Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom01g03740 pycom01g03820 pycom01g03900 pycom05g01760 pycom10g28260 pycom13g23390 pycom13g24270 pycom13g26850 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 114 |
| AarI | CACCTGC | 1 cut(s) | 249 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1349 |
| AatII | GACGTC | 1 cut(s) | 1347 |
| Acc36I | ACCTGC | 1 cut(s) | 249 |
| Acc65I | GGTACC | 2 cut(s) | 1246, 1510 |
| AccB1I | GGYRCC | 2 cut(s) | 1246, 1510 |
| AccI | GTMKAC | 2 cut(s) | 769, 846 |
| AccII | CGCG | 5 cut(s) | 450, 457, 986, 1284, 1548 |
| AccIII | TCCGGA | 1 cut(s) | 1858 |
| AclWI | GGATC | 3 cut(s) | 52, 65, 549 |
| AcoI | YGGCCR | 2 cut(s) | 1354, 1608 |
| AcsI | RAATTY | 6 cut(s) | 116, 151, 628, 1715, 1759, 1844 |
| AcuI | CTGAAG | 1 cut(s) | 713 |
| AcvI | CACGTG | 1 cut(s) | 867 |
| AcyI | GRCGYC | 2 cut(s) | 518, 1344 |
| AfaI | GTAC | 5 cut(s) | 596, 656, 1128, 1248, 1512 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 169, 915, 1208, 1211, 1212, 1472, 1475, 1476, 1606 |
| AflIII | ACRYGT | 3 cut(s) | 1282, 1546, 1826 |
| AgeI | ACCGGT | 1 cut(s) | 1243 |
| AgsI | TTSAA | 5 cut(s) | 136, 563, 825, 963, 1843 |
| AjiI | CACGTC | 1 cut(s) | 700 |
| AjnI | CCWGG | 1 cut(s) | 39 |
| AluBI | AGCT | 1 cut(s) | 1746 |
| AluI | AGCT | 1 cut(s) | 1746 |
| Alw26I | GTCTC | 1 cut(s) | 153 |
| AlwI | GGATC | 3 cut(s) | 52, 65, 549 |
| Ama87I | CYCGRG | 3 cut(s) | 156, 334, 840 |
| Aor13HI | TCCGGA | 1 cut(s) | 1858 |
| AoxI | GGCC | 8 cut(s) | 250, 284, 832, 837, 1322, 1354, 1586, 1608 |
| ApaI | GGGCCC | 1 cut(s) | 288 |
| ApoI | RAATTY | 6 cut(s) | 116, 151, 628, 1715, 1759, 1844 |
| AseI | ATTAAT | 1 cut(s) | 1046 |
| AsiGI | ACCGGT | 1 cut(s) | 1243 |
| Asp718I | GGTACC | 2 cut(s) | 1246, 1510 |
| AspLEI | GCGC | 5 cut(s) | 690, 986, 988, 1268, 1532 |
| AsuC2I | CCSGG | 3 cut(s) | 836, 1206, 1470 |
| AsuHPI | GGTGA | 2 cut(s) | 405, 419 |
| AvaI | CYCGRG | 3 cut(s) | 156, 334, 840 |
| AvaII | GGWCC | 4 cut(s) | 295, 706, 807, 817 |
| AxyI | CCTNAGG | 1 cut(s) | 272 |
| BaeGI | GKGCMC | 1 cut(s) | 288 |
| BamHI | GGATCC | 1 cut(s) | 57 |
| BanI | GGYRCC | 2 cut(s) | 1246, 1510 |
| BanII | GRGCYC | 1 cut(s) | 288 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 19, 51, 710, 742 |
| BauI | CACGAG | 2 cut(s) | 1391, 1602 |
| BbrPI | CACGTG | 1 cut(s) | 867 |
| BbsI | GAAGAC | 1 cut(s) | 393 |
| BccI | CCATC | 2 cut(s) | 444, 1674 |
| BceAI | ACGGC | 6 cut(s) | 379, 1240, 1253, 1341, 1504, 1517 |
| BciT130I | CCWGG | 1 cut(s) | 41 |
| BclI | TGATCA | 1 cut(s) | 99 |
| BcnI | CCSGG | 3 cut(s) | 836, 1206, 1470 |
| BcoDI | GTCTC | 1 cut(s) | 153 |
| BfaI | CTAG | 3 cut(s) | 473, 860, 1733 |
| BfoI | RGCGCY | 3 cut(s) | 691, 1269, 1533 |
| BfuAI | ACCTGC | 1 cut(s) | 249 |
| BisI | GCNGC | 2 cut(s) | 1169, 1433 |
| BlsI | GCNGC | 2 cut(s) | 1170, 1434 |
| Bme1390I | CCNGG | 4 cut(s) | 41, 836, 1206, 1470 |
| Bme18I | GGWCC | 4 cut(s) | 295, 706, 807, 817 |
| BmeT110I | CYCGRG | 3 cut(s) | 156, 334, 840 |
| BmgBI | CACGTC | 1 cut(s) | 700 |
| BmrFI | CCNGG | 4 cut(s) | 41, 836, 1206, 1470 |
| BmrI | ACTGGG | 1 cut(s) | 1650 |
| BmsI | GCATC | 2 cut(s) | 748, 1858 |
| BmuI | ACTGGG | 1 cut(s) | 1650 |
| BpiI | GAAGAC | 1 cut(s) | 393 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1385, 1417, 1735, 1767 |
| BpmI | CTGGAG | 3 cut(s) | 390, 1236, 1500 |
| BpuMI | CCSGG | 3 cut(s) | 836, 1206, 1470 |
| BsaAI | YACGTR | 1 cut(s) | 867 |
| BsaBI | GATNNNNATC | 1 cut(s) | 185 |
| BsaHI | GRCGYC | 2 cut(s) | 518, 1344 |
| BsaI | GGTCTC | 1 cut(s) | 153 |
| BsaJI | CCNNGG | 3 cut(s) | 39, 1326, 1590 |
| BsaWI | WCCGGW | 2 cut(s) | 1243, 1858 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 361, 391 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 169, 915, 1208, 1211, 1212, 1472, 1475, 1476, 1606 |
| Bse118I | RCCGGY | 1 cut(s) | 1243 |
| Bse1I | ACTGG | 3 cut(s) | 560, 1512, 1645 |
| Bse21I | CCTNAGG | 1 cut(s) | 272 |
| Bse3DI | GCAATG | 1 cut(s) | 521 |
| Bse8I | GATNNNNATC | 1 cut(s) | 185 |
| BseAI | TCCGGA | 1 cut(s) | 1858 |
| BseBI | CCWGG | 1 cut(s) | 41 |
| BseDI | CCNNGG | 3 cut(s) | 39, 1326, 1590 |
| BseGI | GGATG | 4 cut(s) | 739, 1156, 1420, 1867 |
| BseJI | GATNNNNATC | 1 cut(s) | 185 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 169, 915, 1208, 1211, 1212, 1472, 1475, 1476, 1606 |
| BseMI | GCAATG | 1 cut(s) | 521 |
| BseMII | CTCAG | 1 cut(s) | 758 |
| BseNI | ACTGG | 3 cut(s) | 560, 1512, 1645 |
| BsePI | GCGCGC | 1 cut(s) | 984 |
| BseSI | GKGCMC | 1 cut(s) | 288 |
| BseX3I | CGGCCG | 1 cut(s) | 1354 |
| BseYI | CCCAGC | 2 cut(s) | 430, 773 |
| Bsh1236I | CGCG | 5 cut(s) | 450, 457, 986, 1284, 1548 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1357 |
| BshFI | GGCC | 8 cut(s) | 252, 286, 834, 839, 1324, 1356, 1588, 1610 |
| BshNI | GGYRCC | 2 cut(s) | 1246, 1510 |
| BshTI | ACCGGT | 1 cut(s) | 1243 |
| BsiEI | CGRYCG | 1 cut(s) | 1357 |
| BsiHKCI | CYCGRG | 3 cut(s) | 156, 334, 840 |
| BsiSI | CCGG | 6 cut(s) | 836, 1206, 1244, 1398, 1470, 1859 |
| BslFI | GGGAC | 3 cut(s) | 803, 1331, 1636 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 169, 915, 1208, 1211, 1212, 1472, 1475, 1476, 1606 |
| BsmAI | GTCTC | 1 cut(s) | 153 |
| BsmFI | GGGAC | 3 cut(s) | 803, 1331, 1636 |
| BsmI | GAATGC | 2 cut(s) | 1195, 1459 |
| BsnI | GGCC | 8 cut(s) | 252, 286, 834, 839, 1324, 1356, 1588, 1610 |
| Bso31I | GGTCTC | 1 cut(s) | 153 |
| BsoBI | CYCGRG | 3 cut(s) | 156, 334, 840 |
| Bsp120I | GGGCCC | 1 cut(s) | 284 |
| Bsp1286I | GDGCHC | 1 cut(s) | 288 |
| Bsp13I | TCCGGA | 1 cut(s) | 1858 |
| Bsp1407I | TGTACA | 1 cut(s) | 654 |
| Bsp143I | GATC | 5 cut(s) | 57, 99, 541, 811, 1612 |
| Bsp68I | TCGCGA | 2 cut(s) | 450, 457 |
| BspANI | GGCC | 8 cut(s) | 252, 286, 834, 839, 1324, 1356, 1588, 1610 |
| BspCNI | CTCAG | 1 cut(s) | 757 |
| BspEI | TCCGGA | 1 cut(s) | 1858 |
| BspFNI | CGCG | 5 cut(s) | 450, 457, 986, 1284, 1548 |
| BspMI | ACCTGC | 1 cut(s) | 249 |
| BspPI | GGATC | 3 cut(s) | 52, 65, 549 |
| BspT107I | GGYRCC | 2 cut(s) | 1246, 1510 |
| BspTNI | GGTCTC | 1 cut(s) | 153 |
| BsrDI | GCAATG | 1 cut(s) | 521 |
| BsrFI | RCCGGY | 1 cut(s) | 1243 |
| BsrGI | TGTACA | 1 cut(s) | 654 |
| BsrI | ACTGG | 3 cut(s) | 560, 1512, 1645 |
| BssAI | RCCGGY | 1 cut(s) | 1243 |
| BssECI | CCNNGG | 3 cut(s) | 39, 1326, 1590 |
| BssHII | GCGCGC | 1 cut(s) | 984 |
| BssMI | GATC | 5 cut(s) | 57, 99, 541, 811, 1612 |
| BssNI | GRCGYC | 2 cut(s) | 518, 1344 |
| BssSI | CACGAG | 2 cut(s) | 1391, 1602 |
| BssT1I | CCWWGG | 2 cut(s) | 1326, 1590 |
| Bst2BI | CACGAG | 2 cut(s) | 1391, 1602 |
| Bst2UI | CCWGG | 1 cut(s) | 41 |
| Bst4CI | ACNGT | 2 cut(s) | 594, 959 |
| BstACI | GRCGYC | 2 cut(s) | 518, 1344 |
| BstAUI | TGTACA | 1 cut(s) | 654 |
| BstBAI | YACGTR | 1 cut(s) | 867 |
| BstC8I | GCNNGC | 4 cut(s) | 250, 986, 1264, 1528 |
| BstDEI | CTNAG | 6 cut(s) | 272, 341, 545, 744, 1288, 1552 |
| BstF5I | GGATG | 4 cut(s) | 739, 1156, 1420, 1867 |
| BstFNI | CGCG | 5 cut(s) | 450, 457, 986, 1284, 1548 |
| BstH2I | RGCGCY | 3 cut(s) | 691, 1269, 1533 |
| BstHHI | GCGC | 5 cut(s) | 690, 986, 988, 1268, 1532 |
| BstKTI | GATC | 5 cut(s) | 60, 102, 544, 814, 1615 |
| BstMAI | GTCTC | 1 cut(s) | 153 |
| BstMBI | GATC | 5 cut(s) | 57, 99, 541, 811, 1612 |
| BstMCI | CGRYCG | 1 cut(s) | 1357 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 207, 216, 694, 1201, 1465 |
| BstNI | CCWGG | 1 cut(s) | 41 |
| BstNSI | RCATGY | 1 cut(s) | 1830 |
| BstSCI | CCNGG | 4 cut(s) | 39, 834, 1204, 1468 |
| BstSLI | GKGCMC | 1 cut(s) | 288 |
| BstUI | CGCG | 5 cut(s) | 450, 457, 986, 1284, 1548 |
| BstV2I | GAAGAC | 1 cut(s) | 393 |
| BstX2I | RGATCY | 2 cut(s) | 57, 541 |
| BstYI | RGATCY | 2 cut(s) | 57, 541 |
| BstZI | CGGCCG | 1 cut(s) | 1354 |
| Bsu36I | CCTNAGG | 1 cut(s) | 272 |
| BsuRI | GGCC | 8 cut(s) | 252, 286, 834, 839, 1324, 1356, 1588, 1610 |
| BtrI | CACGTC | 1 cut(s) | 700 |
| BtsCI | GGATG | 4 cut(s) | 739, 1156, 1420, 1867 |
| BtsIMutI | CAGTG | 1 cut(s) | 752 |
| BtuMI | TCGCGA | 2 cut(s) | 450, 457 |
| BveI | ACCTGC | 1 cut(s) | 249 |
| Cac8I | GCNNGC | 4 cut(s) | 250, 986, 1264, 1528 |
| CfoI | GCGC | 5 cut(s) | 690, 986, 988, 1268, 1532 |
| Cfr10I | RCCGGY | 1 cut(s) | 1243 |
| CseI | GACGC | 3 cut(s) | 507, 1273, 1537 |
| Csp6I | GTAC | 5 cut(s) | 595, 655, 1127, 1247, 1511 |
| CspAI | ACCGGT | 1 cut(s) | 1243 |
| CviAII | CATG | 4 cut(s) | 703, 715, 1819, 1827 |
| CviQI | GTAC | 5 cut(s) | 595, 655, 1127, 1247, 1511 |
| DdeI | CTNAG | 6 cut(s) | 272, 341, 545, 744, 1288, 1552 |
| DpnI | GATC | 5 cut(s) | 59, 101, 543, 813, 1614 |
| DpnII | GATC | 5 cut(s) | 57, 99, 541, 811, 1612 |
| DraI | TTTAAA | 3 cut(s) | 129, 799, 1704 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1349 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1349 |
| EaeI | YGGCCR | 2 cut(s) | 1354, 1608 |
| EagI | CGGCCG | 1 cut(s) | 1354 |
| EclXI | CGGCCG | 1 cut(s) | 1354 |
| Eco130I | CCWWGG | 2 cut(s) | 1326, 1590 |
| Eco24I | GRGCYC | 1 cut(s) | 288 |
| Eco31I | GGTCTC | 1 cut(s) | 153 |
| Eco47I | GGWCC | 4 cut(s) | 295, 706, 807, 817 |
| Eco52I | CGGCCG | 1 cut(s) | 1354 |
| Eco57I | CTGAAG | 1 cut(s) | 713 |
| Eco72I | CACGTG | 1 cut(s) | 867 |
| Eco81I | CCTNAGG | 1 cut(s) | 272 |
| Eco88I | CYCGRG | 3 cut(s) | 156, 334, 840 |
| EcoO109I | RGGNCCY | 2 cut(s) | 284, 285 |
| EcoRI | GAATTC | 1 cut(s) | 151 |
| EcoRII | CCWGG | 1 cut(s) | 39 |
| EcoT14I | CCWWGG | 2 cut(s) | 1326, 1590 |
| EcoT38I | GRGCYC | 1 cut(s) | 288 |
| ErhI | CCWWGG | 2 cut(s) | 1326, 1590 |
| FaeI | CATG | 4 cut(s) | 706, 718, 1822, 1830 |
| FaqI | GGGAC | 3 cut(s) | 803, 1331, 1636 |
| FatI | CATG | 4 cut(s) | 702, 714, 1818, 1826 |
| FauI | CCCGC | 5 cut(s) | 241, 1173, 1209, 1437, 1473 |
| FauNDI | CATATG | 1 cut(s) | 1617 |
| FbaI | TGATCA | 1 cut(s) | 99 |
| FblI | GTMKAC | 2 cut(s) | 769, 846 |
| Fnu4HI | GCNGC | 2 cut(s) | 1169, 1433 |
| FokI | GGATG | 4 cut(s) | 726, 1143, 1407, 1874 |
| FriOI | GRGCYC | 1 cut(s) | 288 |
| Fsp4HI | GCNGC | 2 cut(s) | 1169, 1433 |
| FspBI | CTAG | 3 cut(s) | 473, 860, 1733 |
| GlaI | GCGC | 5 cut(s) | 689, 985, 987, 1267, 1531 |
| GluI | GCNGC | 2 cut(s) | 1169, 1433 |
| GsaI | CCCAGC | 2 cut(s) | 434, 777 |
| GsuI | CTGGAG | 3 cut(s) | 390, 1236, 1500 |
| HaeII | RGCGCY | 3 cut(s) | 691, 1269, 1533 |
| HaeIII | GGCC | 8 cut(s) | 252, 286, 834, 839, 1324, 1356, 1588, 1610 |
| HapII | CCGG | 6 cut(s) | 836, 1206, 1244, 1398, 1470, 1859 |
| HgaI | GACGC | 3 cut(s) | 507, 1273, 1537 |
| HhaI | GCGC | 5 cut(s) | 690, 986, 988, 1268, 1532 |
| Hin1I | GRCGYC | 2 cut(s) | 518, 1344 |
| Hin1II | CATG | 4 cut(s) | 706, 718, 1822, 1830 |
| Hin6I | GCGC | 5 cut(s) | 688, 984, 986, 1266, 1530 |
| HinP1I | GCGC | 5 cut(s) | 688, 984, 986, 1266, 1530 |
| HpaII | CCGG | 6 cut(s) | 836, 1206, 1244, 1398, 1470, 1859 |
| HphI | GGTGA | 2 cut(s) | 405, 419 |
| Hpy166II | GTNNAC | 4 cut(s) | 597, 770, 847, 1129 |
| Hpy188I | TCNGA | 6 cut(s) | 57, 104, 180, 811, 970, 1405 |
| Hpy188III | TCNNGA | 6 cut(s) | 156, 334, 449, 456, 1340, 1859 |
| Hpy8I | GTNNAC | 4 cut(s) | 597, 770, 847, 1129 |
| Hpy99I | CGWCG | 6 cut(s) | 57, 450, 1274, 1346, 1355, 1538 |
| HpyAV | CCTTC | 5 cut(s) | 364, 557, 591, 831, 1085 |
| HpyCH4III | ACNGT | 2 cut(s) | 594, 959 |
| HpyCH4IV | ACGT | 4 cut(s) | 699, 866, 1344, 1372 |
| HpyCH4V | TGCA | 4 cut(s) | 227, 264, 1726, 1822 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 207, 216, 694, 1201, 1465 |
| HpyF3I | CTNAG | 6 cut(s) | 272, 341, 545, 744, 1288, 1552 |
| HpySE526I | ACGT | 4 cut(s) | 699, 866, 1344, 1372 |
| Hsp92I | GRCGYC | 2 cut(s) | 518, 1344 |
| Hsp92II | CATG | 4 cut(s) | 706, 718, 1822, 1830 |
| HspAI | GCGC | 5 cut(s) | 688, 984, 986, 1266, 1530 |
| Kpn2I | TCCGGA | 1 cut(s) | 1858 |
| KpnI | GGTACC | 2 cut(s) | 1250, 1514 |
| Ksp22I | TGATCA | 1 cut(s) | 99 |
| Kzo9I | GATC | 5 cut(s) | 57, 99, 541, 811, 1612 |
| LweI | GCATC | 2 cut(s) | 748, 1858 |
| MaeI | CTAG | 3 cut(s) | 473, 860, 1733 |
| MaeII | ACGT | 4 cut(s) | 699, 866, 1344, 1372 |
| MaeIII | GTNAC | 6 cut(s) | 1152, 1291, 1373, 1416, 1555, 1630 |
| MalI | GATC | 5 cut(s) | 59, 101, 543, 813, 1614 |
| MboI | GATC | 5 cut(s) | 57, 99, 541, 811, 1612 |
| MboII | GAAGA | 2 cut(s) | 393, 1877 |
| MfeI | CAATTG | 2 cut(s) | 395, 1094 |
| MflI | RGATCY | 2 cut(s) | 57, 541 |
| MhlI | GDGCHC | 1 cut(s) | 288 |
| MluI | ACGCGT | 2 cut(s) | 1282, 1546 |
| MlyI | GAGTC | 5 cut(s) | 346, 461, 848, 852, 1403 |
| MmeI | TCCRAC | 2 cut(s) | 35, 404 |
| MroI | TCCGGA | 1 cut(s) | 1858 |
| MseI | TTAA | 9 cut(s) | 128, 387, 752, 798, 905, 1046, 1053, 1106, 1703 |
| MspI | CCGG | 6 cut(s) | 836, 1206, 1244, 1398, 1470, 1859 |
| MspR9I | CCNGG | 4 cut(s) | 41, 836, 1206, 1470 |
| MunI | CAATTG | 2 cut(s) | 395, 1094 |
| Mva1269I | GAATGC | 2 cut(s) | 1195, 1459 |
| MvaI | CCWGG | 1 cut(s) | 41 |
| MvnI | CGCG | 5 cut(s) | 450, 457, 986, 1284, 1548 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 207, 216, 694, 1201, 1465 |
| NciI | CCSGG | 3 cut(s) | 836, 1206, 1470 |
| NdeI | CATATG | 1 cut(s) | 1617 |
| NdeII | GATC | 5 cut(s) | 57, 99, 541, 811, 1612 |
| NlaIII | CATG | 4 cut(s) | 706, 718, 1822, 1830 |
| NmuCI | GTSAC | 4 cut(s) | 1152, 1373, 1416, 1630 |
| NruI | TCGCGA | 2 cut(s) | 450, 457 |
| NspI | RCATGY | 1 cut(s) | 1830 |
| PaqCI | CACCTGC | 1 cut(s) | 249 |
| PauI | GCGCGC | 1 cut(s) | 984 |
| PciI | ACATGT | 1 cut(s) | 1826 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 454 |
| PctI | GAATGC | 2 cut(s) | 1195, 1459 |
| PfeI | GAWTC | 6 cut(s) | 47, 73, 175, 186, 345, 888 |
| PflFI | GACNNNGTC | 1 cut(s) | 1371 |
| PinAI | ACCGGT | 1 cut(s) | 1243 |
| PkrI | GCNGC | 2 cut(s) | 1170, 1434 |
| PleI | GAGTC | 5 cut(s) | 345, 460, 848, 851, 1402 |
| PmaCI | CACGTG | 1 cut(s) | 867 |
| PmlI | CACGTG | 1 cut(s) | 867 |
| PpsI | GAGTC | 5 cut(s) | 345, 460, 848, 851, 1402 |
| Ppu21I | YACGTR | 1 cut(s) | 867 |
| PscI | ACATGT | 1 cut(s) | 1826 |
| PshBI | ATTAAT | 1 cut(s) | 1046 |
| PsiI | TTATAA | 1 cut(s) | 114 |
| Psp6I | CCWGG | 1 cut(s) | 39 |
| PspCI | CACGTG | 1 cut(s) | 867 |
| PspFI | CCCAGC | 2 cut(s) | 430, 773 |
| PspGI | CCWGG | 1 cut(s) | 39 |
| PspOMI | GGGCCC | 1 cut(s) | 284 |
| PsuI | RGATCY | 2 cut(s) | 57, 541 |
| PsyI | GACNNNGTC | 1 cut(s) | 1371 |
| PteI | GCGCGC | 1 cut(s) | 984 |
| RruI | TCGCGA | 2 cut(s) | 450, 457 |
| RsaI | GTAC | 5 cut(s) | 596, 656, 1128, 1248, 1512 |
| RsaNI | GTAC | 5 cut(s) | 595, 655, 1127, 1247, 1511 |
| SaqAI | TTAA | 9 cut(s) | 128, 387, 752, 798, 905, 1046, 1053, 1106, 1703 |
| SatI | GCNGC | 2 cut(s) | 1169, 1433 |
| Sau3AI | GATC | 5 cut(s) | 57, 99, 541, 811, 1612 |
| SchI | GAGTC | 5 cut(s) | 346, 461, 848, 852, 1403 |
| ScrFI | CCNGG | 4 cut(s) | 41, 836, 1206, 1470 |
| SduI | GDGCHC | 1 cut(s) | 288 |
| SfaNI | GCATC | 2 cut(s) | 748, 1858 |
| SinI | GGWCC | 4 cut(s) | 295, 706, 807, 817 |
| SspI | AATATT | 1 cut(s) | 533 |
| SspMI | CTAG | 3 cut(s) | 473, 860, 1733 |
| StyD4I | CCNGG | 4 cut(s) | 39, 834, 1204, 1468 |
| StyI | CCWWGG | 2 cut(s) | 1326, 1590 |
| TaaI | ACNGT | 2 cut(s) | 594, 959 |
| TaiI | ACGT | 4 cut(s) | 702, 869, 1347, 1375 |
| TaqI | TCGA | 2 cut(s) | 640, 735 |
| TaqII | GACCGA | 1 cut(s) | 1702 |
| TatI | WGTACW | 2 cut(s) | 654, 1126 |
| TauI | GCSGC | 2 cut(s) | 1171, 1435 |
| TfiI | GAWTC | 6 cut(s) | 47, 73, 175, 186, 345, 888 |
| Tru1I | TTAA | 9 cut(s) | 128, 387, 752, 798, 905, 1046, 1053, 1106, 1703 |
| Tru9I | TTAA | 9 cut(s) | 128, 387, 752, 798, 905, 1046, 1053, 1106, 1703 |
| TscAI | CASTG | 1 cut(s) | 752 |
| TseFI | GTSAC | 4 cut(s) | 1152, 1373, 1416, 1630 |
| Tsp45I | GTSAC | 4 cut(s) | 1152, 1373, 1416, 1630 |
| TspDTI | ATGAA | 7 cut(s) | 73, 639, 731, 1634, 1827, 1842, 1878 |
| TspGWI | ACGGA | 2 cut(s) | 931, 1068 |
| TspRI | CASTG | 1 cut(s) | 752 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1371 |
| VpaK11BI | GGWCC | 4 cut(s) | 295, 706, 807, 817 |
| VspI | ATTAAT | 1 cut(s) | 1046 |
| XapI | RAATTY | 6 cut(s) | 116, 151, 628, 1715, 1759, 1844 |
| XceI | RCATGY | 1 cut(s) | 1830 |
| XmiI | GTMKAC | 2 cut(s) | 769, 846 |
| XspI | CTAG | 3 cut(s) | 473, 860, 1733 |
| ZraI | GACGTC | 1 cut(s) | 1345 |