SEC-C motif
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G04950 |
| fragaria_vesca | FvH4_6g03930 |
| malus_domestica | MD12G1234200.v1.1 |
| prunus_persica | Prupe.6G337300_v2.0.a1 |
| pyrus_communis | pycom04g19330 pycom12g21660 |
| rosa_chinensis | RchiOBHm_Chr3g0452481 RchiOBHm_Chr3g0452521 |
| rosa_laevigata | RLG00000025595 RLG00000025598 |
| rosa_multiflora | Rmu_co8297771.1_g000001 Rmu_sc0011680.1_g000004 |
| rosa_roxburghii | Rroxscaffold_6G00429510 |
| rosa_rugosa | Rorug02G0641200 |
| rosa_samantha | Rh3AG043000 Rh3BG044700 Rh3CG043300 Rh3DG044100 |
| rosa_wichuraiana | Rw3G003330 Rw3G003360 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 189 |
| AciI | CCGC | 2 cut(s) | 187, 317 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 316 |
| AgsI | TTSAA | 2 cut(s) | 328, 355 |
| AjnI | CCWGG | 1 cut(s) | 12 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 64, 96 |
| AluBI | AGCT | 3 cut(s) | 120, 283, 288 |
| AluI | AGCT | 3 cut(s) | 120, 283, 288 |
| Alw26I | GTCTC | 1 cut(s) | 72 |
| Ama87I | CYCGRG | 1 cut(s) | 121 |
| AsuHPI | GGTGA | 3 cut(s) | 238, 241, 292 |
| AvaI | CYCGRG | 1 cut(s) | 121 |
| BbsI | GAAGAC | 2 cut(s) | 238, 335 |
| BccI | CCATC | 1 cut(s) | 184 |
| BciT130I | CCWGG | 1 cut(s) | 14 |
| BcoDI | GTCTC | 1 cut(s) | 72 |
| BfaI | CTAG | 2 cut(s) | 212, 336 |
| BlpI | GCTNAGC | 1 cut(s) | 284 |
| Bme1390I | CCNGG | 1 cut(s) | 14 |
| BmeT110I | CYCGRG | 1 cut(s) | 121 |
| BmrFI | CCNGG | 1 cut(s) | 14 |
| BpiI | GAAGAC | 2 cut(s) | 238, 335 |
| Bpu10I | CCTNAGC | 1 cut(s) | 95 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 284 |
| BsaJI | CCNNGG | 1 cut(s) | 13 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 364, 394 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 316 |
| Bse118I | RCCGGY | 1 cut(s) | 251 |
| BseBI | CCWGG | 1 cut(s) | 14 |
| BseDI | CCNNGG | 1 cut(s) | 13 |
| BseGI | GGATG | 2 cut(s) | 263, 325 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 316 |
| BseMII | CTCAG | 3 cut(s) | 54, 98, 298 |
| BsgI | GTGCAG | 1 cut(s) | 167 |
| BsiHKCI | CYCGRG | 1 cut(s) | 121 |
| BsiSI | CCGG | 2 cut(s) | 144, 252 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 316 |
| BsmAI | GTCTC | 1 cut(s) | 72 |
| BsmI | GAATGC | 3 cut(s) | 79, 350, 401 |
| BsoBI | CYCGRG | 1 cut(s) | 121 |
| Bsp143I | GATC | 1 cut(s) | 234 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 284 |
| BspACI | CCGC | 2 cut(s) | 187, 317 |
| BspCNI | CTCAG | 3 cut(s) | 53, 99, 297 |
| BsrBI | CCGCTC | 1 cut(s) | 189 |
| BsrFI | RCCGGY | 1 cut(s) | 251 |
| BssAI | RCCGGY | 1 cut(s) | 251 |
| BssECI | CCNNGG | 1 cut(s) | 13 |
| BssMI | GATC | 1 cut(s) | 234 |
| Bst2UI | CCWGG | 1 cut(s) | 14 |
| Bst4CI | ACNGT | 2 cut(s) | 158, 164 |
| Bst6I | CTCTTC | 1 cut(s) | 334 |
| BstDEI | CTNAG | 4 cut(s) | 40, 95, 107, 284 |
| BstF5I | GGATG | 2 cut(s) | 263, 325 |
| BstKTI | GATC | 1 cut(s) | 237 |
| BstMAI | GTCTC | 1 cut(s) | 72 |
| BstMBI | GATC | 1 cut(s) | 234 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 117, 392 |
| BstNI | CCWGG | 1 cut(s) | 14 |
| BstSCI | CCNGG | 1 cut(s) | 12 |
| BstV2I | GAAGAC | 2 cut(s) | 238, 335 |
| BtsCI | GGATG | 2 cut(s) | 263, 325 |
| BtsI | GCAGTG | 2 cut(s) | 179, 385 |
| BtsIMutI | CAGTG | 4 cut(s) | 104, 163, 179, 385 |
| Cfr10I | RCCGGY | 1 cut(s) | 251 |
| CseI | GACGC | 1 cut(s) | 214 |
| CviAII | CATG | 1 cut(s) | 222 |
| CviJI | RGCY | 4 cut(s) | 120, 147, 283, 288 |
| CviKI_1 | RGCY | 4 cut(s) | 120, 147, 283, 288 |
| DdeI | CTNAG | 4 cut(s) | 40, 95, 107, 284 |
| DpnI | GATC | 1 cut(s) | 236 |
| DpnII | GATC | 1 cut(s) | 234 |
| Eam1104I | CTCTTC | 1 cut(s) | 334 |
| EarI | CTCTTC | 1 cut(s) | 334 |
| Eco88I | CYCGRG | 1 cut(s) | 121 |
| EcoRII | CCWGG | 1 cut(s) | 12 |
| EcoT22I | ATGCAT | 2 cut(s) | 81, 403 |
| FaeI | CATG | 1 cut(s) | 225 |
| FaiI | YATR | 2 cut(s) | 223, 427 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 230, 262 |
| FatI | CATG | 1 cut(s) | 221 |
| FokI | GGATG | 2 cut(s) | 250, 332 |
| FspBI | CTAG | 2 cut(s) | 212, 336 |
| HapII | CCGG | 2 cut(s) | 144, 252 |
| HgaI | GACGC | 1 cut(s) | 214 |
| Hin1II | CATG | 1 cut(s) | 225 |
| HinfI | GANTC | 2 cut(s) | 90, 293 |
| HpaII | CCGG | 2 cut(s) | 144, 252 |
| HphI | GGTGA | 3 cut(s) | 238, 241, 292 |
| Hpy166II | GTNNAC | 1 cut(s) | 229 |
| Hpy188I | TCNGA | 4 cut(s) | 36, 43, 292, 311 |
| Hpy188III | TCNNGA | 2 cut(s) | 87, 406 |
| Hpy8I | GTNNAC | 1 cut(s) | 229 |
| Hpy99I | CGWCG | 1 cut(s) | 208 |
| HpyCH4III | ACNGT | 2 cut(s) | 158, 164 |
| HpyCH4V | TGCA | 3 cut(s) | 79, 184, 401 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 117, 392 |
| HpyF3I | CTNAG | 4 cut(s) | 40, 95, 107, 284 |
| Hsp92II | CATG | 1 cut(s) | 225 |
| Kzo9I | GATC | 1 cut(s) | 234 |
| LmnI | GCTCC | 1 cut(s) | 293 |
| LpnPI | CCDG | 7 cut(s) | 26, 143, 157, 265, 282, 317, 398 |
| MaeI | CTAG | 2 cut(s) | 212, 336 |
| MaeIII | GTNAC | 2 cut(s) | 158, 164 |
| MalI | GATC | 1 cut(s) | 236 |
| MbiI | CCGCTC | 1 cut(s) | 189 |
| MboI | GATC | 1 cut(s) | 234 |
| MboII | GAAGA | 5 cut(s) | 75, 187, 238, 340, 351 |
| MluCI | AATT | 1 cut(s) | 416 |
| MlyI | GAGTC | 1 cut(s) | 287 |
| MmeI | TCCRAC | 2 cut(s) | 95, 315 |
| MnlI | CCTC | 1 cut(s) | 145 |
| Mph1103I | ATGCAT | 2 cut(s) | 81, 403 |
| MspI | CCGG | 2 cut(s) | 144, 252 |
| MspR9I | CCNGG | 1 cut(s) | 14 |
| Mva1269I | GAATGC | 3 cut(s) | 79, 350, 401 |
| MvaI | CCWGG | 1 cut(s) | 14 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 117, 392 |
| NdeII | GATC | 1 cut(s) | 234 |
| NlaIII | CATG | 1 cut(s) | 225 |
| NmuCI | GTSAC | 1 cut(s) | 158 |
| NsiI | ATGCAT | 2 cut(s) | 81, 403 |
| PaeR7I | CTCGAG | 1 cut(s) | 121 |
| PctI | GAATGC | 3 cut(s) | 79, 350, 401 |
| PfeI | GAWTC | 1 cut(s) | 90 |
| PleI | GAGTC | 1 cut(s) | 287 |
| PpsI | GAGTC | 1 cut(s) | 287 |
| Psp6I | CCWGG | 1 cut(s) | 12 |
| PspGI | CCWGG | 1 cut(s) | 12 |
| PspXI | VCTCGAGB | 1 cut(s) | 121 |
| Sau3AI | GATC | 1 cut(s) | 234 |
| SchI | GAGTC | 1 cut(s) | 287 |
| ScrFI | CCNGG | 1 cut(s) | 14 |
| SetI | ASST | 3 cut(s) | 122, 285, 290 |
| Sfr274I | CTCGAG | 1 cut(s) | 121 |
| SlaI | CTCGAG | 1 cut(s) | 121 |
| SmlI | CTYRAG | 1 cut(s) | 121 |
| SmoI | CTYRAG | 1 cut(s) | 121 |
| Sse9I | AATT | 1 cut(s) | 416 |
| SsiI | CCGC | 2 cut(s) | 187, 317 |
| SspMI | CTAG | 2 cut(s) | 212, 336 |
| StyD4I | CCNGG | 1 cut(s) | 12 |
| TaaI | ACNGT | 2 cut(s) | 158, 164 |
| TaqI | TCGA | 2 cut(s) | 122, 405 |
| TasI | AATT | 1 cut(s) | 416 |
| TfiI | GAWTC | 1 cut(s) | 90 |
| TscAI | CASTG | 4 cut(s) | 111, 163, 186, 385 |
| TseFI | GTSAC | 1 cut(s) | 158 |
| Tsp45I | GTSAC | 1 cut(s) | 158 |
| TspDTI | ATGAA | 1 cut(s) | 288 |
| TspRI | CASTG | 4 cut(s) | 111, 163, 186, 385 |
| XhoI | CTCGAG | 1 cut(s) | 121 |
| XspI | CTAG | 2 cut(s) | 212, 336 |
| Zsp2I | ATGCAT | 2 cut(s) | 81, 403 |