Rw3G003360

SEC-C motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0011179
Physical Location & Seq
Forward (+)
2875083 .. 2877679
2597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G003360.1

Sequence Viewer

Length: 579 bp
ATGCATTCTTCACGAATCCTAAGCACAACACTGAGCAAGAAAAGCTCGAGTTTCCTGTCCTCTCTATCCGGCTATTCTCACAGTGACAGTCACCACACTCCATCACTGCACCGCTCTATCTTCTCCACGACGCAACTAGACAACTCATGGGTGAACAAGATCAAGGGTGTCTTCACCGGCAATAAGACATCCCCAGATGAACCAAAGCTCAGCTCCGACTCATTCACCCTGCTCCGATTTGCGGATGAGTTGAAGACTGCTAGAAGAGTAGGGCCATTCAAGCAATACATTGTTGGGAGAAGCAGTGAAGCGACTTTTGCCGATAATCTCCAAATCACGCAAAAACAAGAAGCAAATGCACTTGCAAAGTTCACCTGGGCCAGAGAAGCACACAACAAGATAGAAAAGTTGAAAGCAGATGGGAAACCAATTCCAACAAACATTGGCGAGGTGCAAAAGTTGATGTGTTCAAGCCCATTTGACCTTGCTCAGTCTAATTTGGCTAAGAGTGGACAAACTAGTAGGAATGCACTTTGTCCGTGTGCGTATTGGTTTATGTGGTATGGAAAGGATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SEC-C

Protein Analysis

192

Amino Acids

21.42

Weight (kDa)

9.63

Isoelectric Point (pI)

45.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011179)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04950
fragaria_vesca FvH4_6g03930
malus_domestica MD12G1234200.v1.1
prunus_persica Prupe.6G337300_v2.0.a1
pyrus_communis pycom04g19330 pycom12g21660
rosa_chinensis RchiOBHm_Chr3g0452481 RchiOBHm_Chr3g0452521
rosa_laevigata RLG00000025595 RLG00000025598
rosa_multiflora Rmu_co8297771.1_g000001 Rmu_sc0011680.1_g000004
rosa_roxburghii Rroxscaffold_6G00429510
rosa_rugosa Rorug02G0641200
rosa_samantha Rh3AG043000 Rh3BG044700 Rh3CG043300 Rh3DG044100
rosa_wichuraiana Rw3G003330 Rw3G003360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 114
AciI CCGC 2 cut(s) 112, 242
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 4 cut(s) 253, 280, 412, 471
AhlI ACTAGT 1 cut(s) 518
AjnI CCWGG 1 cut(s) 374
AluBI AGCT 3 cut(s) 45, 208, 213
AluI AGCT 3 cut(s) 45, 208, 213
Ama87I CYCGRG 1 cut(s) 46
AoxI GGCC 2 cut(s) 272, 378
AspS9I GGNCC 2 cut(s) 272, 378
AsuHPI GGTGA 5 cut(s) 83, 163, 166, 217, 364
AvaI CYCGRG 1 cut(s) 46
BbsI GAAGAC 2 cut(s) 163, 260
BccI CCATC 2 cut(s) 109, 413
BciT130I CCWGG 1 cut(s) 376
BcuI ACTAGT 1 cut(s) 518
BfaI CTAG 3 cut(s) 137, 261, 519
BlpI GCTNAGC 1 cut(s) 209
Bme1390I CCNGG 1 cut(s) 376
BmeT110I CYCGRG 1 cut(s) 46
BmgT120I GGNCC 2 cut(s) 272, 378
BmrFI CCNGG 1 cut(s) 376
BpiI GAAGAC 2 cut(s) 163, 260
Bpu10I CCTNAGC 1 cut(s) 20
Bpu1102I GCTNAGC 1 cut(s) 209
BsaJI CCNNGG 1 cut(s) 375
BsaXI ACNNNNNCTCC 2 cut(s) 289, 319
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse118I RCCGGY 1 cut(s) 176
BseBI CCWGG 1 cut(s) 376
BseDI CCNNGG 1 cut(s) 375
BseGI GGATG 2 cut(s) 188, 250
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMII CTCAG 3 cut(s) 23, 223, 503
BsgI GTGCAG 1 cut(s) 92
BshFI GGCC 2 cut(s) 274, 380
BsiHKCI CYCGRG 1 cut(s) 46
BsiSI CCGG 2 cut(s) 69, 177
BslI CCNNNNNNNGG 1 cut(s) 241
BsmI GAATGC 2 cut(s) 4, 532
BsnI GGCC 2 cut(s) 274, 380
BsoBI CYCGRG 1 cut(s) 46
Bsp143I GATC 1 cut(s) 159
Bsp1720I GCTNAGC 1 cut(s) 209
BspACI CCGC 2 cut(s) 112, 242
BspANI GGCC 2 cut(s) 274, 380
BspCNI CTCAG 3 cut(s) 24, 222, 502
BsrBI CCGCTC 1 cut(s) 114
BsrFI RCCGGY 1 cut(s) 176
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 375
BssMI GATC 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 376
Bst4CI ACNGT 2 cut(s) 83, 89
Bst6I CTCTTC 1 cut(s) 259
BstDEI CTNAG 5 cut(s) 20, 32, 209, 489, 504
BstF5I GGATG 2 cut(s) 188, 250
BstKTI GATC 1 cut(s) 162
BstMBI GATC 1 cut(s) 159
BstMWI GCNNNNNNNGC 4 cut(s) 42, 280, 317, 386
BstNI CCWGG 1 cut(s) 376
BstSCI CCNGG 1 cut(s) 374
BstV2I GAAGAC 2 cut(s) 163, 260
BsuRI GGCC 2 cut(s) 274, 380
BtsCI GGATG 2 cut(s) 188, 250
BtsI GCAGTG 2 cut(s) 104, 310
BtsIMutI CAGTG 4 cut(s) 29, 88, 104, 310
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 2 cut(s) 272, 378
CseI GACGC 1 cut(s) 139
CviAII CATG 1 cut(s) 147
CviJI RGCY 8 cut(s) 45, 72, 208, 213, 274, 380, 474, 503
CviKI_1 RGCY 8 cut(s) 45, 72, 208, 213, 274, 380, 474, 503
DdeI CTNAG 5 cut(s) 20, 32, 209, 489, 504
DpnI GATC 1 cut(s) 161
DpnII GATC 1 cut(s) 159
Eam1104I CTCTTC 1 cut(s) 259
EarI CTCTTC 1 cut(s) 259
Eco88I CYCGRG 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 374
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 150
FaiI YATR 3 cut(s) 148, 557, 564
FalI AAGNNNNNCTT 2 cut(s) 155, 187
FatI CATG 1 cut(s) 146
FokI GGATG 2 cut(s) 175, 257
FspBI CTAG 3 cut(s) 137, 261, 519
HaeIII GGCC 2 cut(s) 274, 380
HapII CCGG 2 cut(s) 69, 177
HgaI GACGC 1 cut(s) 139
Hin1II CATG 1 cut(s) 150
HinfI GANTC 2 cut(s) 15, 218
HpaII CCGG 2 cut(s) 69, 177
HphI GGTGA 5 cut(s) 83, 163, 166, 217, 364
Hpy166II GTNNAC 3 cut(s) 154, 372, 512
Hpy188I TCNGA 2 cut(s) 217, 236
Hpy188III TCNNGA 1 cut(s) 12
Hpy8I GTNNAC 3 cut(s) 154, 372, 512
Hpy99I CGWCG 1 cut(s) 133
HpyCH4III ACNGT 2 cut(s) 83, 89
HpyCH4V TGCA 6 cut(s) 4, 109, 359, 365, 454, 530
HpyF10VI GCNNNNNNNGC 4 cut(s) 42, 280, 317, 386
HpyF3I CTNAG 5 cut(s) 20, 32, 209, 489, 504
Hsp92II CATG 1 cut(s) 150
Kzo9I GATC 1 cut(s) 159
LmnI GCTCC 2 cut(s) 218, 237
LpnPI CCDG 8 cut(s) 68, 82, 190, 207, 242, 361, 388, 394
MaeI CTAG 3 cut(s) 137, 261, 519
MaeIII GTNAC 2 cut(s) 83, 89
MalI GATC 1 cut(s) 161
MbiI CCGCTC 1 cut(s) 114
MboI GATC 1 cut(s) 159
MboII GAAGA 4 cut(s) 112, 163, 265, 276
MluCI AATT 2 cut(s) 429, 496
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 2 cut(s) 240, 458
MnlI CCTC 2 cut(s) 70, 442
Mph1103I ATGCAT 1 cut(s) 6
MspI CCGG 2 cut(s) 69, 177
MspR9I CCNGG 1 cut(s) 376
Mva1269I GAATGC 2 cut(s) 4, 532
MvaI CCWGG 1 cut(s) 376
MwoI GCNNNNNNNGC 4 cut(s) 42, 280, 317, 386
NdeII GATC 1 cut(s) 159
NlaIII CATG 1 cut(s) 150
NmuCI GTSAC 2 cut(s) 83, 89
NsiI ATGCAT 1 cut(s) 6
PaeR7I CTCGAG 1 cut(s) 46
PctI GAATGC 2 cut(s) 4, 532
PfeI GAWTC 1 cut(s) 15
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
Psp6I CCWGG 1 cut(s) 374
PspGI CCWGG 1 cut(s) 374
PspPI GGNCC 2 cut(s) 272, 378
PspXI VCTCGAGB 1 cut(s) 46
Sau3AI GATC 1 cut(s) 159
Sau96I GGNCC 2 cut(s) 272, 378
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 376
SetI ASST 6 cut(s) 47, 210, 215, 377, 453, 486
Sfr274I CTCGAG 1 cut(s) 46
SlaI CTCGAG 1 cut(s) 46
SmlI CTYRAG 1 cut(s) 46
SmoI CTYRAG 1 cut(s) 46
SpeI ACTAGT 1 cut(s) 518
Sse9I AATT 2 cut(s) 429, 496
SsiI CCGC 2 cut(s) 112, 242
SspMI CTAG 3 cut(s) 137, 261, 519
StyD4I CCNGG 1 cut(s) 374
TaaI ACNGT 2 cut(s) 83, 89
TaqI TCGA 1 cut(s) 47
TasI AATT 2 cut(s) 429, 496
TfiI GAWTC 1 cut(s) 15
TscAI CASTG 4 cut(s) 36, 88, 111, 310
TseFI GTSAC 2 cut(s) 83, 89
Tsp45I GTSAC 2 cut(s) 83, 89
TspDTI ATGAA 1 cut(s) 213
TspGWI ACGGA 1 cut(s) 528
TspRI CASTG 4 cut(s) 36, 88, 111, 310
XhoI CTCGAG 1 cut(s) 46
XspI CTAG 3 cut(s) 137, 261, 519
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.