Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006168

Physical Location & Seq

Genomic Coordinates Forward (+)

1084099 .. 1088294

Gene Structure 4196 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG017200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGCATAATTCATTCGTGCAGGAATGGGGTTTAGATGCTAAGGACATCTCTATCAGCTCTGCAGCAGTAAAGTACACAGAATTCTTATTGGCAACAGCCTCTGGTAAAGTTGAAGGAGTAAAAGGCCCTGGTAAACTTGCAACTCCATTTGAAAGAACCAAAGTTGCTGCTTACACCCTTGGTGCCATGACTCCTTGCATGAGATTGTATGCCTTTATAGGTAAGGAGTTCAAGGCACTTCTAGATCCCAAAGACGGCACTCATCCATACAAGAAGTGGATCGACAATTATTCTTCCGAAAGTTTTCAGGCATCAGCTGTGCAAACTGAAGAGTTGCTGGATAAGCTAAGTGTCTCTTTGACTGGTGAGGAGCTTGACATCATTGAAAAGCTTTATCATCAAGCCATGAAACTTGAGATAGAGTTCTTTTCAGCCCAGTCACTTCTTCAACCAACTGTAGTTCCTCTTATCAAAGAGCATGACTCTGCAAAAGATCGCCTCATGATATTTTCAGATTTTGATTTGACTTGTACTGTTGTTGATTCATCTGCCATTTTGGCTGAAATTGCAATAGTAACTGCCCCAAAACCAGATCAAAATCAGTCTGAAGATCAGATTATGCGGATGTCGTCGGCTGATCTCAGAAATACATGGGGCCTTCTTTCCAAGCAGTACACAGAAGAGTACGAGCACTGCATAGAAAGCATTATTCCTACTAAAAGAGCGGAGTTTGTCTATAACAATCTGCATAAAGCGCTCGAGCAACTTTCAGAATTCGAGAAAAAGGCAAACAATAGAGTGATAGAGTCAGGGGTTCTGAAGGGTCTTAATATTGAAGATATAAAAAGAGCTGGTGAACGTCTCATTCTTCAAGATGGTTGTATTGATTTCTTCAAGAAAATTATCAAAAGTGACAACTTGAACGCAAATGTTCATGTTCTTTCGTATTGTTGGTGTGGTGATCTTATTAGGTCAGCTTTTTCATCAGGGGGTTTACATGAACCAAATGTTCATGCAAATGAGTTCACATTTGAAGAATCTATTTCCACTGGTAAAATTGTTAAGAAGGTGGAGTCTCCTATTGACAAGGTTCAAGCTTTTAGAGATATTATAAAAAGTTGTCAAAGTGACAGGAAGAACTTGACTATTTACATTGGAGACTCGGTGGGTGACTTACTATGCCTCCTGGAGGCAGATATAGGAATTGTCATAGGTTCAAGCTCAAGCCTGAGGAGAGTGGGAACTCAATTCGGTGTTTCTTTTGTTCCACTGTTTCCTGGTTTAGTTAAGAAACAAAAAGAATGCGTTGAAGGAAGGTCTTCTAATTGGAAAGGGTTAAGTGGCATTCTTTATACAGCATCTAGTTGGGCTGAAATTCATGCCTTCATTTTGGGGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006725 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009228 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0017144 GO:0018130 GO:0019438 GO:0034641 GO:0042131 GO:0042364 GO:0042578 GO:0042723 GO:0042724 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0072527 GO:0072528 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TENA_THI-4

Protein Analysis

466

Amino Acids

51.88

Weight (kDa)

5.61

Isoelectric Point (pI)

42.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TENA_THI-4	PF03070	55 - 145	3.2e-09	TENA/THI-4/PQQC family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32470
fragaria_vesca	FvH4_6g01520 FvH4_6g01520 FvH4_6g01520 FvH4_6g01520 FvH4_6g01520 FvH4_6g01520
malus_domestica	MD04G1232700.v1.1 MD12G1250300.v1.1
prunus_persica	Prupe.6G352500_v2.0.a1 Prupe.6G352500_v2.0.a1 Prupe.6G352500_v2.0.a1 Prupe.6G352500_v2.0.a1 Prupe.6G352500_v2.0.a1
pyrus_communis	pycom04g20600 pycom12g23040
rosa_chinensis	RchiOBHm_Chr3g0449211
rosa_laevigata	RLG00000025845
rosa_multiflora	Rmu_sc0004874.1_g000007
rosa_roxburghii	Rroxscaffold_6G00427250
rosa_rugosa	Rorug02G0618800 Rorug02G0618900
rosa_samantha	Rh3AG017100 Rh3BG017200 Rh3CG016200 Rh3DG017500
rosa_wichuraiana	Rw3G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1112
AccB1I	GGYRCC	1 cut(s)	182
AccBSI	CCGCTC	1 cut(s)	725
AciI	CCGC	2 cut(s)	622, 725
AclWI	GGATC	2 cut(s)	239, 287
AcsI	RAATTY	3 cut(s)	80, 773, 1374
AcuI	CTGAAG	3 cut(s)	348, 627, 839
AfaI	GTAC	4 cut(s)	74, 532, 674, 686
AfeI	AGCGCT	1 cut(s)	756
AfiI	CCNNNNNNNGG	2 cut(s)	254, 1189
AjnI	CCWGG	3 cut(s)	127, 1185, 1276
AluBI	AGCT	9 cut(s)	57, 317, 346, 373, 391, 851, 977, 1097, 1221
AluI	AGCT	9 cut(s)	57, 317, 346, 373, 391, 851, 977, 1097, 1221
Alw21I	GWGCWC	1 cut(s)	693
Alw26I	GTCTC	4 cut(s)	358, 866, 1080, 1152
AlwI	GGATC	2 cut(s)	239, 287
AlwNI	CAGNNNCTG	1 cut(s)	101
Ama87I	CYCGRG	1 cut(s)	758
Aor51HI	AGCGCT	1 cut(s)	756
AoxI	GGCC	2 cut(s)	124, 655
ApeKI	GCWGC	2 cut(s)	62, 167
ApoI	RAATTY	3 cut(s)	80, 773, 1374
Asp700I	GAANNNNTTC	2 cut(s)	303, 1318
AspLEI	GCGC	1 cut(s)	757
AspS9I	GGNCC	2 cut(s)	125, 655
AsuHPI	GGTGA	4 cut(s)	377, 866, 971, 1181
AvaI	CYCGRG	1 cut(s)	758
AxyI	CCTNAGG	1 cut(s)	1229
BanI	GGYRCC	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	1311
Bbv12I	GWGCWC	1 cut(s)	693
BbvI	GCAGC	2 cut(s)	74, 154
BccI	CCATC	1 cut(s)	869
BceAI	ACGGC	1 cut(s)	271
BciT130I	CCWGG	3 cut(s)	129, 1187, 1278
BcoDI	GTCTC	4 cut(s)	358, 866, 1080, 1152
BfaI	CTAG	2 cut(s)	242, 1362
BfmI	CTRYAG	2 cut(s)	60, 456
BfoI	RGCGCY	1 cut(s)	758
BglI	GCCNNNNNGGC	1 cut(s)	557
BisI	GCNGC	2 cut(s)	63, 168
BlsI	GCNGC	2 cut(s)	64, 169
Bme1390I	CCNGG	3 cut(s)	129, 1187, 1278
BmeT110I	CYCGRG	1 cut(s)	758
BmgT120I	GGNCC	2 cut(s)	125, 655
BmiI	GGNNCC	2 cut(s)	184, 656
BmrFI	CCNGG	3 cut(s)	129, 1187, 1278
BmrI	ACTGGG	1 cut(s)	430
BmsI	GCATC	3 cut(s)	25, 320, 1367
BmuI	ACTGGG	1 cut(s)	430
BpiI	GAAGAC	1 cut(s)	1311
BplI	GAGNNNNNCTC	2 cut(s)	467, 499
BpmI	CTGGAG	1 cut(s)	1208
Bpu10I	CCTNAGC	1 cut(s)	39
BpuEI	CTTGAG	2 cut(s)	434, 1207
BsaBI	GATNNNNATC	1 cut(s)	597
BsaJI	CCNNGG	2 cut(s)	127, 178
BsaXI	ACNNNNNCTCC	4 cut(s)	1149, 1167, 1179, 1197
Bsc4I	CCNNNNNNNGG	2 cut(s)	254, 1189
Bse1I	ACTGG	3 cut(s)	367, 436, 1054
Bse21I	CCTNAGG	1 cut(s)	1229
Bse8I	GATNNNNATC	1 cut(s)	597
BseBI	CCWGG	3 cut(s)	129, 1187, 1278
BseDI	CCNNGG	2 cut(s)	127, 178
BseGI	GGATG	2 cut(s)	262, 630
BseJI	GATNNNNATC	1 cut(s)	597
BseLI	CCNNNNNNNGG	2 cut(s)	254, 1189
BseMII	CTCAG	2 cut(s)	655, 1220
BseNI	ACTGG	3 cut(s)	367, 436, 1054
BseRI	GAGGAG	2 cut(s)	383, 1246
BseXI	GCAGC	2 cut(s)	74, 154
BsgI	GTGCAG	1 cut(s)	38
BshFI	GGCC	2 cut(s)	126, 657
BshNI	GGYRCC	1 cut(s)	182
BsiHKAI	GWGCWC	1 cut(s)	693
BsiHKCI	CYCGRG	1 cut(s)	758
BslI	CCNNNNNNNGG	2 cut(s)	254, 1189
BsmAI	GTCTC	4 cut(s)	358, 866, 1080, 1152
BsmBI	CGTCTC	1 cut(s)	866
BsmI	GAATGC	2 cut(s)	1307, 1344
BsnI	GGCC	2 cut(s)	126, 657
BsoBI	CYCGRG	1 cut(s)	758
Bsp1286I	GDGCHC	1 cut(s)	693
Bsp143I	GATC	7 cut(s)	244, 279, 493, 592, 610, 637, 961
BspACI	CCGC	2 cut(s)	622, 725
BspANI	GGCC	2 cut(s)	126, 657
BspCNI	CTCAG	2 cut(s)	654, 1221
BspHI	TCATGA	1 cut(s)	501
BspLI	GGNNCC	2 cut(s)	184, 656
BspMAI	CTGCAG	1 cut(s)	64
BspPI	GGATC	2 cut(s)	239, 287
BspT107I	GGYRCC	1 cut(s)	182
BsrBI	CCGCTC	1 cut(s)	725
BsrI	ACTGG	3 cut(s)	367, 436, 1054
BssECI	CCNNGG	2 cut(s)	127, 178
BssMI	GATC	7 cut(s)	244, 279, 493, 592, 610, 637, 961
BssT1I	CCWWGG	1 cut(s)	178
Bst2UI	CCWGG	3 cut(s)	129, 1187, 1278
Bst4CI	ACNGT	3 cut(s)	457, 535, 1272
Bst6I	CTCTTC	2 cut(s)	324, 675
BstDEI	CTNAG	4 cut(s)	39, 347, 641, 1229
BstENI	CCTNNNNNAGG	1 cut(s)	1187
BstF5I	GGATG	2 cut(s)	262, 630
BstH2I	RGCGCY	1 cut(s)	758
BstHHI	GCGC	1 cut(s)	757
BstKTI	GATC	7 cut(s)	247, 282, 496, 595, 613, 640, 964
BstMAI	GTCTC	4 cut(s)	358, 866, 1080, 1152
BstMBI	GATC	7 cut(s)	244, 279, 493, 592, 610, 637, 961
BstMWI	GCNNNNNNNGC	5 cut(s)	343, 557, 566, 702, 754
BstNI	CCWGG	3 cut(s)	129, 1187, 1278
BstSCI	CCNGG	3 cut(s)	127, 1185, 1276
BstSFI	CTRYAG	2 cut(s)	60, 456
BstV1I	GCAGC	2 cut(s)	74, 154
BstV2I	GAAGAC	1 cut(s)	1311
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
Bsu36I	CCTNAGG	1 cut(s)	1229
BsuRI	GGCC	2 cut(s)	126, 657
BtsCI	GGATG	2 cut(s)	262, 630
BtsI	GCAGTG	1 cut(s)	691
BtsIMutI	CAGTG	3 cut(s)	691, 1047, 1268
CaiI	CAGNNNCTG	1 cut(s)	101
CciI	TCATGA	1 cut(s)	501
CfoI	GCGC	1 cut(s)	757
Cfr13I	GGNCC	2 cut(s)	125, 655
Csp6I	GTAC	4 cut(s)	73, 531, 673, 685
CviQI	GTAC	4 cut(s)	73, 531, 673, 685
DdeI	CTNAG	4 cut(s)	39, 347, 641, 1229
DpnI	GATC	7 cut(s)	246, 281, 495, 594, 612, 639, 963
DpnII	GATC	7 cut(s)	244, 279, 493, 592, 610, 637, 961
Eam1104I	CTCTTC	2 cut(s)	324, 675
EarI	CTCTTC	2 cut(s)	324, 675
Eco130I	CCWWGG	1 cut(s)	178
Eco47III	AGCGCT	1 cut(s)	756
Eco57I	CTGAAG	3 cut(s)	348, 627, 839
Eco81I	CCTNAGG	1 cut(s)	1229
Eco88I	CYCGRG	1 cut(s)	758
EcoNI	CCTNNNNNAGG	1 cut(s)	1187
EcoO109I	RGGNCCY	2 cut(s)	125, 655
EcoRI	GAATTC	2 cut(s)	80, 773
EcoRII	CCWGG	3 cut(s)	127, 1185, 1276
EcoT14I	CCWWGG	1 cut(s)	178
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	178
Esp3I	CGTCTC	1 cut(s)	866
FalI	AAGNNNNNCTT	2 cut(s)	340, 372
Fnu4HI	GCNGC	2 cut(s)	63, 168
FokI	GGATG	2 cut(s)	249, 637
Fsp4HI	GCNGC	2 cut(s)	63, 168
FspBI	CTAG	2 cut(s)	242, 1362
GlaI	GCGC	1 cut(s)	756
GluI	GCNGC	2 cut(s)	63, 168
GsuI	CTGGAG	1 cut(s)	1208
HaeII	RGCGCY	1 cut(s)	758
HaeIII	GGCC	2 cut(s)	126, 657
HhaI	GCGC	1 cut(s)	757
Hin6I	GCGC	1 cut(s)	755
HinP1I	GCGC	1 cut(s)	755
HindIII	AAGCTT	2 cut(s)	389, 1095
HinfI	GANTC	7 cut(s)	190, 482, 542, 806, 1037, 1073, 1160
HphI	GGTGA	4 cut(s)	377, 866, 971, 1181
Hpy166II	GTNNAC	6 cut(s)	75, 134, 675, 857, 995, 1026
Hpy188I	TCNGA	7 cut(s)	298, 514, 607, 615, 644, 772, 819
Hpy188III	TCNNGA	5 cut(s)	242, 502, 778, 872, 895
Hpy8I	GTNNAC	6 cut(s)	75, 134, 675, 857, 995, 1026
Hpy99I	CGWCG	1 cut(s)	634
HpyAV	CCTTC	7 cut(s)	107, 668, 814, 1060, 1304, 1308, 1393
HpyCH4III	ACNGT	3 cut(s)	457, 535, 1272
HpyCH4IV	ACGT	1 cut(s)	859
HpyF10VI	GCNNNNNNNGC	5 cut(s)	343, 557, 566, 702, 754
HpyF3I	CTNAG	4 cut(s)	39, 347, 641, 1229
HpySE526I	ACGT	1 cut(s)	859
HspAI	GCGC	1 cut(s)	755
Kzo9I	GATC	7 cut(s)	244, 279, 493, 592, 610, 637, 961
LmnI	GCTCC	1 cut(s)	370
Lsp1109I	GCAGC	2 cut(s)	74, 154
LweI	GCATC	3 cut(s)	25, 320, 1367
MaeI	CTAG	2 cut(s)	242, 1362
MaeII	ACGT	1 cut(s)	859
MaeIII	GTNAC	5 cut(s)	438, 574, 911, 1127, 1169
MalI	GATC	7 cut(s)	246, 281, 495, 594, 612, 639, 963
MbiI	CCGCTC	1 cut(s)	725
MboI	GATC	7 cut(s)	244, 279, 493, 592, 610, 637, 961
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	1 cut(s)	693
MlyI	GAGTC	5 cut(s)	184, 476, 815, 1082, 1154
MnlI	CCTC	7 cut(s)	109, 361, 474, 509, 1183, 1193, 1224
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	2 cut(s)	303, 1318
MseI	TTAA	5 cut(s)	828, 1062, 1287, 1337, 1399
MslI	CAYNNNNRTG	1 cut(s)	1017
MspA1I	CMGCKG	1 cut(s)	317
MspR9I	CCNGG	3 cut(s)	129, 1187, 1278
Mva1269I	GAATGC	2 cut(s)	1307, 1344
MvaI	CCWGG	3 cut(s)	129, 1187, 1278
MwoI	GCNNNNNNNGC	5 cut(s)	343, 557, 566, 702, 754
NdeII	GATC	7 cut(s)	244, 279, 493, 592, 610, 637, 961
NlaIV	GGNNCC	2 cut(s)	184, 656
NmuCI	GTSAC	4 cut(s)	438, 911, 1127, 1169
NsiI	ATGCAT	1 cut(s)	6
PaeR7I	CTCGAG	1 cut(s)	758
PagI	TCATGA	1 cut(s)	501
PctI	GAATGC	2 cut(s)	1307, 1344
PdmI	GAANNNNTTC	2 cut(s)	303, 1318
PfeI	GAWTC	2 cut(s)	542, 1037
PfoI	TCCNGGA	1 cut(s)	1185
PkrI	GCNGC	2 cut(s)	64, 169
PleI	GAGTC	5 cut(s)	184, 476, 814, 1081, 1154
PpsI	GAGTC	5 cut(s)	184, 476, 814, 1081, 1154
PsiI	TTATAA	1 cut(s)	1112
Psp6I	CCWGG	3 cut(s)	127, 1185, 1276
PspGI	CCWGG	3 cut(s)	127, 1185, 1276
PspN4I	GGNNCC	2 cut(s)	184, 656
PspPI	GGNCC	2 cut(s)	125, 655
PspXI	VCTCGAGB	1 cut(s)	758
PstI	CTGCAG	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	244
PvuII	CAGCTG	1 cut(s)	317
RsaI	GTAC	4 cut(s)	74, 532, 674, 686
RsaNI	GTAC	4 cut(s)	73, 531, 673, 685
RseI	CAYNNNNRTG	1 cut(s)	1017
SaqAI	TTAA	5 cut(s)	828, 1062, 1287, 1337, 1399
SatI	GCNGC	2 cut(s)	63, 168
Sau3AI	GATC	7 cut(s)	244, 279, 493, 592, 610, 637, 961
Sau96I	GGNCC	2 cut(s)	125, 655
SchI	GAGTC	5 cut(s)	184, 476, 815, 1082, 1154
ScrFI	CCNGG	3 cut(s)	129, 1187, 1278
SduI	GDGCHC	1 cut(s)	693
SfaNI	GCATC	3 cut(s)	25, 320, 1367
SfcI	CTRYAG	2 cut(s)	60, 456
Sfr274I	CTCGAG	1 cut(s)	758
SlaI	CTCGAG	1 cut(s)	758
SmiMI	CAYNNNNRTG	1 cut(s)	1017
SmlI	CTYRAG	3 cut(s)	413, 758, 1222
SmoI	CTYRAG	3 cut(s)	413, 758, 1222
SsiI	CCGC	2 cut(s)	622, 725
SspI	AATATT	1 cut(s)	832
SspMI	CTAG	2 cut(s)	242, 1362
StyD4I	CCNGG	3 cut(s)	127, 1185, 1276
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	3 cut(s)	457, 535, 1272
TaiI	ACGT	1 cut(s)	862
TaqI	TCGA	3 cut(s)	282, 759, 777
TatI	WGTACW	3 cut(s)	72, 530, 672
TfiI	GAWTC	2 cut(s)	542, 1037
Tru1I	TTAA	5 cut(s)	828, 1062, 1287, 1337, 1399
Tru9I	TTAA	5 cut(s)	828, 1062, 1287, 1337, 1399
TscAI	CASTG	3 cut(s)	698, 1054, 1275
TseFI	GTSAC	4 cut(s)	438, 911, 1127, 1169
TseI	GCWGC	2 cut(s)	62, 167
Tsp45I	GTSAC	4 cut(s)	438, 911, 1127, 1169
TspDTI	ATGAA	8 cut(s)	422, 534, 923, 972, 1001, 1014, 1367, 1375
TspRI	CASTG	3 cut(s)	698, 1054, 1275
XagI	CCTNNNNNAGG	1 cut(s)	1187
XapI	RAATTY	3 cut(s)	80, 773, 1374
XbaI	TCTAGA	1 cut(s)	241
XcmI	CCANNNNNNNNNTGG	1 cut(s)	273
XhoI	CTCGAG	1 cut(s)	758
XmnI	GAANNNNTTC	2 cut(s)	303, 1318
XspI	CTAG	2 cut(s)	242, 1362
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.