Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006168

Physical Location & Seq

Genomic Coordinates Reverse (-)

22083483 .. 22085125

Gene Structure 1643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g20600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGAAACTTGAAATAGAGTTCTTCTCTGCTCAGCCCCTTGTTCAGCCAACTGTAGTTCCTCTGATCAAAGAGCATAACCCTGCAGAAGATCGGCTCGTGATATTTTCTGATTTTGACTTGACTTGCACAATTGTCGATTCATCTGCCATTTTGGCTGAAATTGCAATAGTAACAGCACCAAAATCTGATAAAAAATCTGATCAACATCAACCTGAAAATCAGATTGCTCGGATGTCATCAGCTGATCTCAGGAATACATGGGGTCTTCTTTCCAGGCAGTACACAGAAGAGTATGAGCAATGCATAGAAAGCATCGTTCCCACTGAAAAAGCGGTGTTTGACTTTGAAAAGTTGCATAAAGCACTAGAGAAACTTTCAGATTTTGAGAGGAAGGCAAACAATAGAGTTACAAAGTCAGGAGTGCTCAAGGGTCTTAATCTTGAAGATATAAAAAGAGCTGGTGAACGTCTCATTCTTCAAGATGGTTGTATTAATTTCTTCCAGAAAATTGTCAAGAGTGAAAACTTGAATACAAATGTTCATGTTCTTTCATACTGTTGGTGTGGTGATCTCATAAGGTCGGCCTTTTCATCAGGTGGTTTACCCGAGCTGGATGTGCATGCAAATGAGTTTACTTTTAAGGAATCCATATCCACAGGTGACATTGTTAAGAAGGTGGAGTCTCCTATTAACAAGGTTCAATCTTTCAAAGAAATATTGAAAAATTGCAGCAATGACAGAAAGAACTTAACCGTTTACATTGGAGACTCAGTGGGTGATTTACTCTGTCTGCTGGAGGCAGATATTGGTATCGTAATTGGGTCAAGTTCAAGCCTTAGGAGAGTGGCGACTCAGTTTGGGGTATCTTTTGTTCCTTTGTTCGCGGGTTTAGTTAAGAAACAGAAAGAATGCACAGATGGAAGGTCTTCTAATTGGAAAGGGTTAACCGGTATTCTTTACACAGTGAATAGTTGGGCGGAAATACATGCCTTCATTTTGGGTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006725 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009228 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0017144 GO:0018130 GO:0019438 GO:0034641 GO:0042131 GO:0042364 GO:0042578 GO:0042723 GO:0042724 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0072527 GO:0072528 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TENA_THI-4

Protein Analysis

336

Amino Acids

37.34

Weight (kDa)

5.79

Isoelectric Point (pI)

42.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32470
fragaria_vesca	FvH4_6g01520 FvH4_6g01520 FvH4_6g01520 FvH4_6g01520 FvH4_6g01520 FvH4_6g01520
malus_domestica	MD04G1232700.v1.1 MD12G1250300.v1.1
prunus_persica	Prupe.6G352500_v2.0.a1 Prupe.6G352500_v2.0.a1 Prupe.6G352500_v2.0.a1 Prupe.6G352500_v2.0.a1 Prupe.6G352500_v2.0.a1
pyrus_communis	pycom04g20600 pycom12g23040
rosa_chinensis	RchiOBHm_Chr3g0449211
rosa_laevigata	RLG00000025845
rosa_multiflora	Rmu_sc0004874.1_g000007
rosa_roxburghii	Rroxscaffold_6G00427250
rosa_rugosa	Rorug02G0618800 Rorug02G0618900
rosa_samantha	Rh3AG017100 Rh3BG017200 Rh3CG016200 Rh3DG017500
rosa_wichuraiana	Rw3G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	884
AciI	CCGC	3 cut(s)	332, 884, 977
AfaI	GTAC	1 cut(s)	281
AgeI	ACCGGT	1 cut(s)	947
AgsI	TTSAA	9 cut(s)	11, 347, 443, 479, 529, 701, 709, 721, 831
AjnI	CCWGG	1 cut(s)	272
AluBI	AGCT	3 cut(s)	242, 458, 610
AluI	AGCT	3 cut(s)	242, 458, 610
Alw21I	GWGCWC	1 cut(s)	426
Alw26I	GTCTC	3 cut(s)	473, 687, 759
Ama87I	CYCGRG	1 cut(s)	605
AoxI	GGCC	1 cut(s)	582
ApeKI	GCWGC	1 cut(s)	729
AseI	ATTAAT	1 cut(s)	492
AsiGI	ACCGGT	1 cut(s)	947
Asp700I	GAANNNNTTC	1 cut(s)	925
AsuHPI	GGTGA	4 cut(s)	473, 578, 671, 788
AvaI	CYCGRG	1 cut(s)	605
AxyI	CCTNAGG	1 cut(s)	836
BauI	CACGAG	1 cut(s)	95
BbsI	GAAGAC	2 cut(s)	257, 918
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	1 cut(s)	741
BccI	CCATC	2 cut(s)	476, 911
BcgI	CGANNNNNNTGC	4 cut(s)	115, 125, 149, 159
BciT130I	CCWGG	1 cut(s)	274
BclI	TGATCA	2 cut(s)	63, 199
BcoDI	GTCTC	3 cut(s)	473, 687, 759
BfaI	CTAG	1 cut(s)	365
BfmI	CTRYAG	2 cut(s)	51, 81
BglI	GCCNNNNNGGC	1 cut(s)	152
BisI	GCNGC	1 cut(s)	730
BlpI	GCTNAGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	731
Bme1390I	CCNGG	1 cut(s)	274
BmeT110I	CYCGRG	1 cut(s)	605
BmrFI	CCNGG	1 cut(s)	274
BmsI	GCATC	1 cut(s)	321
BpiI	GAAGAC	2 cut(s)	257, 918
BplI	GAGNNNNNCTC	2 cut(s)	8, 40
BpmI	CTGGAG	1 cut(s)	815
Bpu1102I	GCTNAGC	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	410
BsaBI	GATNNNNATC	1 cut(s)	204
BsaWI	WCCGGW	1 cut(s)	947
BsaXI	ACNNNNNCTCC	2 cut(s)	756, 786
Bse118I	RCCGGY	1 cut(s)	947
Bse21I	CCTNAGG	1 cut(s)	836
Bse3DI	GCAATG	2 cut(s)	305, 739
Bse8I	GATNNNNATC	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	274
BseGI	GGATG	2 cut(s)	237, 619
BseJI	GATNNNNATC	1 cut(s)	204
BseMI	GCAATG	2 cut(s)	305, 739
BseMII	CTCAG	4 cut(s)	44, 262, 783, 866
BseXI	GCAGC	1 cut(s)	741
Bsh1236I	CGCG	1 cut(s)	884
BshFI	GGCC	1 cut(s)	584
BshTI	ACCGGT	1 cut(s)	947
BsiHKAI	GWGCWC	1 cut(s)	426
BsiHKCI	CYCGRG	1 cut(s)	605
BsiSI	CCGG	1 cut(s)	948
BsmAI	GTCTC	3 cut(s)	473, 687, 759
BsmBI	CGTCTC	1 cut(s)	473
BsmI	GAATGC	1 cut(s)	914
BsnI	GGCC	1 cut(s)	584
BsoBI	CYCGRG	1 cut(s)	605
Bsp1286I	GDGCHC	1 cut(s)	426
Bsp143I	GATC	5 cut(s)	63, 88, 199, 244, 568
Bsp1720I	GCTNAGC	1 cut(s)	30
BspACI	CCGC	3 cut(s)	332, 884, 977
BspANI	GGCC	1 cut(s)	584
BspCNI	CTCAG	4 cut(s)	43, 261, 782, 865
BspFNI	CGCG	1 cut(s)	884
BspMAI	CTGCAG	1 cut(s)	85
BsrDI	GCAATG	2 cut(s)	305, 739
BsrFI	RCCGGY	1 cut(s)	947
BssAI	RCCGGY	1 cut(s)	947
BssMI	GATC	5 cut(s)	63, 88, 199, 244, 568
BssSI	CACGAG	1 cut(s)	95
Bst2BI	CACGAG	1 cut(s)	95
Bst2UI	CCWGG	1 cut(s)	274
Bst4CI	ACNGT	4 cut(s)	52, 557, 754, 964
Bst6I	CTCTTC	1 cut(s)	282
BstC8I	GCNNGC	1 cut(s)	621
BstDEI	CTNAG	5 cut(s)	30, 248, 769, 836, 852
BstF5I	GGATG	2 cut(s)	237, 619
BstFNI	CGCG	1 cut(s)	884
BstKTI	GATC	5 cut(s)	66, 91, 202, 247, 571
BstMAI	GTCTC	3 cut(s)	473, 687, 759
BstMBI	GATC	5 cut(s)	63, 88, 199, 244, 568
BstMWI	GCNNNNNNNGC	4 cut(s)	152, 161, 309, 616
BstNI	CCWGG	1 cut(s)	274
BstNSI	RCATGY	2 cut(s)	623, 989
BstSCI	CCNGG	1 cut(s)	272
BstSFI	CTRYAG	2 cut(s)	51, 81
BstUI	CGCG	1 cut(s)	884
BstV1I	GCAGC	1 cut(s)	741
BstV2I	GAAGAC	2 cut(s)	257, 918
Bsu36I	CCTNAGG	1 cut(s)	836
BsuRI	GGCC	1 cut(s)	584
BtsCI	GGATG	2 cut(s)	237, 619
BtsIMutI	CAGTG	3 cut(s)	321, 777, 969
Cac8I	GCNNGC	1 cut(s)	621
Cfr10I	RCCGGY	1 cut(s)	947
Csp6I	GTAC	1 cut(s)	280
CspAI	ACCGGT	1 cut(s)	947
CviAII	CATG	4 cut(s)	258, 542, 620, 986
CviJI	RGCY	9 cut(s)	34, 46, 94, 155, 242, 458, 584, 610, 834
CviKI_1	RGCY	9 cut(s)	34, 46, 94, 155, 242, 458, 584, 610, 834
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	5 cut(s)	30, 248, 769, 836, 852
DpnI	GATC	5 cut(s)	65, 90, 201, 246, 570
DpnII	GATC	5 cut(s)	63, 88, 199, 244, 568
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
EciI	GGCGGA	1 cut(s)	992
Eco81I	CCTNAGG	1 cut(s)	836
Eco88I	CYCGRG	1 cut(s)	605
EcoRII	CCWGG	1 cut(s)	272
EcoT22I	ATGCAT	1 cut(s)	305
Esp3I	CGTCTC	1 cut(s)	473
FaeI	CATG	4 cut(s)	261, 545, 623, 989
FatI	CATG	4 cut(s)	257, 541, 619, 985
FauI	CCCGC	1 cut(s)	877
FbaI	TGATCA	2 cut(s)	63, 199
Fnu4HI	GCNGC	1 cut(s)	730
FokI	GGATG	2 cut(s)	244, 626
Fsp4HI	GCNGC	1 cut(s)	730
FspBI	CTAG	1 cut(s)	365
GluI	GCNGC	1 cut(s)	730
GsuI	CTGGAG	1 cut(s)	815
HaeIII	GGCC	1 cut(s)	584
HapII	CCGG	1 cut(s)	948
Hin1II	CATG	4 cut(s)	261, 545, 623, 989
HincII	GTYRAC	1 cut(s)	945
HindII	GTYRAC	1 cut(s)	945
HinfI	GANTC	5 cut(s)	137, 644, 680, 767, 850
HpaI	GTTAAC	1 cut(s)	945
HpaII	CCGG	1 cut(s)	948
HphI	GGTGA	4 cut(s)	473, 578, 671, 788
Hpy166II	GTNNAC	6 cut(s)	282, 464, 602, 633, 757, 945
Hpy188I	TCNGA	7 cut(s)	63, 109, 187, 199, 222, 231, 379
Hpy188III	TCNNGA	7 cut(s)	97, 250, 417, 440, 479, 502, 514
Hpy8I	GTNNAC	6 cut(s)	282, 464, 602, 633, 757, 945
HpyAV	CCTTC	4 cut(s)	385, 667, 915, 1000
HpyCH4III	ACNGT	4 cut(s)	52, 557, 754, 964
HpyCH4IV	ACGT	1 cut(s)	466
HpyCH4V	TGCA	9 cut(s)	83, 126, 164, 303, 355, 619, 623, 729, 912
HpyF10VI	GCNNNNNNNGC	4 cut(s)	152, 161, 309, 616
HpyF3I	CTNAG	5 cut(s)	30, 248, 769, 836, 852
HpySE526I	ACGT	1 cut(s)	466
Hsp92II	CATG	4 cut(s)	261, 545, 623, 989
Ksp22I	TGATCA	2 cut(s)	63, 199
KspAI	GTTAAC	1 cut(s)	945
Kzo9I	GATC	5 cut(s)	63, 88, 199, 244, 568
Lsp1109I	GCAGC	1 cut(s)	741
LweI	GCATC	1 cut(s)	321
MaeI	CTAG	1 cut(s)	365
MaeII	ACGT	1 cut(s)	466
MaeIII	GTNAC	3 cut(s)	169, 406, 659
MalI	GATC	5 cut(s)	65, 90, 201, 246, 570
MboI	GATC	5 cut(s)	63, 88, 199, 244, 568
MboII	GAAGA	8 cut(s)	13, 98, 257, 299, 455, 467, 490, 918
MfeI	CAATTG	1 cut(s)	129
MhlI	GDGCHC	1 cut(s)	426
MluCI	AATT	7 cut(s)	129, 159, 493, 507, 724, 816, 931
MlyI	GAGTC	3 cut(s)	689, 761, 844
MnlI	CCTC	3 cut(s)	69, 381, 790
Mph1103I	ATGCAT	1 cut(s)	305
MroXI	GAANNNNTTC	1 cut(s)	925
MseI	TTAA	8 cut(s)	435, 492, 639, 669, 690, 749, 894, 944
MslI	CAYNNNNRTG	1 cut(s)	624
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	1 cut(s)	948
MspR9I	CCNGG	1 cut(s)	274
MunI	CAATTG	1 cut(s)	129
Mva1269I	GAATGC	1 cut(s)	914
MvaI	CCWGG	1 cut(s)	274
MvnI	CGCG	1 cut(s)	884
MwoI	GCNNNNNNNGC	4 cut(s)	152, 161, 309, 616
NdeII	GATC	5 cut(s)	63, 88, 199, 244, 568
NlaIII	CATG	4 cut(s)	261, 545, 623, 989
NmuCI	GTSAC	1 cut(s)	659
NsiI	ATGCAT	1 cut(s)	305
NspI	RCATGY	2 cut(s)	623, 989
PaeI	GCATGC	1 cut(s)	623
PctI	GAATGC	1 cut(s)	914
PdmI	GAANNNNTTC	1 cut(s)	925
PfeI	GAWTC	2 cut(s)	137, 644
PinAI	ACCGGT	1 cut(s)	947
PkrI	GCNGC	1 cut(s)	731
PleI	GAGTC	3 cut(s)	688, 761, 844
PpsI	GAGTC	3 cut(s)	688, 761, 844
PshBI	ATTAAT	1 cut(s)	492
Psp6I	CCWGG	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	272
PsrI	GAACNNNNNNTAC	2 cut(s)	855, 887
PstI	CTGCAG	1 cut(s)	85
PvuII	CAGCTG	1 cut(s)	242
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	624
SaqAI	TTAA	8 cut(s)	435, 492, 639, 669, 690, 749, 894, 944
SatI	GCNGC	1 cut(s)	730
Sau3AI	GATC	5 cut(s)	63, 88, 199, 244, 568
SchI	GAGTC	3 cut(s)	689, 761, 844
ScrFI	CCNGG	1 cut(s)	274
SduI	GDGCHC	1 cut(s)	426
SfaNI	GCATC	1 cut(s)	321
SfcI	CTRYAG	2 cut(s)	51, 81
SmiMI	CAYNNNNRTG	1 cut(s)	624
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
SphI	GCATGC	1 cut(s)	623
Sse9I	AATT	7 cut(s)	129, 159, 493, 507, 724, 816, 931
SsiI	CCGC	3 cut(s)	332, 884, 977
SspI	AATATT	1 cut(s)	717
SspMI	CTAG	1 cut(s)	365
StyD4I	CCNGG	1 cut(s)	272
TaaI	ACNGT	4 cut(s)	52, 557, 754, 964
TaiI	ACGT	1 cut(s)	469
TaqI	TCGA	1 cut(s)	135
TasI	AATT	7 cut(s)	129, 159, 493, 507, 724, 816, 931
TatI	WGTACW	1 cut(s)	279
TfiI	GAWTC	2 cut(s)	137, 644
Tru1I	TTAA	8 cut(s)	435, 492, 639, 669, 690, 749, 894, 944
Tru9I	TTAA	8 cut(s)	435, 492, 639, 669, 690, 749, 894, 944
TscAI	CASTG	3 cut(s)	328, 777, 969
TseFI	GTSAC	1 cut(s)	659
TseI	GCWGC	1 cut(s)	729
Tsp45I	GTSAC	1 cut(s)	659
TspDTI	ATGAA	6 cut(s)	17, 129, 530, 540, 579, 982
TspRI	CASTG	3 cut(s)	328, 777, 969
VspI	ATTAAT	1 cut(s)	492
XceI	RCATGY	2 cut(s)	623, 989
XmnI	GAANNNNTTC	1 cut(s)	925
XspI	CTAG	1 cut(s)	365
Zsp2I	ATGCAT	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.