGA 1 cut(s) 193
BspPI GGATC 1 cut(s) 26
BspQI GCTCTTC 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 264
BsrFI RCCGGY 1 cut(s) 176
BsrI ACTGG 1 cut(s) 358
BssAI RCCGGY 1 cut(s) 176
BssMI GATC 3 cut(s) 18, 88, 206
Bst6I CTCTTC 1 cut(s) 16
BstF5I GGATG 2 cut(s) 145, 156
BstKTI GATC 3 cut(s) 21, 91, 209
BstMBI GATC 3 cut(s) 18, 88, 206
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 269
BstV1I GCAGC 2 cut(s) 105, 145
BstV2I GAAGAC 1 cut(s) 163
BtsCI GGATG 2 cut(s) 145, 156
BtsI GCAGTG 1 cut(s) 286
BtsIMutI CAGTG 2 cut(s) 221, 286
Cfr10I RCCGGY 1 cut(s) 176
Csp6I GTAC 1 cut(s) 262
CviAII CATG 1 cut(s) 147
CviJI RGCY 5 cut(s) 75, 96, 101, 136, 287
CviKI_1 RGCY 5 cut(s) 75, 96, 101, 136, 287
CviQI GTAC 1 cut(s) 262
DpnI GATC 3 cut(s) 20, 90, 208
DpnII GATC 3 cut(s) 18, 88, 206
DraI TTTAAA 1 cut(s) 378
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
Eco32I GATATC 2 cut(s) 120, 332
EcoRI GAATTC 1 cut(s) 217
EcoRV GATATC 2 cut(s) 120, 332
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 150
FaiI YATR 2 cut(s) 23, 148
FatI CATG 1 cut(s) 146
Fnu4HI GCNGC 2 cut(s) 94, 134
FokI GGATG 2 cut(s) 152, 163
Fsp4HI GCNGC 2 cut(s) 94, 134
FspBI CTAG 1 cut(s) 98
GluI GCNGC 2 cut(s) 94, 134
GsuI CTGGAG 1 cut(s) 375
HapII CCGG 4 cut(s) 72, 177, 194, 270
Hin1II CATG 1 cut(s) 150
HinfI GANTC 3 cut(s) 143, 243, 347
HpaII CCGG 4 cut(s) 72, 177, 194, 270
HphI GGTGA 2 cut(s) 98, 166
Hpy188I TCNGA 2 cut(s) 248, 338
Hpy188III TCNNGA 1 cut(s) 194
HpyCH4V TGCA 3 cut(s) 4, 39, 133
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
Hsp92II CATG 1 cut(s) 150
Kpn2I TCCGGA 1 cut(s) 193
Kzo9I GATC 3 cut(s) 18, 88, 206
LguI GCTCTTC 1 cut(s) 16
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 7 cut(s) 85, 122, 190, 207, 283, 299, 339
Lsp1109I GCAGC 2 cut(s) 105, 145
LweI GCATC 3 cut(s) 13, 120, 289
MaeI CTAG 1 cut(s) 98
MalI GATC 3 cut(s) 20, 90, 208
MboI GATC 3 cut(s) 18, 88, 206
MboII GAAGA 4 cut(s) 3, 163, 209, 241
MluCI AATT 2 cut(s) 217, 379
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 4 cut(s) 133, 199, 332, 352
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 193
MroXI GAANNNNTTC 1 cut(s) 158
MseI TTAA 2 cut(s) 255, 377
MslI CAYNNNNRTG 1 cut(s) 84
MspA1I CMGCKG 1 cut(s) 136
MspI CCGG 4 cut(s) 72, 177, 194, 270
MspR9I CCNGG 1 cut(s) 271
Mva1269I GAATGC 1 cut(s) 238
MwoI GCNNNNNNNGC 1 cut(s) 293
NciI CCSGG 1 cut(s) 271
NdeII GATC 3 cut(s) 18, 88, 206
NlaIII CATG 1 cut(s) 150
NsiI ATGCAT 1 cut(s) 6
PciSI GCTCTTC 1 cut(s) 16
PcsI WCGNNNNNNNCGW 1 cut(s) 113
PctI GAATGC 1 cut(s) 238
PdmI GAANNNNTTC 1 cut(s) 158
PfeI GAWTC 2 cut(s) 243, 347
PkrI GCNGC 2 cut(s) 95, 135
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
PvuII CAGCTG 1 cut(s) 136
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
RseI CAYNNNNRTG 1 cut(s) 84
SapI GCTCTTC 1 cut(s) 16
SaqAI TTAA 2 cut(s) 255, 377
SatI GCNGC 2 cut(s) 94, 134
Sau3AI GATC 3 cut(s) 18, 88, 206
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 271
SetI ASST 5 cut(s) 103, 138, 191, 289, 363
SfaNI GCATC 3 cut(s) 13, 120, 289
SmiMI CAYNNNNRTG 1 cut(s) 84
Sse9I AATT 2 cut(s) 217, 379
SsiI CCGC 1 cut(s) 30
SspMI CTAG 1 cut(s) 98
StyD4I CCNGG 1 cut(s) 269
TaqI TCGA 1 cut(s) 116
TasI AATT 2 cut(s) 217, 379
TatI WGTACW 1 cut(s) 261
TfiI GAWTC 2 cut(s) 243, 347
Tru1I TTAA 2 cut(s) 255, 377
Tru9I TTAA 2 cut(s) 255, 377
TscAI CASTG 2 cut(s) 228, 286
TseI GCWGC 2 cut(s) 93, 133
TspDTI ATGAA 2 cut(s) 167, 242
TspGWI ACGGA 2 cut(s) 31, 101
TspRI CASTG 2 cut(s) 228, 286
XapI RAATTY 1 cut(s) 217
XcmI CCANNNNNNNNNTGG 1 cut(s) 133
XmnI GAANNNNTTC 1 cut(s) 158
XspI CTAG 1 cut(s) 98
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.