RLG00000025595

SEC-C motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0011179
Physical Location & Seq
Reverse (-)
46984882 .. 46987579
2698 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025595

Sequence Viewer

Length: 807 bp
ATGCATTCTTCACGAATCCTAAGCACAACAATGAGCAAGAAAAGCTCGAGTTTCCTGTCCTCTGTATCCGTCTATTCTCACAGTGACAGTAACCACACTCCATCACTGCACCGCTCTATCTTCTCCACGACGCAACTAGACAACTCATGGGTAAACAAGATCAAGGGTGTCTTCACCGGCAATAAGACATCCCCAGATGAACCTAAGCTCAGCTCCGACTCATTCACCCTGCTCCGATTTGCGGATGAGTTGAAGACTGCTAGAAGAGTAGGGGCATTCAAACAATACATTGTTGGGAGAAGCAGTGAAGCGACTTTTGCCGATGCATTCGAGAAGCAGGAATTGATAATACGATATCTCAGAGGATTTGATTCTACTGGAGAGTTTCTTGATTATGGCTTTAGGTCTTCTGTTCTGTGGAATCTCCAAATCACGCAAAAACAAGAAGCAGCAAAGTGTTGTAAATGCACAATAGCTGATGTTGAGAATGCACTTGCAAAGTTCACCTGGGCCAGAGAAGCACACAAGAAGATGGAAAAGTTGAAAGCAGAAGGGAAACCAATTCCAACAAACATTGGCGAGGTGCAAAAGTTGATGGGTTCAACCCCATTTGACCTTGCTCAGTCTAATTTGGCTAAGAGTGGACAAATTAGTAGGAGTGCACTTTGTCCGTGTGGTTCCAAGAAACGATACAAGCGGTGCTGTGGAAAGGTTAAGTGCTCGCAGAATAAGAGGGAAGGAAAATCTACTGCAGTCCAGAGACACCTCAAGCTCGAAGAAAGAATTTTCAGTTTTTGGATTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SEC-C

Protein Analysis

269

Amino Acids

30.18

Weight (kDa)

9.71

Isoelectric Point (pI)

47.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011179)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04950
fragaria_vesca FvH4_6g03930
malus_domestica MD12G1234200.v1.1
prunus_persica Prupe.6G337300_v2.0.a1
pyrus_communis pycom04g19330 pycom12g21660
rosa_chinensis RchiOBHm_Chr3g0452481 RchiOBHm_Chr3g0452521
rosa_laevigata RLG00000025595 RLG00000025598
rosa_multiflora Rmu_co8297771.1_g000001 Rmu_sc0011680.1_g000004
rosa_roxburghii Rroxscaffold_6G00429510
rosa_rugosa Rorug02G0641200
rosa_samantha Rh3AG043000 Rh3BG044700 Rh3CG043300 Rh3DG044100
rosa_wichuraiana Rw3G003330 Rw3G003360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 114
AciI CCGC 3 cut(s) 112, 242, 697
AcsI RAATTY 1 cut(s) 783
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 4 cut(s) 253, 280, 544, 603
AjnI CCWGG 1 cut(s) 506
AluBI AGCT 5 cut(s) 45, 208, 213, 476, 772
AluI AGCT 5 cut(s) 45, 208, 213, 476, 772
Alw21I GWGCWC 2 cut(s) 664, 722
Alw26I GTCTC 1 cut(s) 754
Alw44I GTGCAC 1 cut(s) 660
Ama87I CYCGRG 1 cut(s) 46
AoxI GGCC 1 cut(s) 510
ApaLI GTGCAC 1 cut(s) 660
ApeKI GCWGC 1 cut(s) 449
ApoI RAATTY 1 cut(s) 783
AspS9I GGNCC 1 cut(s) 510
AsuHPI GGTGA 3 cut(s) 166, 217, 496
AvaI CYCGRG 1 cut(s) 46
BaeGI GKGCMC 1 cut(s) 664
BbsI GAAGAC 3 cut(s) 163, 260, 399
Bbv12I GWGCWC 2 cut(s) 664, 722
BbvI GCAGC 1 cut(s) 461
BccI CCATC 3 cut(s) 109, 526, 589
BciT130I CCWGG 1 cut(s) 508
BciVI GTATCC 1 cut(s) 76
BcoDI GTCTC 1 cut(s) 754
BfaI CTAG 2 cut(s) 137, 261
BfmI CTRYAG 1 cut(s) 750
BfuI GTATCC 1 cut(s) 76
BisI GCNGC 1 cut(s) 450
BlpI GCTNAGC 1 cut(s) 209
BlsI GCNGC 1 cut(s) 451
Bme1390I CCNGG 1 cut(s) 508
BmeT110I CYCGRG 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 510
BmiI GGNNCC 1 cut(s) 679
BmrFI CCNGG 1 cut(s) 508
BmsI GCATC 1 cut(s) 313
BpiI GAAGAC 3 cut(s) 163, 260, 399
BpmI CTGGAG 1 cut(s) 399
Bpu10I CCTNAGC 2 cut(s) 20, 204
Bpu1102I GCTNAGC 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 752
BsaJI CCNNGG 1 cut(s) 507
BsaXI ACNNNNNCTCC 2 cut(s) 289, 319
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse118I RCCGGY 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 382
BseBI CCWGG 1 cut(s) 508
BseDI CCNNGG 1 cut(s) 507
BseGI GGATG 2 cut(s) 188, 250
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMII CTCAG 3 cut(s) 223, 373, 635
BseNI ACTGG 1 cut(s) 382
BseSI GKGCMC 1 cut(s) 664
BseXI GCAGC 1 cut(s) 461
BsgI GTGCAG 1 cut(s) 92
BshFI GGCC 1 cut(s) 512
BsiHKAI GWGCWC 2 cut(s) 664, 722
BsiHKCI CYCGRG 1 cut(s) 46
BsiSI CCGG 1 cut(s) 177
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 1 cut(s) 754
BsmI GAATGC 4 cut(s) 4, 275, 326, 493
BsnI GGCC 1 cut(s) 512
BsoBI CYCGRG 1 cut(s) 46
Bsp1286I GDGCHC 2 cut(s) 664, 722
Bsp143I GATC 1 cut(s) 159
Bsp1720I GCTNAGC 1 cut(s) 209
BspACI CCGC 3 cut(s) 112, 242, 697
BspANI GGCC 1 cut(s) 512
BspCNI CTCAG 3 cut(s) 222, 372, 634
BspLI GGNNCC 1 cut(s) 679
BspMAI CTGCAG 1 cut(s) 754
BsrBI CCGCTC 1 cut(s) 114
BsrFI RCCGGY 1 cut(s) 176
BsrI ACTGG 1 cut(s) 382
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 507
BssMI GATC 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 508
Bst4CI ACNGT 2 cut(s) 83, 89
Bst6I CTCTTC 1 cut(s) 259
BstC8I GCNNGC 1 cut(s) 722
BstDEI CTNAG 6 cut(s) 20, 204, 209, 359, 621, 636
BstF5I GGATG 2 cut(s) 188, 250
BstKTI GATC 1 cut(s) 162
BstMAI GTCTC 1 cut(s) 754
BstMBI GATC 1 cut(s) 159
BstMWI GCNNNNNNNGC 3 cut(s) 42, 317, 518
BstNI CCWGG 1 cut(s) 508
BstSCI CCNGG 1 cut(s) 506
BstSFI CTRYAG 1 cut(s) 750
BstSLI GKGCMC 1 cut(s) 664
BstV1I GCAGC 1 cut(s) 461
BstV2I GAAGAC 3 cut(s) 163, 260, 399
BsuI GTATCC 1 cut(s) 76
BsuRI GGCC 1 cut(s) 512
BtsCI GGATG 2 cut(s) 188, 250
BtsI GCAGTG 2 cut(s) 104, 310
BtsIMutI CAGTG 3 cut(s) 88, 104, 310
Cac8I GCNNGC 1 cut(s) 722
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 510
CseI GACGC 1 cut(s) 139
CviAII CATG 1 cut(s) 147
CviJI RGCY 8 cut(s) 45, 208, 213, 399, 476, 512, 635, 772
CviKI_1 RGCY 8 cut(s) 45, 208, 213, 399, 476, 512, 635, 772
DdeI CTNAG 6 cut(s) 20, 204, 209, 359, 621, 636
DpnI GATC 1 cut(s) 161
DpnII GATC 1 cut(s) 159
Eam1104I CTCTTC 1 cut(s) 259
EarI CTCTTC 1 cut(s) 259
Eco32I GATATC 1 cut(s) 356
Eco88I CYCGRG 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 506
EcoRV GATATC 1 cut(s) 356
EcoT22I ATGCAT 2 cut(s) 6, 328
FaeI CATG 1 cut(s) 150
FaiI YATR 2 cut(s) 148, 396
FalI AAGNNNNNCTT 2 cut(s) 155, 187
FatI CATG 1 cut(s) 146
Fnu4HI GCNGC 1 cut(s) 450
FokI GGATG 2 cut(s) 175, 257
Fsp4HI GCNGC 1 cut(s) 450
FspBI CTAG 2 cut(s) 137, 261
GluI GCNGC 1 cut(s) 450
GsuI CTGGAG 1 cut(s) 399
HaeIII GGCC 1 cut(s) 512
HapII CCGG 1 cut(s) 177
HgaI GACGC 1 cut(s) 139
Hin1II CATG 1 cut(s) 150
HinfI GANTC 4 cut(s) 15, 218, 371, 421
HpaII CCGG 1 cut(s) 177
HphI GGTGA 3 cut(s) 166, 217, 496
Hpy166II GTNNAC 4 cut(s) 154, 504, 644, 662
Hpy188I TCNGA 3 cut(s) 217, 236, 362
Hpy188III TCNNGA 4 cut(s) 12, 331, 389, 757
Hpy8I GTNNAC 4 cut(s) 154, 504, 644, 662
Hpy99I CGWCG 1 cut(s) 133
HpyAV CCTTC 2 cut(s) 545, 731
HpyCH4III ACNGT 2 cut(s) 83, 89
HpyCH4V TGCA 9 cut(s) 4, 109, 326, 468, 491, 497, 586, 662, 752
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 317, 518
HpyF3I CTNAG 6 cut(s) 20, 204, 209, 359, 621, 636
Hsp92II CATG 1 cut(s) 150
Kzo9I GATC 1 cut(s) 159
LmnI GCTCC 2 cut(s) 218, 237
Lsp1109I GCAGC 1 cut(s) 461
LweI GCATC 1 cut(s) 313
MaeI CTAG 2 cut(s) 137, 261
MaeIII GTNAC 2 cut(s) 83, 89
MalI GATC 1 cut(s) 161
MbiI CCGCTC 1 cut(s) 114
MboI GATC 1 cut(s) 159
MboII GAAGA 7 cut(s) 112, 163, 265, 276, 399, 541, 788
MhlI GDGCHC 2 cut(s) 664, 722
MluCI AATT 5 cut(s) 341, 561, 628, 648, 783
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 2 cut(s) 240, 590
MnlI CCTC 5 cut(s) 70, 356, 574, 726, 776
Mph1103I ATGCAT 2 cut(s) 6, 328
MseI TTAA 1 cut(s) 714
MslI CAYNNNNRTG 1 cut(s) 29
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 1 cut(s) 508
Mva1269I GAATGC 4 cut(s) 4, 275, 326, 493
MvaI CCWGG 1 cut(s) 508
MwoI GCNNNNNNNGC 3 cut(s) 42, 317, 518
NdeII GATC 1 cut(s) 159
NlaIII CATG 1 cut(s) 150
NlaIV GGNNCC 1 cut(s) 679
NmuCI GTSAC 1 cut(s) 83
NsiI ATGCAT 2 cut(s) 6, 328
PaeR7I CTCGAG 1 cut(s) 46
PctI GAATGC 4 cut(s) 4, 275, 326, 493
PfeI GAWTC 3 cut(s) 15, 371, 421
PkrI GCNGC 1 cut(s) 451
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
Psp6I CCWGG 1 cut(s) 506
PspGI CCWGG 1 cut(s) 506
PspN4I GGNNCC 1 cut(s) 679
PspPI GGNCC 1 cut(s) 510
PspXI VCTCGAGB 1 cut(s) 46
PstI CTGCAG 1 cut(s) 754
RseI CAYNNNNRTG 1 cut(s) 29
SaqAI TTAA 1 cut(s) 714
SatI GCNGC 1 cut(s) 450
Sau3AI GATC 1 cut(s) 159
Sau96I GGNCC 1 cut(s) 510
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 508
SduI GDGCHC 2 cut(s) 664, 722
SfaNI GCATC 1 cut(s) 313
SfcI CTRYAG 1 cut(s) 750
Sfr274I CTCGAG 1 cut(s) 46
SlaI CTCGAG 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 29
SmlI CTYRAG 2 cut(s) 46, 767
SmoI CTYRAG 2 cut(s) 46, 767
Sse9I AATT 5 cut(s) 341, 561, 628, 648, 783
SsiI CCGC 3 cut(s) 112, 242, 697
SspMI CTAG 2 cut(s) 137, 261
StyD4I CCNGG 1 cut(s) 506
TaaI ACNGT 2 cut(s) 83, 89
TaqI TCGA 3 cut(s) 47, 330, 774
TasI AATT 5 cut(s) 341, 561, 628, 648, 783
TfiI GAWTC 3 cut(s) 15, 371, 421
Tru1I TTAA 1 cut(s) 714
Tru9I TTAA 1 cut(s) 714
TscAI CASTG 3 cut(s) 88, 111, 310
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 1 cut(s) 449
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 1 cut(s) 213
TspGWI ACGGA 2 cut(s) 58, 660
TspRI CASTG 3 cut(s) 88, 111, 310
VneI GTGCAC 1 cut(s) 660
XapI RAATTY 1 cut(s) 783
XhoI CTCGAG 1 cut(s) 46
XspI CTAG 2 cut(s) 137, 261
Zsp2I ATGCAT 2 cut(s) 6, 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.