protein ubiquitination
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom01g03740 pycom01g03820 pycom01g03900 pycom05g01760 pycom10g28260 pycom13g23390 pycom13g24270 pycom13g26850 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 668, 1953 |
| AatII | GACGTC | 1 cut(s) | 2768 |
| Acc36I | ACCTGC | 1 cut(s) | 2272 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 39 |
| AccBSI | CCGCTC | 1 cut(s) | 1100 |
| AccII | CGCG | 2 cut(s) | 2251, 2253 |
| AciI | CCGC | 3 cut(s) | 567, 617, 1100 |
| AclWI | GGATC | 3 cut(s) | 1787, 2135, 2148 |
| AcyI | GRCGYC | 1 cut(s) | 2765 |
| AfaI | GTAC | 4 cut(s) | 1312, 1538, 1835, 2272 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 39, 2126, 2496 |
| AhlI | ACTAGT | 2 cut(s) | 1403, 1808 |
| AjiI | CACGTC | 2 cut(s) | 2029, 2370 |
| AjnI | CCWGG | 2 cut(s) | 10, 2374 |
| Alw21I | GWGCWC | 4 cut(s) | 519, 1095, 1507, 2001 |
| Alw26I | GTCTC | 3 cut(s) | 396, 555, 2376 |
| Alw44I | GTGCAC | 1 cut(s) | 1503 |
| AlwI | GGATC | 3 cut(s) | 1787, 2135, 2148 |
| Ama87I | CYCGRG | 1 cut(s) | 2385 |
| AoxI | GGCC | 1 cut(s) | 1285 |
| ApaLI | GTGCAC | 1 cut(s) | 1503 |
| ApeKI | GCWGC | 6 cut(s) | 317, 326, 445, 2057, 2060, 2063 |
| AseI | ATTAAT | 1 cut(s) | 1050 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1972 |
| AspLEI | GCGC | 1 cut(s) | 2253 |
| AspS9I | GGNCC | 1 cut(s) | 2004 |
| AsuHPI | GGTGA | 5 cut(s) | 95, 487, 1032, 1456, 2545 |
| AsuNHI | GCTAGC | 1 cut(s) | 388 |
| AvaI | CYCGRG | 1 cut(s) | 2385 |
| AvaII | GGWCC | 1 cut(s) | 2004 |
| BaeGI | GKGCMC | 1 cut(s) | 1507 |
| BamHI | GGATCC | 1 cut(s) | 2140 |
| BanII | GRGCYC | 1 cut(s) | 597 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2263, 2295 |
| BauI | CACGAG | 1 cut(s) | 1552 |
| Bbv12I | GWGCWC | 4 cut(s) | 519, 1095, 1507, 2001 |
| BbvI | GCAGC | 6 cut(s) | 313, 329, 432, 2044, 2047, 2050 |
| BccI | CCATC | 3 cut(s) | 241, 284, 977 |
| BceAI | ACGGC | 2 cut(s) | 287, 2530 |
| BciT130I | CCWGG | 2 cut(s) | 12, 2376 |
| BcoDI | GTCTC | 3 cut(s) | 396, 555, 2376 |
| BcuI | ACTAGT | 2 cut(s) | 1403, 1808 |
| BfaI | CTAG | 7 cut(s) | 330, 389, 479, 858, 1404, 1580, 1809 |
| BfmI | CTRYAG | 2 cut(s) | 507, 2692 |
| BfuAI | ACCTGC | 1 cut(s) | 2272 |
| BisI | GCNGC | 7 cut(s) | 318, 327, 446, 567, 2058, 2061, 2064 |
| BlpI | GCTNAGC | 1 cut(s) | 765 |
| BlsI | GCNGC | 7 cut(s) | 319, 328, 447, 568, 2059, 2062, 2065 |
| Bme1390I | CCNGG | 2 cut(s) | 12, 2376 |
| Bme18I | GGWCC | 1 cut(s) | 2004 |
| BmeT110I | CYCGRG | 1 cut(s) | 2385 |
| BmgBI | CACGTC | 2 cut(s) | 2029, 2370 |
| BmgT120I | GGNCC | 1 cut(s) | 2004 |
| BmiI | GGNNCC | 2 cut(s) | 9, 2142 |
| BmrFI | CCNGG | 2 cut(s) | 12, 2376 |
| BmsI | GCATC | 3 cut(s) | 364, 1916, 2759 |
| BmtI | GCTAGC | 1 cut(s) | 392 |
| BpmI | CTGGAG | 1 cut(s) | 33 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 765 |
| BpuEI | CTTGAG | 2 cut(s) | 1266, 2278 |
| BsaHI | GRCGYC | 1 cut(s) | 2765 |
| BsaI | GGTCTC | 1 cut(s) | 555 |
| BsaJI | CCNNGG | 1 cut(s) | 1086 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 39, 2126, 2496 |
| Bse1I | ACTGG | 1 cut(s) | 2226 |
| BseBI | CCWGG | 2 cut(s) | 12, 2376 |
| BseDI | CCNNGG | 1 cut(s) | 1086 |
| BseGI | GGATG | 4 cut(s) | 252, 988, 1847, 2340 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 39, 2126, 2496 |
| BseMII | CTCAG | 3 cut(s) | 207, 890, 2212 |
| BseNI | ACTGG | 1 cut(s) | 2226 |
| BseRI | GAGGAG | 2 cut(s) | 414, 2633 |
| BseSI | GKGCMC | 1 cut(s) | 1507 |
| BseXI | GCAGC | 6 cut(s) | 313, 329, 432, 2044, 2047, 2050 |
| Bsh1236I | CGCG | 2 cut(s) | 2251, 2253 |
| BshFI | GGCC | 1 cut(s) | 1287 |
| BsiHKAI | GWGCWC | 4 cut(s) | 519, 1095, 1507, 2001 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2385 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 39, 2126, 2496 |
| BsmAI | GTCTC | 3 cut(s) | 396, 555, 2376 |
| BsmBI | CGTCTC | 1 cut(s) | 2376 |
| BsnI | GGCC | 1 cut(s) | 1287 |
| Bso31I | GGTCTC | 1 cut(s) | 555 |
| BsoBI | CYCGRG | 1 cut(s) | 2385 |
| Bsp1286I | GDGCHC | 5 cut(s) | 519, 597, 1095, 1507, 2001 |
| Bsp143I | GATC | 5 cut(s) | 1510, 1542, 1792, 1844, 2140 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 765 |
| BspACI | CCGC | 3 cut(s) | 567, 617, 1100 |
| BspANI | GGCC | 1 cut(s) | 1287 |
| BspCNI | CTCAG | 3 cut(s) | 208, 891, 2211 |
| BspFNI | CGCG | 2 cut(s) | 2251, 2253 |
| BspLI | GGNNCC | 2 cut(s) | 9, 2142 |
| BspMI | ACCTGC | 1 cut(s) | 2272 |
| BspOI | GCTAGC | 1 cut(s) | 392 |
| BspPI | GGATC | 3 cut(s) | 1787, 2135, 2148 |
| BspTNI | GGTCTC | 1 cut(s) | 555 |
| BsrBI | CCGCTC | 1 cut(s) | 1100 |
| BsrI | ACTGG | 1 cut(s) | 2226 |
| BssECI | CCNNGG | 1 cut(s) | 1086 |
| BssMI | GATC | 5 cut(s) | 1510, 1542, 1792, 1844, 2140 |
| BssNI | GRCGYC | 1 cut(s) | 2765 |
| BssSI | CACGAG | 1 cut(s) | 1552 |
| BssT1I | CCWWGG | 1 cut(s) | 1086 |
| Bst2BI | CACGAG | 1 cut(s) | 1552 |
| Bst2UI | CCWGG | 2 cut(s) | 12, 2376 |
| Bst4CI | ACNGT | 3 cut(s) | 1804, 1996, 2318 |
| Bst6I | CTCTTC | 2 cut(s) | 558, 1978 |
| BstACI | GRCGYC | 1 cut(s) | 2765 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 326 |
| BstC8I | GCNNGC | 1 cut(s) | 390 |
| BstDEI | CTNAG | 7 cut(s) | 216, 765, 899, 977, 1125, 1745, 2198 |
| BstF5I | GGATG | 4 cut(s) | 252, 988, 1847, 2340 |
| BstFNI | CGCG | 2 cut(s) | 2251, 2253 |
| BstHHI | GCGC | 1 cut(s) | 2253 |
| BstKTI | GATC | 5 cut(s) | 1513, 1545, 1795, 1847, 2143 |
| BstMAI | GTCTC | 3 cut(s) | 396, 555, 2376 |
| BstMBI | GATC | 5 cut(s) | 1510, 1542, 1792, 1844, 2140 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 323, 326, 601, 2063, 2123, 2264, 2414 |
| BstNI | CCWGG | 2 cut(s) | 12, 2376 |
| BstNSI | RCATGY | 5 cut(s) | 281, 317, 350, 773, 2271 |
| BstSCI | CCNGG | 2 cut(s) | 10, 2374 |
| BstSFI | CTRYAG | 2 cut(s) | 507, 2692 |
| BstSLI | GKGCMC | 1 cut(s) | 1507 |
| BstUI | CGCG | 2 cut(s) | 2251, 2253 |
| BstV1I | GCAGC | 6 cut(s) | 313, 329, 432, 2044, 2047, 2050 |
| BstX2I | RGATCY | 1 cut(s) | 2140 |
| BstYI | RGATCY | 1 cut(s) | 2140 |
| BsuRI | GGCC | 1 cut(s) | 1287 |
| BtrI | CACGTC | 2 cut(s) | 2029, 2370 |
| BtsCI | GGATG | 4 cut(s) | 252, 988, 1847, 2340 |
| BtsI | GCAGTG | 1 cut(s) | 501 |
| BtsIMutI | CAGTG | 1 cut(s) | 501 |
| BveI | ACCTGC | 1 cut(s) | 2272 |
| Cac8I | GCNNGC | 1 cut(s) | 390 |
| CfoI | GCGC | 1 cut(s) | 2253 |
| Cfr13I | GGNCC | 1 cut(s) | 2004 |
| Csp6I | GTAC | 4 cut(s) | 1311, 1537, 1834, 2271 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 60, 95, 1540, 1575 |
| CviQI | GTAC | 4 cut(s) | 1311, 1537, 1834, 2271 |
| DdeI | CTNAG | 7 cut(s) | 216, 765, 899, 977, 1125, 1745, 2198 |
| DpnI | GATC | 5 cut(s) | 1512, 1544, 1794, 1846, 2142 |
| DpnII | GATC | 5 cut(s) | 1510, 1542, 1792, 1844, 2140 |
| DraI | TTTAAA | 5 cut(s) | 1296, 1333, 1438, 1492, 2653 |
| Eam1104I | CTCTTC | 2 cut(s) | 558, 1978 |
| EarI | CTCTTC | 2 cut(s) | 558, 1978 |
| Eco130I | CCWWGG | 1 cut(s) | 1086 |
| Eco24I | GRGCYC | 1 cut(s) | 597 |
| Eco31I | GGTCTC | 1 cut(s) | 555 |
| Eco32I | GATATC | 1 cut(s) | 805 |
| Eco47I | GGWCC | 1 cut(s) | 2004 |
| Eco88I | CYCGRG | 1 cut(s) | 2385 |
| EcoRII | CCWGG | 2 cut(s) | 10, 2374 |
| EcoRV | GATATC | 1 cut(s) | 805 |
| EcoT14I | CCWWGG | 1 cut(s) | 1086 |
| EcoT38I | GRGCYC | 1 cut(s) | 597 |
| ErhI | CCWWGG | 1 cut(s) | 1086 |
| Esp3I | CGTCTC | 1 cut(s) | 2376 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1957, 1989 |
| FauI | CCCGC | 1 cut(s) | 610 |
| Fnu4HI | GCNGC | 7 cut(s) | 318, 327, 446, 567, 2058, 2061, 2064 |
| FokI | GGATG | 4 cut(s) | 259, 995, 1834, 2327 |
| FriOI | GRGCYC | 1 cut(s) | 597 |
| Fsp4HI | GCNGC | 7 cut(s) | 318, 327, 446, 567, 2058, 2061, 2064 |
| FspBI | CTAG | 7 cut(s) | 330, 389, 479, 858, 1404, 1580, 1809 |
| GlaI | GCGC | 1 cut(s) | 2252 |
| GluI | GCNGC | 7 cut(s) | 318, 327, 446, 567, 2058, 2061, 2064 |
| GsuI | CTGGAG | 1 cut(s) | 33 |
| HaeIII | GGCC | 1 cut(s) | 1287 |
| HhaI | GCGC | 1 cut(s) | 2253 |
| Hin1I | GRCGYC | 1 cut(s) | 2765 |
| Hin6I | GCGC | 1 cut(s) | 2251 |
| HinP1I | GCGC | 1 cut(s) | 2251 |
| HincII | GTYRAC | 1 cut(s) | 1672 |
| HindII | GTYRAC | 1 cut(s) | 1672 |
| HindIII | AAGCTT | 2 cut(s) | 196, 204 |
| HinfI | GANTC | 5 cut(s) | 241, 523, 1008, 1840, 2388 |
| HphI | GGTGA | 5 cut(s) | 95, 487, 1032, 1456, 2545 |
| Hpy166II | GTNNAC | 6 cut(s) | 57, 93, 938, 1505, 1672, 2678 |
| Hpy188I | TCNGA | 8 cut(s) | 28, 232, 246, 900, 1758, 2026, 2133, 2201 |
| Hpy188III | TCNNGA | 8 cut(s) | 520, 1211, 1247, 1304, 2295, 2311, 2385, 2723 |
| Hpy8I | GTNNAC | 6 cut(s) | 57, 93, 938, 1505, 1672, 2678 |
| HpyAV | CCTTC | 7 cut(s) | 146, 508, 2017, 2031, 2157, 2167, 2490 |
| HpyCH4III | ACNGT | 3 cut(s) | 1804, 1996, 2318 |
| HpyCH4IV | ACGT | 4 cut(s) | 1486, 2028, 2369, 2765 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 323, 326, 601, 2063, 2123, 2264, 2414 |
| HpyF3I | CTNAG | 7 cut(s) | 216, 765, 899, 977, 1125, 1745, 2198 |
| HpySE526I | ACGT | 4 cut(s) | 1486, 2028, 2369, 2765 |
| Hsp92I | GRCGYC | 1 cut(s) | 2765 |
| HspAI | GCGC | 1 cut(s) | 2251 |
| Kzo9I | GATC | 5 cut(s) | 1510, 1542, 1792, 1844, 2140 |
| LmnI | GCTCC | 4 cut(s) | 819, 1090, 1097, 2413 |
| Lsp1109I | GCAGC | 6 cut(s) | 313, 329, 432, 2044, 2047, 2050 |
| LweI | GCATC | 3 cut(s) | 364, 1916, 2759 |
| MaeI | CTAG | 7 cut(s) | 330, 389, 479, 858, 1404, 1580, 1809 |
| MaeII | ACGT | 4 cut(s) | 1486, 2028, 2369, 2765 |
| MaeIII | GTNAC | 8 cut(s) | 481, 867, 1177, 1804, 1819, 1864, 1924, 2429 |
| MalI | GATC | 5 cut(s) | 1512, 1544, 1794, 1846, 2142 |
| MbiI | CCGCTC | 1 cut(s) | 1100 |
| MboI | GATC | 5 cut(s) | 1510, 1542, 1792, 1844, 2140 |
| MfeI | CAATTG | 1 cut(s) | 34 |
| MflI | RGATCY | 1 cut(s) | 2140 |
| MhlI | GDGCHC | 5 cut(s) | 519, 597, 1095, 1507, 2001 |
| MlyI | GAGTC | 2 cut(s) | 1834, 2397 |
| MmeI | TCCRAC | 1 cut(s) | 460 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1972 |
| MslI | CAYNNNNRTG | 2 cut(s) | 531, 792 |
| MspA1I | CMGCKG | 2 cut(s) | 326, 512 |
| MspR9I | CCNGG | 2 cut(s) | 12, 2376 |
| MunI | CAATTG | 1 cut(s) | 34 |
| MvaI | CCWGG | 2 cut(s) | 12, 2376 |
| MvnI | CGCG | 2 cut(s) | 2251, 2253 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 323, 326, 601, 2063, 2123, 2264, 2414 |
| NdeII | GATC | 5 cut(s) | 1510, 1542, 1792, 1844, 2140 |
| NheI | GCTAGC | 1 cut(s) | 388 |
| NlaIV | GGNNCC | 2 cut(s) | 9, 2142 |
| NmeAIII | GCCGAG | 1 cut(s) | 1804 |
| NmuCI | GTSAC | 1 cut(s) | 481 |
| NspI | RCATGY | 5 cut(s) | 281, 317, 350, 773, 2271 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 482, 1788 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1972 |
| PfeI | GAWTC | 3 cut(s) | 241, 523, 1008 |
| PflFI | GACNNNGTC | 1 cut(s) | 547 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 39 |
| PkrI | GCNGC | 7 cut(s) | 319, 328, 447, 568, 2059, 2062, 2065 |
| PleI | GAGTC | 2 cut(s) | 1834, 2396 |
| PpsI | GAGTC | 2 cut(s) | 1834, 2396 |
| PshBI | ATTAAT | 1 cut(s) | 1050 |
| PsiI | TTATAA | 2 cut(s) | 668, 1953 |
| Psp6I | CCWGG | 2 cut(s) | 10, 2374 |
| PspGI | CCWGG | 2 cut(s) | 10, 2374 |
| PspN4I | GGNNCC | 2 cut(s) | 9, 2142 |
| PspPI | GGNCC | 1 cut(s) | 2004 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 1150, 1182, 1917, 1949 |
| PsuI | RGATCY | 1 cut(s) | 2140 |
| PsyI | GACNNNGTC | 1 cut(s) | 547 |
| PvuII | CAGCTG | 2 cut(s) | 326, 512 |
| RsaI | GTAC | 4 cut(s) | 1312, 1538, 1835, 2272 |
| RsaNI | GTAC | 4 cut(s) | 1311, 1537, 1834, 2271 |
| RseI | CAYNNNNRTG | 2 cut(s) | 531, 792 |
| SatI | GCNGC | 7 cut(s) | 318, 327, 446, 567, 2058, 2061, 2064 |
| Sau3AI | GATC | 5 cut(s) | 1510, 1542, 1792, 1844, 2140 |
| Sau96I | GGNCC | 1 cut(s) | 2004 |
| SchI | GAGTC | 2 cut(s) | 1834, 2397 |
| ScrFI | CCNGG | 2 cut(s) | 12, 2376 |
| SduI | GDGCHC | 5 cut(s) | 519, 597, 1095, 1507, 2001 |
| SfaNI | GCATC | 3 cut(s) | 364, 1916, 2759 |
| SfcI | CTRYAG | 2 cut(s) | 507, 2692 |
| SinI | GGWCC | 1 cut(s) | 2004 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 531, 792 |
| SmlI | CTYRAG | 2 cut(s) | 1281, 2293 |
| SmoI | CTYRAG | 2 cut(s) | 1281, 2293 |
| SpeI | ACTAGT | 2 cut(s) | 1403, 1808 |
| SsiI | CCGC | 3 cut(s) | 567, 617, 1100 |
| SspI | AATATT | 4 cut(s) | 756, 1468, 1569, 2773 |
| SspMI | CTAG | 7 cut(s) | 330, 389, 479, 858, 1404, 1580, 1809 |
| StyD4I | CCNGG | 2 cut(s) | 10, 2374 |
| StyI | CCWWGG | 1 cut(s) | 1086 |
| TaaI | ACNGT | 3 cut(s) | 1804, 1996, 2318 |
| TaiI | ACGT | 4 cut(s) | 1489, 2031, 2372, 2768 |
| TaqI | TCGA | 6 cut(s) | 1011, 1497, 1782, 1843, 1976, 2722 |
| TatI | WGTACW | 2 cut(s) | 1310, 2270 |
| TauI | GCSGC | 1 cut(s) | 569 |
| TfiI | GAWTC | 3 cut(s) | 241, 523, 1008 |
| TscAI | CASTG | 1 cut(s) | 508 |
| TseFI | GTSAC | 1 cut(s) | 481 |
| TseI | GCWGC | 6 cut(s) | 317, 326, 445, 2057, 2060, 2063 |
| Tsp45I | GTSAC | 1 cut(s) | 481 |
| TspDTI | ATGAA | 9 cut(s) | 198, 225, 515, 872, 1221, 1268, 1959, 2139, 2232 |
| TspGWI | ACGGA | 2 cut(s) | 1110, 2333 |
| TspRI | CASTG | 1 cut(s) | 508 |
| Tth111I | GACNNNGTC | 1 cut(s) | 547 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 39 |
| VneI | GTGCAC | 1 cut(s) | 1503 |
| VpaK11BI | GGWCC | 1 cut(s) | 2004 |
| VspI | ATTAAT | 1 cut(s) | 1050 |
| XceI | RCATGY | 5 cut(s) | 281, 317, 350, 773, 2271 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1972 |
| XspI | CTAG | 7 cut(s) | 330, 389, 479, 858, 1404, 1580, 1809 |
| ZraI | GACGTC | 1 cut(s) | 2766 |