Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006168

Physical Location & Seq

Genomic Coordinates Forward (+)

47860285 .. 47864469

Gene Structure 4185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00427250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1950 bp

ATGATACCCACTCTGCCACTTTCACACCCTCCACCACCACCAGGTAATAAAAAGCAGATAAAAACTTCCCTCTCTTTTCACACACTCTTACCAAACCCAACTCTTTCTTTCTCCTCCTCCTCCTCTCTCTCTCTAGTTTTCTCCTCCATTGATGCGATTGATGCGCTCACTCTTCCCTCCAAACCCAATCAAAACCCCCAAACCCTCTTCACCTCCCTCCGATCCCTCTCCCTCTCCTCAATGGCCATACCCCCTCCCAAGTCCGCCATCCCCTCCGCCGCCGCCGACAACGAGGCCGGCCTCGCCCGCCGCTTCTGGATCAAGTTCCGCCGCGAATCGATTTTCGCTCTGTTCCATCCCTTCTCGCTCTGCTTGGCCTCCGGCGACCTCAAGATTGAGTCTTTCCGCAGCTACATCGCCCAAGATGCTCACTTTCTCAAGGCCTTTGCCCACGCGTATGAGTTGGCAGAAGAGTGCGCAGATGATGATGATGCAAAGCTAGGAATTTCTGAGTTAAGGAGTGCTGTTCTTCAGGAACTGAAAATGCATAATTCATTCGTGCAGGAATGGGGTTTAGATGCTAAGGACATCTCTATCAGCTCTGCAGCAGTAAAGTACACAGAATTCTTATTGGCAACAGCCTCTGGTAAAGTTGAGGGAGTAAAAGGCCCTGGTAAACTTGCAACTCCATTTGAAAGAACCAAAGTTGCTGCTTATACCCTTGGTGCCATGACTCCTTGCATGAGATTGTATGCCTTTATAGGTAAGGAGTTCAAGGCAGTTCTAGATCCCAAAGACGGCACTCATCCATACAAGAAGTGGATCGACAATTATTCTTCCGAAAGTTTTCAGGCATCAGCTGTGCAAACTGAAGAGTTGCTGGATAAGCTAAGTGTCTCTTTGACTGGCGAGGAGCTTGACATCATTGAAAAGCTTTATCATCAAGCCATGAAACTTGAGATAGAGTTCTTTTCAGCCCAGTCACTTCTTCAACCAACTGTAGTTCCTCTTATCAAAGATCATGACTCTGCAAAAGATCACCTCATGATATTTTCAGATTTTGATTTGACTTGTACTGTTGTTGATTCCTCTGCCATTTTGGCTGAAATTGCAATAGTAACTGCCCCAAAACCAGATCAAAATCAATCTGAAGAACAGATTACGCGGATGTCATCGGCTGATCTCAGAAATACATGGGGCCTTCTTTCCAAGCAGTACACAGAAGAGTACGAGCAATGCATAGAAAGCATTATTCCTACTAAAAGAGCGGAGTTTGTCTATAACAATCTGCATAAAGCGCTCGAGCAACTTTCAGAGTTCGAGAAAAAGGCAAACAATAGAGTGATAGAGTCAGGGGTTCTGAAGGGTCTTAATATTGAAGATATAAAAAGAGCTGGTGAACGTCTCATTCTTCAAGATGGTTGTATTGATTTCTTCAAGAAAATTATCAAAAGTGATAACTTGAACGTAAATGTTCATGTTCTTTCGTATTGTTGGTGTGGTGATCTTATTAGGCTTGAAGTTCCTTATGTTGAGCGGGGTTTACATGAACCAAATGTTCATGCAAATGAGTTCACATTTGAAGAATCTATTTCCACTGGTAAAATTGTTAAGAAGGTGGAGTCTCCTATTGACAAGGTCCAAGCTTTCAGAGATATTATAAAAAGTTGTCAAAGTGACAGGAAGAACTTGACTATTTACATTGGAGACTCGGTGGGTGACTTACTATGCCTCCTGGAGGCAGATATAGGAATTGTCATAGGGTCAAGCTCAAGCCTGAGGAGAGTGGGGACTCAATTCGGTGTTTCTTTTGTTCCACTGTTTCCTGGTTTAGTTAAGAAACAAAAAGAATGCATTGAAGGAAGGTCTTCTAATTGGAAAGGGTTAACTGGCATTCTTTATACAGCTTCTAGTTGGGCTGAAATACATGCCTTCATTTTGGGGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006725 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009228 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0017144 GO:0018130 GO:0019438 GO:0034641 GO:0042131 GO:0042364 GO:0042578 GO:0042723 GO:0042724 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0072527 GO:0072528 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TENA_THI-4

Protein Analysis

649

Amino Acids

72.04

Weight (kDa)

5.77

Isoelectric Point (pI)

46.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TENA_THI-4	PF03070	115 - 216	5.2e-12	TENA/THI-4/PQQC family
TENA_THI-4	PF03070	236 - 326	7.6e-09	TENA/THI-4/PQQC family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32470
fragaria_vesca	FvH4_6g01520 FvH4_6g01520 FvH4_6g01520 FvH4_6g01520 FvH4_6g01520 FvH4_6g01520
malus_domestica	MD04G1232700.v1.1 MD12G1250300.v1.1
prunus_persica	Prupe.6G352500_v2.0.a1 Prupe.6G352500_v2.0.a1 Prupe.6G352500_v2.0.a1 Prupe.6G352500_v2.0.a1 Prupe.6G352500_v2.0.a1
pyrus_communis	pycom04g20600 pycom12g23040
rosa_chinensis	RchiOBHm_Chr3g0449211
rosa_laevigata	RLG00000025845
rosa_multiflora	Rmu_sc0004874.1_g000007
rosa_roxburghii	Rroxscaffold_6G00427250
rosa_rugosa	Rorug02G0618800 Rorug02G0618900
rosa_samantha	Rh3AG017100 Rh3BG017200 Rh3CG016200 Rh3DG017500
rosa_wichuraiana	Rw3G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1661
Acc16I	TGCGCA	1 cut(s)	478
AccB1I	GGYRCC	1 cut(s)	725
AccBSI	CCGCTC	2 cut(s)	1268, 1537
AccII	CGCG	3 cut(s)	333, 455, 1165
AclWI	GGATC	4 cut(s)	216, 326, 782, 830
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	2 cut(s)	504, 623
AcuI	CTGAAG	4 cut(s)	515, 891, 1170, 1382
AfaI	GTAC	4 cut(s)	617, 1075, 1217, 1229
AfeI	AGCGCT	1 cut(s)	1299
AfiI	CCNNNNNNNGG	3 cut(s)	41, 797, 1738
AflIII	ACRYGT	1 cut(s)	453
AjnI	CCWGG	4 cut(s)	40, 670, 1734, 1825
Alw26I	GTCTC	4 cut(s)	901, 1409, 1629, 1701
AlwI	GGATC	4 cut(s)	216, 326, 782, 830
AlwNI	CAGNNNCTG	2 cut(s)	538, 644
Ama87I	CYCGRG	1 cut(s)	1301
Aor51HI	AGCGCT	1 cut(s)	1299
AoxI	GGCC	7 cut(s)	243, 294, 298, 375, 441, 667, 1198
ApeKI	GCWGC	3 cut(s)	408, 605, 710
ApoI	RAATTY	2 cut(s)	504, 623
Asp700I	GAANNNNTTC	2 cut(s)	846, 1867
AspLEI	GCGC	3 cut(s)	166, 479, 1300
AspS9I	GGNCC	3 cut(s)	668, 1198, 1639
AsuHPI	GGTGA	5 cut(s)	202, 1031, 1409, 1514, 1730
AvaI	CYCGRG	1 cut(s)	1301
AvaII	GGWCC	1 cut(s)	1639
AxyI	CCTNAGG	1 cut(s)	1778
BalI	TGGCCA	1 cut(s)	245
BanI	GGYRCC	1 cut(s)	725
BbsI	GAAGAC	1 cut(s)	1860
BbvI	GCAGC	3 cut(s)	420, 617, 697
BccI	CCATC	3 cut(s)	275, 363, 1412
BceAI	ACGGC	1 cut(s)	814
BcgI	CGANNNNNNTGC	2 cut(s)	397, 431
BciT130I	CCWGG	4 cut(s)	42, 672, 1736, 1827
BcoDI	GTCTC	4 cut(s)	901, 1409, 1629, 1701
BfaI	CTAG	4 cut(s)	134, 500, 785, 1911
BfmI	CTRYAG	2 cut(s)	603, 999
BfoI	RGCGCY	1 cut(s)	1301
BglI	GCCNNNNNGGC	1 cut(s)	1100
BisI	GCNGC	7 cut(s)	279, 282, 310, 331, 409, 606, 711
BlsI	GCNGC	7 cut(s)	280, 283, 311, 332, 410, 607, 712
Bme1390I	CCNGG	4 cut(s)	42, 672, 1736, 1827
Bme18I	GGWCC	1 cut(s)	1639
BmeT110I	CYCGRG	1 cut(s)	1301
BmgT120I	GGNCC	3 cut(s)	668, 1198, 1639
BmiI	GGNNCC	2 cut(s)	727, 1199
BmrFI	CCNGG	4 cut(s)	42, 672, 1736, 1827
BmrI	ACTGGG	1 cut(s)	973
BmsI	GCATC	6 cut(s)	142, 151, 415, 481, 568, 863
BmuI	ACTGGG	1 cut(s)	973
BpiI	GAAGAC	1 cut(s)	1860
BpmI	CTGGAG	1 cut(s)	1757
Bpu10I	CCTNAGC	1 cut(s)	582
BpuEI	CTTGAG	4 cut(s)	374, 422, 977, 1756
Bsa29I	ATCGAT	1 cut(s)	338
BsaBI	GATNNNNATC	1 cut(s)	1140
BsaJI	CCNNGG	2 cut(s)	670, 721
BsaXI	ACNNNNNCTCC	4 cut(s)	1698, 1716, 1728, 1746
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 797, 1738
Bse118I	RCCGGY	1 cut(s)	296
Bse1I	ACTGG	4 cut(s)	910, 979, 1603, 1894
Bse21I	CCTNAGG	1 cut(s)	1778
Bse3DI	GCAATG	1 cut(s)	1241
Bse8I	GATNNNNATC	1 cut(s)	1140
BseBI	CCWGG	4 cut(s)	42, 672, 1736, 1827
BseCI	ATCGAT	1 cut(s)	338
BseDI	CCNNGG	2 cut(s)	670, 721
BseGI	GGATG	4 cut(s)	267, 355, 805, 1173
BseJI	GATNNNNATC	1 cut(s)	1140
BseLI	CCNNNNNNNGG	3 cut(s)	41, 797, 1738
BseMI	GCAATG	1 cut(s)	1241
BseMII	CTCAG	3 cut(s)	501, 1198, 1769
BseNI	ACTGG	4 cut(s)	910, 979, 1603, 1894
BseRI	GAGGAG	8 cut(s)	103, 106, 109, 112, 133, 226, 926, 1795
BseXI	GCAGC	3 cut(s)	420, 617, 697
BsgI	GTGCAG	1 cut(s)	581
Bsh1236I	CGCG	3 cut(s)	333, 455, 1165
BshFI	GGCC	7 cut(s)	245, 296, 300, 377, 443, 669, 1200
BshNI	GGYRCC	1 cut(s)	725
BshVI	ATCGAT	1 cut(s)	338
BsiHKCI	CYCGRG	1 cut(s)	1301
BsiSI	CCGG	2 cut(s)	297, 381
BslFI	GGGAC	1 cut(s)	1804
BslI	CCNNNNNNNGG	3 cut(s)	41, 797, 1738
BsmAI	GTCTC	4 cut(s)	901, 1409, 1629, 1701
BsmBI	CGTCTC	1 cut(s)	1409
BsmFI	GGGAC	1 cut(s)	1804
BsmI	GAATGC	2 cut(s)	1856, 1893
BsnI	GGCC	7 cut(s)	245, 296, 300, 377, 443, 669, 1200
BsoBI	CYCGRG	1 cut(s)	1301
Bsp143I	GATC	9 cut(s)	221, 318, 787, 822, 1018, 1036, 1135, 1180, 1504
BspANI	GGCC	7 cut(s)	245, 296, 300, 377, 443, 669, 1200
BspCNI	CTCAG	3 cut(s)	502, 1197, 1770
BspDI	ATCGAT	1 cut(s)	338
BspFNI	CGCG	3 cut(s)	333, 455, 1165
BspHI	TCATGA	2 cut(s)	1021, 1044
BspLI	GGNNCC	2 cut(s)	727, 1199
BspMAI	CTGCAG	1 cut(s)	607
BspPI	GGATC	4 cut(s)	216, 326, 782, 830
BspT107I	GGYRCC	1 cut(s)	725
BsrBI	CCGCTC	2 cut(s)	1268, 1537
BsrDI	GCAATG	1 cut(s)	1241
BsrFI	RCCGGY	1 cut(s)	296
BsrI	ACTGG	4 cut(s)	910, 979, 1603, 1894
BssAI	RCCGGY	1 cut(s)	296
BssECI	CCNNGG	2 cut(s)	670, 721
BssMI	GATC	9 cut(s)	221, 318, 787, 822, 1018, 1036, 1135, 1180, 1504
BssT1I	CCWWGG	1 cut(s)	721
Bst2UI	CCWGG	4 cut(s)	42, 672, 1736, 1827
Bst4CI	ACNGT	3 cut(s)	1000, 1078, 1821
Bst6I	CTCTTC	5 cut(s)	177, 212, 465, 867, 1218
BstC8I	GCNNGC	2 cut(s)	298, 307
BstDEI	CTNAG	5 cut(s)	510, 582, 890, 1184, 1778
BstENI	CCTNNNNNAGG	1 cut(s)	1736
BstF5I	GGATG	4 cut(s)	267, 355, 805, 1173
BstFNI	CGCG	3 cut(s)	333, 455, 1165
BstH2I	RGCGCY	1 cut(s)	1301
BstHHI	GCGC	3 cut(s)	166, 479, 1300
BstKTI	GATC	9 cut(s)	224, 321, 790, 825, 1021, 1039, 1138, 1183, 1507
BstMAI	GTCTC	4 cut(s)	901, 1409, 1629, 1701
BstMBI	GATC	9 cut(s)	221, 318, 787, 822, 1018, 1036, 1135, 1180, 1504
BstMWI	GCNNNNNNNGC	9 cut(s)	161, 302, 306, 425, 886, 1100, 1109, 1245, 1297
BstNI	CCWGG	4 cut(s)	42, 672, 1736, 1827
BstNSI	RCATGY	1 cut(s)	1931
BstSCI	CCNGG	4 cut(s)	40, 670, 1734, 1825
BstSFI	CTRYAG	2 cut(s)	603, 999
BstUI	CGCG	3 cut(s)	333, 455, 1165
BstV1I	GCAGC	3 cut(s)	420, 617, 697
BstV2I	GAAGAC	1 cut(s)	1860
BstX2I	RGATCY	1 cut(s)	787
BstYI	RGATCY	1 cut(s)	787
Bsu15I	ATCGAT	1 cut(s)	338
Bsu36I	CCTNAGG	1 cut(s)	1778
BsuRI	GGCC	7 cut(s)	245, 296, 300, 377, 443, 669, 1200
BsuTUI	ATCGAT	1 cut(s)	338
BtgZI	GCGATG	1 cut(s)	400
BtsCI	GGATG	4 cut(s)	267, 355, 805, 1173
BtsIMutI	CAGTG	2 cut(s)	1596, 1817
Cac8I	GCNNGC	2 cut(s)	298, 307
CaiI	CAGNNNCTG	2 cut(s)	538, 644
CciI	TCATGA	2 cut(s)	1021, 1044
CfoI	GCGC	3 cut(s)	166, 479, 1300
Cfr10I	RCCGGY	1 cut(s)	296
Cfr13I	GGNCC	3 cut(s)	668, 1198, 1639
ClaI	ATCGAT	1 cut(s)	338
CsiI	ACCWGGT	1 cut(s)	40
Csp6I	GTAC	4 cut(s)	616, 1074, 1216, 1228
CviQI	GTAC	4 cut(s)	616, 1074, 1216, 1228
DdeI	CTNAG	5 cut(s)	510, 582, 890, 1184, 1778
DpnI	GATC	9 cut(s)	223, 320, 789, 824, 1020, 1038, 1137, 1182, 1506
DpnII	GATC	9 cut(s)	221, 318, 787, 822, 1018, 1036, 1135, 1180, 1504
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	5 cut(s)	177, 212, 465, 867, 1218
EarI	CTCTTC	5 cut(s)	177, 212, 465, 867, 1218
EciI	GGCGGA	3 cut(s)	253, 265, 317
Eco130I	CCWWGG	1 cut(s)	721
Eco147I	AGGCCT	1 cut(s)	443
Eco47I	GGWCC	1 cut(s)	1639
Eco47III	AGCGCT	1 cut(s)	1299
Eco57I	CTGAAG	4 cut(s)	515, 891, 1170, 1382
Eco81I	CCTNAGG	1 cut(s)	1778
Eco88I	CYCGRG	1 cut(s)	1301
EcoNI	CCTNNNNNAGG	1 cut(s)	1736
EcoO109I	RGGNCCY	2 cut(s)	668, 1198
EcoRI	GAATTC	1 cut(s)	623
EcoRII	CCWGG	4 cut(s)	40, 670, 1734, 1825
EcoT14I	CCWWGG	1 cut(s)	721
EcoT22I	ATGCAT	3 cut(s)	549, 1241, 1856
ErhI	CCWWGG	1 cut(s)	721
Esp3I	CGTCTC	1 cut(s)	1409
FalI	AAGNNNNNCTT	2 cut(s)	883, 915
FaqI	GGGAC	1 cut(s)	1804
FauI	CCCGC	2 cut(s)	314, 1530
Fnu4HI	GCNGC	7 cut(s)	279, 282, 310, 331, 409, 606, 711
FokI	GGATG	4 cut(s)	254, 342, 792, 1180
FseI	GGCCGGCC	1 cut(s)	300
Fsp4HI	GCNGC	7 cut(s)	279, 282, 310, 331, 409, 606, 711
FspBI	CTAG	4 cut(s)	134, 500, 785, 1911
FspI	TGCGCA	1 cut(s)	478
GlaI	GCGC	3 cut(s)	165, 478, 1299
GluI	GCNGC	7 cut(s)	279, 282, 310, 331, 409, 606, 711
GsuI	CTGGAG	1 cut(s)	1757
HaeII	RGCGCY	1 cut(s)	1301
HaeIII	GGCC	7 cut(s)	245, 296, 300, 377, 443, 669, 1200
HapII	CCGG	2 cut(s)	297, 381
HhaI	GCGC	3 cut(s)	166, 479, 1300
Hin6I	GCGC	3 cut(s)	164, 477, 1298
HinP1I	GCGC	3 cut(s)	164, 477, 1298
HincII	GTYRAC	1 cut(s)	1887
HindII	GTYRAC	1 cut(s)	1887
HindIII	AAGCTT	2 cut(s)	932, 1644
HpaI	GTTAAC	1 cut(s)	1887
HpaII	CCGG	2 cut(s)	297, 381
HphI	GGTGA	5 cut(s)	202, 1031, 1409, 1514, 1730
Hpy166II	GTNNAC	7 cut(s)	618, 677, 1218, 1400, 1544, 1575, 1887
Hpy188I	TCNGA	9 cut(s)	221, 511, 841, 1057, 1150, 1187, 1315, 1362, 1652
Hpy188III	TCNNGA	9 cut(s)	316, 391, 533, 785, 1022, 1045, 1321, 1415, 1438
Hpy8I	GTNNAC	7 cut(s)	618, 677, 1218, 1400, 1544, 1575, 1887
HpyAV	CCTTC	7 cut(s)	370, 1211, 1357, 1609, 1853, 1857, 1942
HpyCH4III	ACNGT	3 cut(s)	1000, 1078, 1821
HpyCH4IV	ACGT	2 cut(s)	1402, 1467
HpyF10VI	GCNNNNNNNGC	9 cut(s)	161, 302, 306, 425, 886, 1100, 1109, 1245, 1297
HpyF3I	CTNAG	5 cut(s)	510, 582, 890, 1184, 1778
HpySE526I	ACGT	2 cut(s)	1402, 1467
HspAI	GCGC	3 cut(s)	164, 477, 1298
KroI	GCCGGC	1 cut(s)	296
KroNI	GCCGGC	1 cut(s)	298
KspAI	GTTAAC	1 cut(s)	1887
Kzo9I	GATC	9 cut(s)	221, 318, 787, 822, 1018, 1036, 1135, 1180, 1504
LmnI	GCTCC	1 cut(s)	913
Lsp1109I	GCAGC	3 cut(s)	420, 617, 697
LweI	GCATC	6 cut(s)	142, 151, 415, 481, 568, 863
MabI	ACCWGGT	1 cut(s)	40
MaeI	CTAG	4 cut(s)	134, 500, 785, 1911
MaeII	ACGT	2 cut(s)	1402, 1467
MaeIII	GTNAC	4 cut(s)	981, 1117, 1676, 1718
MalI	GATC	9 cut(s)	223, 320, 789, 824, 1020, 1038, 1137, 1182, 1506
MbiI	CCGCTC	2 cut(s)	1268, 1537
MboI	GATC	9 cut(s)	221, 318, 787, 822, 1018, 1036, 1135, 1180, 1504
MflI	RGATCY	1 cut(s)	787
MlsI	TGGCCA	1 cut(s)	245
MluI	ACGCGT	1 cut(s)	453
MluNI	TGGCCA	1 cut(s)	245
MlyI	GAGTC	7 cut(s)	407, 727, 1019, 1358, 1631, 1703, 1786
Mox20I	TGGCCA	1 cut(s)	245
Mph1103I	ATGCAT	3 cut(s)	549, 1241, 1856
MroNI	GCCGGC	1 cut(s)	296
MroXI	GAANNNNTTC	2 cut(s)	846, 1867
MscI	TGGCCA	1 cut(s)	245
MseI	TTAA	6 cut(s)	515, 1371, 1611, 1836, 1886, 1948
MslI	CAYNNNNRTG	2 cut(s)	456, 1566
Msp20I	TGGCCA	1 cut(s)	245
MspA1I	CMGCKG	1 cut(s)	860
MspI	CCGG	2 cut(s)	297, 381
MspR9I	CCNGG	4 cut(s)	42, 672, 1736, 1827
Mva1269I	GAATGC	2 cut(s)	1856, 1893
MvaI	CCWGG	4 cut(s)	42, 672, 1736, 1827
MvnI	CGCG	3 cut(s)	333, 455, 1165
MwoI	GCNNNNNNNGC	9 cut(s)	161, 302, 306, 425, 886, 1100, 1109, 1245, 1297
NaeI	GCCGGC	1 cut(s)	298
NdeII	GATC	9 cut(s)	221, 318, 787, 822, 1018, 1036, 1135, 1180, 1504
NgoMIV	GCCGGC	1 cut(s)	296
NlaIV	GGNNCC	2 cut(s)	727, 1199
NmuCI	GTSAC	3 cut(s)	981, 1676, 1718
NsbI	TGCGCA	1 cut(s)	478
NsiI	ATGCAT	3 cut(s)	549, 1241, 1856
NspI	RCATGY	1 cut(s)	1931
PaeR7I	CTCGAG	1 cut(s)	1301
PagI	TCATGA	2 cut(s)	1021, 1044
PceI	AGGCCT	1 cut(s)	443
PctI	GAATGC	2 cut(s)	1856, 1893
PdiI	GCCGGC	1 cut(s)	298
PdmI	GAANNNNTTC	2 cut(s)	846, 1867
PfeI	GAWTC	3 cut(s)	335, 1085, 1586
PflFI	GACNNNGTC	1 cut(s)	1637
PfoI	TCCNGGA	1 cut(s)	1734
PkrI	GCNGC	7 cut(s)	280, 283, 311, 332, 410, 607, 712
PleI	GAGTC	7 cut(s)	406, 727, 1019, 1357, 1630, 1703, 1786
PpsI	GAGTC	7 cut(s)	406, 727, 1019, 1357, 1630, 1703, 1786
PsiI	TTATAA	1 cut(s)	1661
Psp6I	CCWGG	4 cut(s)	40, 670, 1734, 1825
PspGI	CCWGG	4 cut(s)	40, 670, 1734, 1825
PspN4I	GGNNCC	2 cut(s)	727, 1199
PspPI	GGNCC	3 cut(s)	668, 1198, 1639
PspXI	VCTCGAGB	1 cut(s)	1301
PstI	CTGCAG	1 cut(s)	607
PstNI	CAGNNNCTG	2 cut(s)	538, 644
PsuI	RGATCY	1 cut(s)	787
PsyI	GACNNNGTC	1 cut(s)	1637
PvuII	CAGCTG	1 cut(s)	860
RigI	GGCCGGCC	1 cut(s)	300
RsaI	GTAC	4 cut(s)	617, 1075, 1217, 1229
RsaNI	GTAC	4 cut(s)	616, 1074, 1216, 1228
RseI	CAYNNNNRTG	2 cut(s)	456, 1566
SaqAI	TTAA	6 cut(s)	515, 1371, 1611, 1836, 1886, 1948
SatI	GCNGC	7 cut(s)	279, 282, 310, 331, 409, 606, 711
Sau3AI	GATC	9 cut(s)	221, 318, 787, 822, 1018, 1036, 1135, 1180, 1504
Sau96I	GGNCC	3 cut(s)	668, 1198, 1639
SchI	GAGTC	7 cut(s)	407, 727, 1019, 1358, 1631, 1703, 1786
ScrFI	CCNGG	4 cut(s)	42, 672, 1736, 1827
SexAI	ACCWGGT	1 cut(s)	40
SfaNI	GCATC	6 cut(s)	142, 151, 415, 481, 568, 863
SfcI	CTRYAG	2 cut(s)	603, 999
Sfr274I	CTCGAG	1 cut(s)	1301
SinI	GGWCC	1 cut(s)	1639
SlaI	CTCGAG	1 cut(s)	1301
SmiMI	CAYNNNNRTG	2 cut(s)	456, 1566
SmlI	CTYRAG	5 cut(s)	389, 437, 956, 1301, 1771
SmoI	CTYRAG	5 cut(s)	389, 437, 956, 1301, 1771
SseBI	AGGCCT	1 cut(s)	443
SspI	AATATT	1 cut(s)	1375
SspMI	CTAG	4 cut(s)	134, 500, 785, 1911
StuI	AGGCCT	1 cut(s)	443
StyD4I	CCNGG	4 cut(s)	40, 670, 1734, 1825
StyI	CCWWGG	1 cut(s)	721
TaaI	ACNGT	3 cut(s)	1000, 1078, 1821
TaiI	ACGT	2 cut(s)	1405, 1470
TaqI	TCGA	4 cut(s)	338, 825, 1302, 1320
TatI	WGTACW	3 cut(s)	615, 1073, 1215
TauI	GCSGC	4 cut(s)	281, 284, 312, 333
TfiI	GAWTC	3 cut(s)	335, 1085, 1586
Tru1I	TTAA	6 cut(s)	515, 1371, 1611, 1836, 1886, 1948
Tru9I	TTAA	6 cut(s)	515, 1371, 1611, 1836, 1886, 1948
TscAI	CASTG	2 cut(s)	1603, 1824
TseFI	GTSAC	3 cut(s)	981, 1676, 1718
TseI	GCWGC	3 cut(s)	408, 605, 710
Tsp45I	GTSAC	3 cut(s)	981, 1676, 1718
TspDTI	ATGAA	6 cut(s)	543, 965, 1466, 1550, 1563, 1924
TspRI	CASTG	2 cut(s)	1603, 1824
Tth111I	GACNNNGTC	1 cut(s)	1637
VpaK11BI	GGWCC	1 cut(s)	1639
XagI	CCTNNNNNAGG	1 cut(s)	1736
XapI	RAATTY	2 cut(s)	504, 623
XbaI	TCTAGA	1 cut(s)	784
XceI	RCATGY	1 cut(s)	1931
XcmI	CCANNNNNNNNNTGG	1 cut(s)	816
XhoI	CTCGAG	1 cut(s)	1301
XmnI	GAANNNNTTC	2 cut(s)	846, 1867
XspI	CTAG	4 cut(s)	134, 500, 785, 1911
Zsp2I	ATGCAT	3 cut(s)	549, 1241, 1856

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.