RLG00000025845

TENA/THI-4/PQQC family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
48659751 .. 48663510
3760 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025845

Sequence Viewer

Length: 1665 bp
ATGGAAACCTGGCTACACATCCCGACTCAAAATAGTAGCATACTCTGCCACTTTCACACCCTCCACCACCACCAGTTTTCTCCTCCATTGATGCGCTCACTCTTCCCTCCAAACCCAATCAAAACCCCCCAAACCCTCTTCACCTCCCTCCGATCCCTCTCCCTCTCCTCAATGGCCATGCCCCCTCCCAAGTCGGCCATCCCCTCCGGCGCCGCCGACAACGAGTTTTCTCAGCAACCAAATGGAGTTAAAGTATTTTGGATATATTTATGTGCATTAAATGAGGAATGGGGTTTAGATGCTAAGGACATCTCTATCAGCTCTGCAGCTGTAAAGTACACAGAATTCTTATTGGCAACAGCCTCTGGTAAAGTTGAAGGAGTAAAAGGCCCTGGTAAACTTGCGACTCCATTTGAAAGAACCAAAGTTGCTGCTTACACCCTTGGTGCCATGACTCCTTGCATGAGATTGTATGCCTTTATAGGTAAGGAGTTCAAGGCACTTCTAGATCCCAAAGACGGCGCTCATCCATACAAGAAATGGATCGACAATTATTCTTCCGAAAGTTTTCAGGCATCAGCTGTGCAAACTGAAGAGTTGCTGGATAAGCTAAGTGTCTCTTTGACTGGCGAGGAGCTTGACATCATTGAAAAGCTTTATCATCAAGCCATGAAACTTGAGATAGAGTTCTTTTCAGCCCAGTCACTTCTTCAACCAACTGTAGTTCCTCTTATCAAAGAGCATGACTCTGCAAAAGATCGCCTCATGATATTTTCAGATTTTGATTTGACTTGTACTGTTGTTGATTCCTCTGCCATTTTGGCTGAAATTGCAATATTAACTGCCCCAAAACCAGATCAAAATCAATCTGAAGATCAGATTACGCGGATGTCATCGGCTGATCTCAGAAATACATGGGGCCTTCTTTCCAAGCAGTACACAGAAGAGTACGAGCAATGCATAGAAAGCATTATTCCTACTAAAAGAGCGGAGTTTGTCTATAACAATCTGCATAAAGCGCTTGAGCAACTTTCAGAGTTCGAGAAAAAGGCAAACAATAGAGTGATAGAGTCAGGGGTTCTGAAGGGTCTTAATATTGAAGATATAAAAAGAGCTGGTGAACGTCTCATTCTTCAAGATGGTTGTATTGATTTCTTCAAGAAAATTATCAAAAGTGATAACTTGAACGCAAATGTTCATGTTCTTTCGTATTGTTGGTGTGGTGATCTTATTAGGTCAGCTTTTTCATCAGGGGGTTTACATGAACCAAATGTTCATGCAAATGAGTTCACATTTGAAGAATCTGTTTCCACTGGTAAAATTGTTAAGAAGGTGGAGTCTCCTATTGACAAGGTTCAAGCTTTCAGAGATATTATAAAAAGTTGTCAAAGTGACAGGAAGAACTTGACTATTTACATTGGAGACTCGGTGGGTGACTTACTATGCCTCCTGGAGGCAGATATAGGAATTGTCATAGGGTCAAGCTCAAGCCTGAGGAGAGTGGGGACTCAATTCGGTGTTTCTTTTGTTCCACTGTTTCCTGGTTTAGTTAAGAAACAAAAAGAATGCGTTGAAGGAAGGTCTTCTAATTGGAAAGGGTTAACTGGCATTCTTTATACAGCATCTAGTTGGGCTGAAATACATGCCTTCATTTTGGGGTATTAA

Protein Analysis

555

Amino Acids

61.66

Weight (kDa)

5.92

Isoelectric Point (pI)

44.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TENA_THI-4 PF03070 143 - 233 4.9e-09 TENA/THI-4/PQQC family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1376
AccB1I GGYRCC 2 cut(s) 209, 446
AccBSI CCGCTC 1 cut(s) 989
AccII CGCG 1 cut(s) 886
AciI CCGC 3 cut(s) 213, 886, 989
AclWI GGATC 3 cut(s) 147, 503, 551
AcoI YGGCCR 2 cut(s) 174, 195
AcsI RAATTY 1 cut(s) 344
AcuI CTGAAG 3 cut(s) 612, 891, 1103
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 4 cut(s) 338, 796, 938, 950
AfeI AGCGCT 1 cut(s) 1020
AfiI CCNNNNNNNGG 2 cut(s) 518, 1453
AjnI CCWGG 4 cut(s) 8, 391, 1449, 1540
Alw26I GTCTC 4 cut(s) 622, 1130, 1344, 1416
AlwI GGATC 3 cut(s) 147, 503, 551
AlwNI CAGNNNCTG 1 cut(s) 365
Aor51HI AGCGCT 1 cut(s) 1020
AoxI GGCC 4 cut(s) 174, 195, 388, 919
ApeKI GCWGC 2 cut(s) 326, 431
ApoI RAATTY 1 cut(s) 344
Asp700I GAANNNNTTC 2 cut(s) 567, 1582
AspLEI GCGC 4 cut(s) 96, 212, 524, 1021
AspS9I GGNCC 2 cut(s) 389, 919
AsuHPI GGTGA 4 cut(s) 133, 1130, 1235, 1445
AxyI CCTNAGG 1 cut(s) 1493
BalI TGGCCA 1 cut(s) 176
BanI GGYRCC 2 cut(s) 209, 446
BbsI GAAGAC 1 cut(s) 1575
BbvI GCAGC 2 cut(s) 338, 418
BccI CCATC 2 cut(s) 206, 1133
BceAI ACGGC 1 cut(s) 535
BciT130I CCWGG 4 cut(s) 10, 393, 1451, 1542
BcoDI GTCTC 4 cut(s) 622, 1130, 1344, 1416
BfaI CTAG 2 cut(s) 506, 1626
BfmI CTRYAG 2 cut(s) 324, 720
BfoI RGCGCY 3 cut(s) 213, 525, 1022
BglI GCCNNNNNGGC 1 cut(s) 821
BisI GCNGC 3 cut(s) 213, 327, 432
BlsI GCNGC 3 cut(s) 214, 328, 433
Bme1390I CCNGG 4 cut(s) 10, 393, 1451, 1542
BmgT120I GGNCC 2 cut(s) 389, 919
BmiI GGNNCC 3 cut(s) 211, 448, 920
BmrFI CCNGG 4 cut(s) 10, 393, 1451, 1542
BmrI ACTGGG 1 cut(s) 694
BmsI GCATC 4 cut(s) 81, 289, 584, 1631
BmuI ACTGGG 1 cut(s) 694
BpiI GAAGAC 1 cut(s) 1575
BplI GAGNNNNNCTC 2 cut(s) 731, 763
BpmI CTGGAG 1 cut(s) 1472
Bpu10I CCTNAGC 1 cut(s) 303
BpuEI CTTGAG 3 cut(s) 698, 1043, 1471
BsaBI GATNNNNATC 1 cut(s) 861
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 391, 442
BsaXI ACNNNNNCTCC 6 cut(s) 237, 267, 1413, 1431, 1443, 1461
Bsc4I CCNNNNNNNGG 2 cut(s) 518, 1453
Bse1I ACTGG 5 cut(s) 73, 631, 700, 1318, 1609
Bse21I CCTNAGG 1 cut(s) 1493
Bse3DI GCAATG 1 cut(s) 962
Bse8I GATNNNNATC 1 cut(s) 861
BseBI CCWGG 4 cut(s) 10, 393, 1451, 1542
BseDI CCNNGG 2 cut(s) 391, 442
BseGI GGATG 4 cut(s) 18, 198, 526, 894
BseJI GATNNNNATC 1 cut(s) 861
BseLI CCNNNNNNNGG 2 cut(s) 518, 1453
BseMI GCAATG 1 cut(s) 962
BseMII CTCAG 3 cut(s) 245, 919, 1484
BseNI ACTGG 5 cut(s) 73, 631, 700, 1318, 1609
BseRI GAGGAG 4 cut(s) 72, 157, 647, 1510
BseXI GCAGC 2 cut(s) 338, 418
Bsh1236I CGCG 1 cut(s) 886
BshFI GGCC 4 cut(s) 176, 197, 390, 921
BshNI GGYRCC 2 cut(s) 209, 446
BsiSI CCGG 1 cut(s) 207
BslFI GGGAC 1 cut(s) 1519
BslI CCNNNNNNNGG 2 cut(s) 518, 1453
BsmAI GTCTC 4 cut(s) 622, 1130, 1344, 1416
BsmBI CGTCTC 1 cut(s) 1130
BsmFI GGGAC 1 cut(s) 1519
BsmI GAATGC 2 cut(s) 1571, 1608
BsnI GGCC 4 cut(s) 176, 197, 390, 921
Bsp143I GATC 8 cut(s) 152, 508, 543, 757, 856, 874, 901, 1225
BspACI CCGC 3 cut(s) 213, 886, 989
BspANI GGCC 4 cut(s) 176, 197, 390, 921
BspCNI CTCAG 3 cut(s) 244, 918, 1485
BspFNI CGCG 1 cut(s) 886
BspHI TCATGA 1 cut(s) 765
BspLI GGNNCC 3 cut(s) 211, 448, 920
BspMAI CTGCAG 1 cut(s) 328
BspPI GGATC 3 cut(s) 147, 503, 551
BspT107I GGYRCC 2 cut(s) 209, 446
BsrBI CCGCTC 1 cut(s) 989
BsrDI GCAATG 1 cut(s) 962
BsrI ACTGG 5 cut(s) 73, 631, 700, 1318, 1609
BssECI CCNNGG 2 cut(s) 391, 442
BssMI GATC 8 cut(s) 152, 508, 543, 757, 856, 874, 901, 1225
BssNI GRCGYC 1 cut(s) 210
BssT1I CCWWGG 1 cut(s) 442
Bst2UI CCWGG 4 cut(s) 10, 393, 1451, 1542
Bst4CI ACNGT 3 cut(s) 721, 799, 1536
Bst6I CTCTTC 4 cut(s) 107, 143, 588, 939
BstACI GRCGYC 1 cut(s) 210
BstAPI GCANNNNNTGC 1 cut(s) 45
BstDEI CTNAG 5 cut(s) 231, 303, 611, 905, 1493
BstENI CCTNNNNNAGG 1 cut(s) 1451
BstF5I GGATG 4 cut(s) 18, 198, 526, 894
BstFNI CGCG 1 cut(s) 886
BstH2I RGCGCY 3 cut(s) 213, 525, 1022
BstHHI GCGC 4 cut(s) 96, 212, 524, 1021
BstKTI GATC 8 cut(s) 155, 511, 546, 760, 859, 877, 904, 1228
BstMAI GTCTC 4 cut(s) 622, 1130, 1344, 1416
BstMBI GATC 8 cut(s) 152, 508, 543, 757, 856, 874, 901, 1225
BstMWI GCNNNNNNNGC 6 cut(s) 45, 607, 821, 830, 966, 1018
BstNI CCWGG 4 cut(s) 10, 393, 1451, 1542
BstNSI RCATGY 1 cut(s) 1646
BstSCI CCNGG 4 cut(s) 8, 391, 1449, 1540
BstSFI CTRYAG 2 cut(s) 324, 720
BstUI CGCG 1 cut(s) 886
BstV1I GCAGC 2 cut(s) 338, 418
BstV2I GAAGAC 1 cut(s) 1575
BstX2I RGATCY 1 cut(s) 508
BstYI RGATCY 1 cut(s) 508
Bsu36I CCTNAGG 1 cut(s) 1493
BsuRI GGCC 4 cut(s) 176, 197, 390, 921
BtsCI GGATG 4 cut(s) 18, 198, 526, 894
BtsIMutI CAGTG 2 cut(s) 1311, 1532
CaiI CAGNNNCTG 1 cut(s) 365
CciI TCATGA 1 cut(s) 765
CfoI GCGC 4 cut(s) 96, 212, 524, 1021
Cfr13I GGNCC 2 cut(s) 389, 919
Csp6I GTAC 4 cut(s) 337, 795, 937, 949
CviQI GTAC 4 cut(s) 337, 795, 937, 949
DdeI CTNAG 5 cut(s) 231, 303, 611, 905, 1493
DinI GGCGCC 1 cut(s) 211
DpnI GATC 8 cut(s) 154, 510, 545, 759, 858, 876, 903, 1227
DpnII GATC 8 cut(s) 152, 508, 543, 757, 856, 874, 901, 1225
EaeI YGGCCR 2 cut(s) 174, 195
Eam1104I CTCTTC 4 cut(s) 107, 143, 588, 939
EarI CTCTTC 4 cut(s) 107, 143, 588, 939
Eco130I CCWWGG 1 cut(s) 442
Eco47III AGCGCT 1 cut(s) 1020
Eco57I CTGAAG 3 cut(s) 612, 891, 1103
Eco81I CCTNAGG 1 cut(s) 1493
EcoNI CCTNNNNNAGG 1 cut(s) 1451
EcoO109I RGGNCCY 2 cut(s) 389, 919
EcoRI GAATTC 1 cut(s) 344
EcoRII CCWGG 4 cut(s) 8, 391, 1449, 1540
EcoT14I CCWWGG 1 cut(s) 442
EcoT22I ATGCAT 1 cut(s) 962
EgeI GGCGCC 1 cut(s) 211
EheI GGCGCC 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 442
Esp3I CGTCTC 1 cut(s) 1130
FalI AAGNNNNNCTT 2 cut(s) 604, 636
FaqI GGGAC 1 cut(s) 1519
Fnu4HI GCNGC 3 cut(s) 213, 327, 432
FokI GGATG 4 cut(s) 5, 185, 513, 901
Fsp4HI GCNGC 3 cut(s) 213, 327, 432
FspBI CTAG 2 cut(s) 506, 1626
GlaI GCGC 4 cut(s) 95, 211, 523, 1020
GluI GCNGC 3 cut(s) 213, 327, 432
GsuI CTGGAG 1 cut(s) 1472
HaeII RGCGCY 3 cut(s) 213, 525, 1022
HaeIII GGCC 4 cut(s) 176, 197, 390, 921
HapII CCGG 1 cut(s) 207
HhaI GCGC 4 cut(s) 96, 212, 524, 1021
Hin1I GRCGYC 1 cut(s) 210
Hin6I GCGC 4 cut(s) 94, 210, 522, 1019
HinP1I GCGC 4 cut(s) 94, 210, 522, 1019
HincII GTYRAC 1 cut(s) 1602
HindII GTYRAC 1 cut(s) 1602
HindIII AAGCTT 2 cut(s) 653, 1359
HpaI GTTAAC 1 cut(s) 1602
HpaII CCGG 1 cut(s) 207
HphI GGTGA 4 cut(s) 133, 1130, 1235, 1445
Hpy166II GTNNAC 7 cut(s) 339, 398, 939, 1121, 1259, 1290, 1602
Hpy188I TCNGA 9 cut(s) 152, 562, 778, 871, 879, 908, 1036, 1083, 1367
Hpy188III TCNNGA 6 cut(s) 22, 506, 766, 1042, 1136, 1159
Hpy8I GTNNAC 7 cut(s) 339, 398, 939, 1121, 1259, 1290, 1602
HpyAV CCTTC 7 cut(s) 371, 932, 1078, 1324, 1568, 1572, 1657
HpyCH4III ACNGT 3 cut(s) 721, 799, 1536
HpyCH4IV ACGT 1 cut(s) 1123
HpyCH4V TGCA 9 cut(s) 275, 326, 462, 586, 752, 833, 960, 1012, 1280
HpyF10VI GCNNNNNNNGC 6 cut(s) 45, 607, 821, 830, 966, 1018
HpyF3I CTNAG 5 cut(s) 231, 303, 611, 905, 1493
HpySE526I ACGT 1 cut(s) 1123
Hsp92I GRCGYC 1 cut(s) 210
HspAI GCGC 4 cut(s) 94, 210, 522, 1019
KasI GGCGCC 1 cut(s) 209
KspAI GTTAAC 1 cut(s) 1602
Kzo9I GATC 8 cut(s) 152, 508, 543, 757, 856, 874, 901, 1225
LmnI GCTCC 1 cut(s) 634
Lsp1109I GCAGC 2 cut(s) 338, 418
LweI GCATC 4 cut(s) 81, 289, 584, 1631
MaeI CTAG 2 cut(s) 506, 1626
MaeII ACGT 1 cut(s) 1123
MaeIII GTNAC 3 cut(s) 702, 1391, 1433
MalI GATC 8 cut(s) 154, 510, 545, 759, 858, 876, 903, 1227
MbiI CCGCTC 1 cut(s) 989
MboI GATC 8 cut(s) 152, 508, 543, 757, 856, 874, 901, 1225
MflI RGATCY 1 cut(s) 508
MlsI TGGCCA 1 cut(s) 176
MluCI AATT 8 cut(s) 344, 550, 828, 1164, 1320, 1467, 1511, 1588
MluNI TGGCCA 1 cut(s) 176
Mly113I GGCGCC 1 cut(s) 210
MlyI GAGTC 8 cut(s) 19, 400, 448, 740, 1079, 1346, 1418, 1501
Mox20I TGGCCA 1 cut(s) 176
Mph1103I ATGCAT 1 cut(s) 962
MroXI GAANNNNTTC 2 cut(s) 567, 1582
MscI TGGCCA 1 cut(s) 176
MseI TTAA 8 cut(s) 249, 278, 839, 1092, 1326, 1551, 1601, 1663
MslI CAYNNNNRTG 1 cut(s) 1281
Msp20I TGGCCA 1 cut(s) 176
MspA1I CMGCKG 2 cut(s) 329, 581
MspI CCGG 1 cut(s) 207
MspR9I CCNGG 4 cut(s) 10, 393, 1451, 1542
Mva1269I GAATGC 2 cut(s) 1571, 1608
MvaI CCWGG 4 cut(s) 10, 393, 1451, 1542
MvnI CGCG 1 cut(s) 886
MwoI GCNNNNNNNGC 6 cut(s) 45, 607, 821, 830, 966, 1018
NarI GGCGCC 1 cut(s) 210
NdeII GATC 8 cut(s) 152, 508, 543, 757, 856, 874, 901, 1225
NlaIV GGNNCC 3 cut(s) 211, 448, 920
NmuCI GTSAC 3 cut(s) 702, 1391, 1433
NsiI ATGCAT 1 cut(s) 962
NspI RCATGY 1 cut(s) 1646
PagI TCATGA 1 cut(s) 765
PctI GAATGC 2 cut(s) 1571, 1608
PdmI GAANNNNTTC 2 cut(s) 567, 1582
PfeI GAWTC 2 cut(s) 806, 1301
PfoI TCCNGGA 1 cut(s) 1449
PkrI GCNGC 3 cut(s) 214, 328, 433
PleI GAGTC 8 cut(s) 19, 400, 448, 740, 1078, 1345, 1418, 1501
PluTI GGCGCC 1 cut(s) 213
PpsI GAGTC 8 cut(s) 19, 400, 448, 740, 1078, 1345, 1418, 1501
PsiI TTATAA 1 cut(s) 1376
Psp6I CCWGG 4 cut(s) 8, 391, 1449, 1540
PspGI CCWGG 4 cut(s) 8, 391, 1449, 1540
PspN4I GGNNCC 3 cut(s) 211, 448, 920
PspPI GGNCC 2 cut(s) 389, 919
PstI CTGCAG 1 cut(s) 328
PstNI CAGNNNCTG 1 cut(s) 365
PsuI RGATCY 1 cut(s) 508
PvuII CAGCTG 2 cut(s) 329, 581
RsaI GTAC 4 cut(s) 338, 796, 938, 950
RsaNI GTAC 4 cut(s) 337, 795, 937, 949
RseI CAYNNNNRTG 1 cut(s) 1281
SaqAI TTAA 8 cut(s) 249, 278, 839, 1092, 1326, 1551, 1601, 1663
SatI GCNGC 3 cut(s) 213, 327, 432
Sau3AI GATC 8 cut(s) 152, 508, 543, 757, 856, 874, 901, 1225
Sau96I GGNCC 2 cut(s) 389, 919
SchI GAGTC 8 cut(s) 19, 400, 448, 740, 1079, 1346, 1418, 1501
ScrFI CCNGG 4 cut(s) 10, 393, 1451, 1542
SfaNI GCATC 4 cut(s) 81, 289, 584, 1631
SfcI CTRYAG 2 cut(s) 324, 720
SfoI GGCGCC 1 cut(s) 211
SmiMI CAYNNNNRTG 1 cut(s) 1281
SmlI CTYRAG 3 cut(s) 677, 1022, 1486
SmoI CTYRAG 3 cut(s) 677, 1022, 1486
Sse9I AATT 8 cut(s) 344, 550, 828, 1164, 1320, 1467, 1511, 1588
SsiI CCGC 3 cut(s) 213, 886, 989
SspDI GGCGCC 1 cut(s) 209
SspI AATATT 2 cut(s) 837, 1096
SspMI CTAG 2 cut(s) 506, 1626
StyD4I CCNGG 4 cut(s) 8, 391, 1449, 1540
StyI CCWWGG 1 cut(s) 442
TaaI ACNGT 3 cut(s) 721, 799, 1536
TaiI ACGT 1 cut(s) 1126
TaqI TCGA 2 cut(s) 546, 1041
TasI AATT 8 cut(s) 344, 550, 828, 1164, 1320, 1467, 1511, 1588
TatI WGTACW 3 cut(s) 336, 794, 936
TauI GCSGC 1 cut(s) 215
TfiI GAWTC 2 cut(s) 806, 1301
Tru1I TTAA 8 cut(s) 249, 278, 839, 1092, 1326, 1551, 1601, 1663
Tru9I TTAA 8 cut(s) 249, 278, 839, 1092, 1326, 1551, 1601, 1663
TscAI CASTG 2 cut(s) 1318, 1539
TseFI GTSAC 3 cut(s) 702, 1391, 1433
TseI GCWGC 2 cut(s) 326, 431
Tsp45I GTSAC 3 cut(s) 702, 1391, 1433
TspDTI ATGAA 6 cut(s) 686, 1187, 1236, 1265, 1278, 1639
TspRI CASTG 2 cut(s) 1318, 1539
XagI CCTNNNNNAGG 1 cut(s) 1451
XapI RAATTY 1 cut(s) 344
XbaI TCTAGA 1 cut(s) 505
XceI RCATGY 1 cut(s) 1646
XcmI CCANNNNNNNNNTGG 1 cut(s) 537
XmnI GAANNNNTTC 2 cut(s) 567, 1582
XspI CTAG 2 cut(s) 506, 1626
Zsp2I ATGCAT 1 cut(s) 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.