Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0012203

Physical Location & Seq

Genomic Coordinates Reverse (-)

15634083 .. 15636805

Gene Structure 2723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2463 bp

ATGAAGACGTATAAAGTTTTGTCTTCATATCATTATTTCATTGTCGTTATTCTCACTCAGAGTCACAGCTCTTACCTCTACAACTCCACCTCCCCGCCACCGAGCCTTTTACGAAAACGAGCCGCTGAGCCGAAAGCAAACCAAAGCTCCGACCAGCCGAAGTTTCCTAAGTTGGTTCGTGGAATCCGAAAACTATCGGAGAATCCGAGCACCTCGATTGAACCCCTCAACAACTATGCGCTCAAACAGGCTCTTCAAGGACATGTGGAATCTGGGTCCATAGAGGATGCACTCCGGGTGTTTGAGAAAATGTCCCATTCAGATACGTATTACTGGAATGTTATGATTAGAGGTCTCACTGATAACGGGTTGTTCCGGGAGGCGATTGGTTTTTATCATAGGATGCAAAGTGAAGGTGTTCGAGCCGATAATTATACCTACCCATTTGTGATCAAGGCTTGTGGTGGGTTGTTGTCGTTGGATGAAGGACAAAAGGTTCATGGGAAGTTGTTTAAGGTCGGGTTGGATTTGGATGTTTATATCGGTAACTCGCTTTGTGCTGCGTATGCAAAACTTGGTTGCATAGAGTATGCAGAGAGAGTGTTTGACGAAATGCCTGTTAAAGACTTGGTTTCTTGGAATTCTATGATTGGCGGGTATGCTGCTGTTGGGGATGGTTGGAGGGCGATGGTTTGTTTTCAGGAAATGCAGGTGCTCGGTATGAAGCCTGATAGATTCAGTATGATTGGCGGTCTTAACGCGTGTGCTATTGATTGCTTTCTCCAACCCGGGAAGGAAATCCATTGCCAGGTTCTTAAATGTATGCTTGAATCAGATGTCATGGTGCACACCTCGCTTATCGACATGTACCACAAATGTGGTAGAGTGGACTATGCAGAGAGGTTGTTTGATGAAATTTGCACCAAGAATGTTGTGGTTTGGAATGCAATGATACATGGGTATACTCTAAATGCTCAGCCGCTTGAGTCACTTTCTTGCTTGAAAAAAATGCAAGAGGCAGATAAGTTGATTCCTGATGCTATCACAATGATCAATTTTCTTCCCTCTTGCACACAACTAGGAGCCCTATTGGAAGGTAAATCAATCCATGGCTATGCCATTAGACGAGGTTTTCTCCCTCATATTGTATTTGAAACTGCACTGATTGATTTGTACGGTGCCTGCGGCAGGATAAATTTGGCAGAACGTATATTTGGTCAGCTAATTGAAAAGAACTTGATATCGTGGAATAGCATGATTTCTGCATATGTACAAAGTGGACATAACAGGGAAGCCTTGGAATTATTTTGGGATCTCTTGAATGAACCGCTTGAACCGGATGCAATTACATTTTCAAGCATCATACCTGCCTATTGTGAAGTAGCATCCATTGGGGAGCGGAAGCAAATTCATGGTTGTATCACAAAATTGGAGCACAACTCAAATACATTAATCTTGAATGCAACTGTTTACATGTATGCAAAATGTGGGTATCTGGAGACAGCGCGAGAAGTTTTTGATAGGATGATATTCAGGGATACCAGTTCGTGGAACACTATAATTATGGCTTGTGCAATTCATGGGTTTGGGAGAATATCCATCGAGTTTTTCTCCAAAATGAGAGACAATGGCATTCAGCCTAATGAGAGCACATTTGTTTCCTTGTTAATGGCGTGTAGTGTTTCTGGCATGGTTGACGAGGGTTGGAAATACTATAGCTCGATGAAAAGAGACTATGGTATTGATCCTGGAATAGAGCACTGTGGTTGTATGATCGATCTTCTTGGTCGAACAGGTAATCTTGACCGTGCCAAGATTTTTATCGAGGAAATGTCGCTGCTGCCCACAGCCAGAATTTGGGGGTCATTACTGACAGCTAGTAGAAACAACAGAAACATAGAGTTAGCTGAACTTGCTGCTGAGCATATTTTGTCCTCGGAACATGATAATACCGGGTGTTATATCTTGCTTGCGAATATGTATTCTGAAGCTGGGAGGTGGGAAGATGTAGAACGGCTTAAATCTCATATGAAGCAAAGAGGACTCCGGAAAACTGTCGCGTGCAGCTTTGTTGAGACCAAATGTAGGCCTTACAGATTCATCAACCAAGATACGACCCACGTTGAAACCTACATGATTTATGCTGTTTTAGATTTGATTCTGAGGAAGATAGGGGAAGATAAATATGTTAACAGTATCACCAAGTTCAGACCGTTGGATTTGAAGAGAAAGAGAGCAAATTCCGCAGAGAGTCACAGTGTAAGATTGGCAATTTGTTTTGGTTTGATCTCCACAGAAATCAGACACCCCGTTGTTGTTAGGAAGAACACGAGAATCTGTGAAGAATGCCATAGCGCTGCAAAGAAGATTTCAGAGATCACCAAGAGAGAGATAATTGTAGGAGATTCGAAGGTCTTTCACCACTTCATTGACGGCAATTGCTCTTGTCGTGATTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

821

Amino Acids

92.91

Weight (kDa)

7.28

Isoelectric Point (pI)

48.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	108 - 154	1.3e-09	PPR repeat family
PPR	PF01535	112 - 140	8.2e-06	PPR repeat
PPR_2	PF13041	209 - 249	2.2e-06	PPR repeat family
PPR_2	PF13041	412 - 459	1.7e-10	PPR repeat family
PPR_2	PF13041	513 - 559	2.3e-07	PPR repeat family
E_motif	PF20431	632 - 692	1.1e-17	E motif
DYW_deaminase	PF14432	749 - 820	1.5e-23	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0012203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35130
fragaria_vesca	FvH4_2g15700
malus_domestica	MD05G1126100.v1.1 MD10G1128900.v1.1
prunus_persica	Prupe.8G169500_v2.0.a1
pyrus_communis	pycom05g12020 pycom05g12050 pycom05g12170 pycom10g11050
rosa_chinensis	RchiOBHm_Chr6g0279001
rosa_laevigata	RLG00000013176
rosa_multiflora	Rmu_sc0002080.1_g000022
rosa_roxburghii	Rroxscaffold_7G00189240
rosa_rugosa	Rorug06G0120900
rosa_samantha	Rh6AG229800 Rh6BG234800 Rh6CG236900 Rh6DG228600
rosa_wichuraiana	Rw6G020130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	700
Acc36I	ACCTGC	2 cut(s)	700, 1375
AccB1I	GGYRCC	1 cut(s)	1178
AccB7I	CCANNNNNTGG	2 cut(s)	1548, 1857
AccBSI	CCGCTC	1 cut(s)	1399
AccI	GTMKAC	1 cut(s)	962
AccII	CGCG	3 cut(s)	761, 1507, 2060
AccIII	TCCGGA	1 cut(s)	2046
AciI	CCGC	9 cut(s)	95, 123, 654, 750, 980, 1185, 1328, 1399, 2244
AclWI	GGATC	2 cut(s)	1320, 1739
AcsI	RAATTY	6 cut(s)	640, 915, 1195, 1407, 1854, 2239
AcuI	CTGAAG	1 cut(s)	2007
AfaI	GTAC	3 cut(s)	869, 1175, 1272
AfeI	AGCGCT	1 cut(s)	2356
AfiI	CCNNNNNNNGG	5 cut(s)	808, 1188, 1548, 1857, 2085
AflIII	ACRYGT	4 cut(s)	262, 759, 864, 1473
AjnI	CCWGG	2 cut(s)	807, 1747
AjuI	GAANNNNNNNTTGG	2 cut(s)	1197, 1229
AleI	CACNNNNGTG	1 cut(s)	876
AloI	GAACNNNNNNTCC	2 cut(s)	480, 512
AluBI	AGCT	8 cut(s)	69, 147, 1222, 1719, 1877, 1907, 1991, 2067
AluI	AGCT	8 cut(s)	69, 147, 1222, 1719, 1877, 1907, 1991, 2067
Alw21I	GWGCWC	6 cut(s)	212, 717, 849, 1437, 1652, 1761
Alw26I	GTCTC	5 cut(s)	359, 1493, 1617, 1725, 2069
Alw44I	GTGCAC	1 cut(s)	845
AlwI	GGATC	2 cut(s)	1320, 1739
Ama87I	CYCGRG	1 cut(s)	788
Aor13HI	TCCGGA	1 cut(s)	2046
Aor51HI	AGCGCT	1 cut(s)	2356
AoxI	GGCC	1 cut(s)	2087
ApaLI	GTGCAC	1 cut(s)	845
ApeKI	GCWGC	7 cut(s)	560, 662, 1837, 1840, 1916, 2064, 2357
ApoI	RAATTY	6 cut(s)	640, 915, 1195, 1407, 1854, 2239
AseI	ATTAAT	1 cut(s)	1451
Asp700I	GAANNNNTTC	1 cut(s)	417
AspLEI	GCGC	3 cut(s)	241, 1507, 2357
AspS9I	GGNCC	1 cut(s)	276
AsuC2I	CCSGG	5 cut(s)	296, 377, 789, 790, 1954
AsuHPI	GGTGA	3 cut(s)	2191, 2371, 2411
AsuII	TTCGAA	1 cut(s)	2408
AvaI	CYCGRG	1 cut(s)	788
AvaII	GGWCC	1 cut(s)	276
BaeGI	GKGCMC	1 cut(s)	849
BaeI	ACNNNNGTAYC	2 cut(s)	944, 977
BanI	GGYRCC	1 cut(s)	1178
BanII	GRGCYC	1 cut(s)	1087
BauI	CACGAG	1 cut(s)	2329
BbsI	GAAGAC	2 cut(s)	11, 15
Bbv12I	GWGCWC	6 cut(s)	212, 717, 849, 1437, 1652, 1761
BbvI	GCAGC	7 cut(s)	547, 649, 1824, 1827, 1903, 2076, 2344
BccI	CCATC	3 cut(s)	668, 682, 1607
BceAI	ACGGC	2 cut(s)	2030, 2449
BciT130I	CCWGG	2 cut(s)	809, 1749
BciVI	GTATCC	1 cut(s)	1531
BclI	TGATCA	2 cut(s)	450, 1050
BcnI	CCSGG	5 cut(s)	296, 377, 789, 790, 1954
BcoDI	GTCTC	5 cut(s)	359, 1493, 1617, 1725, 2069
BfaI	CTAG	2 cut(s)	1079, 1878
BfmI	CTRYAG	1 cut(s)	1714
BfoI	RGCGCY	1 cut(s)	2358
BfuAI	ACCTGC	2 cut(s)	700, 1375
BfuI	GTATCC	1 cut(s)	1531
BlpI	GCTNAGC	3 cut(s)	126, 975, 1920
Bme1390I	CCNGG	7 cut(s)	296, 377, 789, 790, 809, 1749, 1954
Bme18I	GGWCC	1 cut(s)	276
BmeT110I	CYCGRG	1 cut(s)	788
BmgT120I	GGNCC	1 cut(s)	276
BmiI	GGNNCC	3 cut(s)	277, 1084, 1180
BmrFI	CCNGG	7 cut(s)	296, 377, 789, 790, 809, 1749, 1954
BmsI	GCATC	6 cut(s)	277, 393, 1027, 1330, 1368, 1394
BpiI	GAAGAC	2 cut(s)	11, 15
BplI	GAGNNNNNCTC	6 cut(s)	1119, 1151, 1424, 1456, 1595, 1627
BpmI	CTGGAG	1 cut(s)	1517
Bpu1102I	GCTNAGC	3 cut(s)	126, 975, 1920
Bpu14I	TTCGAA	1 cut(s)	2408
BpuEI	CTTGAG	1 cut(s)	1004
BpuMI	CCSGG	5 cut(s)	296, 377, 789, 790, 1954
Bsa29I	ATCGAT	1 cut(s)	1776
BsaAI	YACGTR	1 cut(s)	327
BsaBI	GATNNNNATC	1 cut(s)	1820
BsaI	GGTCTC	2 cut(s)	359, 2069
BsaJI	CCNNGG	4 cut(s)	788, 1108, 1296, 1935
BsaWI	WCCGGW	2 cut(s)	1336, 2046
BsaXI	ACNNNNNCTCC	4 cut(s)	74, 104, 131, 161
Bsc4I	CCNNNNNNNGG	5 cut(s)	808, 1188, 1548, 1857, 2085
Bse1I	ACTGG	3 cut(s)	338, 1542, 2462
Bse3DI	GCAATG	2 cut(s)	802, 954
Bse8I	GATNNNNATC	1 cut(s)	1820
BseAI	TCCGGA	1 cut(s)	2046
BseBI	CCWGG	2 cut(s)	809, 1749
BseCI	ATCGAT	1 cut(s)	1776
BseDI	CCNNGG	4 cut(s)	788, 1108, 1296, 1935
BseGI	GGATG	8 cut(s)	292, 408, 487, 538, 679, 1345, 1385, 1530
BseJI	GATNNNNATC	1 cut(s)	1820
BseLI	CCNNNNNNNGG	5 cut(s)	808, 1188, 1548, 1857, 2085
BseMI	GCAATG	2 cut(s)	802, 954
BseMII	CTCAG	5 cut(s)	71, 117, 989, 1911, 2153
BseNI	ACTGG	3 cut(s)	338, 1542, 2462
BseSI	GKGCMC	1 cut(s)	849
BseXI	GCAGC	7 cut(s)	547, 649, 1824, 1827, 1903, 2076, 2344
BseYI	CCCAGC	1 cut(s)	1991
BsgI	GTGCAG	2 cut(s)	1143, 2083
Bsh1236I	CGCG	3 cut(s)	761, 1507, 2060
BshFI	GGCC	1 cut(s)	2089
BshNI	GGYRCC	1 cut(s)	1178
BshVI	ATCGAT	1 cut(s)	1776
BsiHKAI	GWGCWC	6 cut(s)	212, 717, 849, 1437, 1652, 1761
BsiHKCI	CYCGRG	1 cut(s)	788
BsiSI	CCGG	6 cut(s)	295, 376, 789, 1337, 1953, 2047
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	5 cut(s)	808, 1188, 1548, 1857, 2085
BsmAI	GTCTC	5 cut(s)	359, 1493, 1617, 1725, 2069
BsmFI	GGGAC	1 cut(s)	298
BsmI	GAATGC	4 cut(s)	949, 1465, 1632, 2351
BsnI	GGCC	1 cut(s)	2089
Bso31I	GGTCTC	2 cut(s)	359, 2069
BsoBI	CYCGRG	1 cut(s)	788
Bsp119I	TTCGAA	1 cut(s)	2408
Bsp1286I	GDGCHC	7 cut(s)	212, 717, 849, 1087, 1437, 1652, 1761
Bsp13I	TCCGGA	1 cut(s)	2046
Bsp1407I	TGTACA	1 cut(s)	1270
Bsp143I	GATC	8 cut(s)	450, 1050, 1312, 1744, 1773, 1777, 2286, 2376
Bsp1720I	GCTNAGC	3 cut(s)	126, 975, 1920
Bsp19I	CCATGG	1 cut(s)	1108
BspACI	CCGC	9 cut(s)	95, 123, 654, 750, 980, 1185, 1328, 1399, 2244
BspANI	GGCC	1 cut(s)	2089
BspCNI	CTCAG	5 cut(s)	70, 118, 988, 1912, 2154
BspDI	ATCGAT	1 cut(s)	1776
BspEI	TCCGGA	1 cut(s)	2046
BspFNI	CGCG	3 cut(s)	761, 1507, 2060
BspLI	GGNNCC	3 cut(s)	277, 1084, 1180
BspMI	ACCTGC	2 cut(s)	700, 1375
BspPI	GGATC	2 cut(s)	1320, 1739
BspQI	GCTCTTC	1 cut(s)	258
BspT104I	TTCGAA	1 cut(s)	2408
BspT107I	GGYRCC	1 cut(s)	1178
BspTNI	GGTCTC	2 cut(s)	359, 2069
BsrBI	CCGCTC	1 cut(s)	1399
BsrDI	GCAATG	2 cut(s)	802, 954
BsrGI	TGTACA	1 cut(s)	1270
BsrI	ACTGG	3 cut(s)	338, 1542, 2462
BssECI	CCNNGG	4 cut(s)	788, 1108, 1296, 1935
BssMI	GATC	8 cut(s)	450, 1050, 1312, 1744, 1773, 1777, 2286, 2376
BssNAI	GTATAC	1 cut(s)	963
BssSI	CACGAG	1 cut(s)	2329
BssT1I	CCWWGG	2 cut(s)	1108, 1296
Bst1107I	GTATAC	1 cut(s)	963
Bst2BI	CACGAG	1 cut(s)	2329
Bst2UI	CCWGG	2 cut(s)	809, 1749
Bst4CI	ACNGT	8 cut(s)	1178, 1468, 1763, 1808, 2056, 2195, 2214, 2258
Bst6I	CTCTTC	2 cut(s)	258, 2219
BstAUI	TGTACA	1 cut(s)	1270
BstBAI	YACGTR	1 cut(s)	327
BstBI	TTCGAA	1 cut(s)	2408
BstC8I	GCNNGC	3 cut(s)	1183, 1971, 2062
BstDEI	CTNAG	6 cut(s)	57, 126, 168, 975, 1920, 2162
BstDSI	CCRYGG	1 cut(s)	1108
BstENI	CCTNNNNNAGG	1 cut(s)	1186
BstF5I	GGATG	8 cut(s)	292, 408, 487, 538, 679, 1345, 1385, 1530
BstFNI	CGCG	3 cut(s)	761, 1507, 2060
BstH2I	RGCGCY	1 cut(s)	2358
BstHHI	GCGC	3 cut(s)	241, 1507, 2357
BstKTI	GATC	8 cut(s)	453, 1053, 1315, 1747, 1776, 1780, 2289, 2379
BstMAI	GTCTC	5 cut(s)	359, 1493, 1617, 1725, 2069
BstMBI	GATC	8 cut(s)	450, 1050, 1312, 1744, 1773, 1777, 2286, 2376
BstMWI	GCNNNNNNNGC	4 cut(s)	566, 853, 1913, 2243
BstNI	CCWGG	2 cut(s)	809, 1749
BstNSI	RCATGY	3 cut(s)	266, 868, 1477
BstSCI	CCNGG	7 cut(s)	294, 375, 787, 788, 807, 1747, 1952
BstSFI	CTRYAG	1 cut(s)	1714
BstSLI	GKGCMC	1 cut(s)	849
BstSNI	TACGTA	1 cut(s)	327
BstUI	CGCG	3 cut(s)	761, 1507, 2060
BstV1I	GCAGC	7 cut(s)	547, 649, 1824, 1827, 1903, 2076, 2344
BstV2I	GAAGAC	2 cut(s)	11, 15
BstX2I	RGATCY	1 cut(s)	1312
BstXI	CCANNNNNNTGG	1 cut(s)	878
BstYI	RGATCY	1 cut(s)	1312
BstZ17I	GTATAC	1 cut(s)	963
Bsu15I	ATCGAT	1 cut(s)	1776
BsuI	GTATCC	1 cut(s)	1531
BsuRI	GGCC	1 cut(s)	2089
BsuTUI	ATCGAT	1 cut(s)	1776
BtgI	CCRYGG	1 cut(s)	1108
BtgZI	GCGATG	1 cut(s)	701
BtsCI	GGATG	8 cut(s)	292, 408, 487, 538, 679, 1345, 1385, 1530
BtsIMutI	CAGTG	4 cut(s)	357, 1160, 1759, 2263
BveI	ACCTGC	2 cut(s)	700, 1375
Cac8I	GCNNGC	3 cut(s)	1183, 1971, 2062
CfoI	GCGC	3 cut(s)	241, 1507, 2357
Cfr13I	GGNCC	1 cut(s)	276
Cfr9I	CCCGGG	1 cut(s)	788
ClaI	ATCGAT	1 cut(s)	1776
Csp6I	GTAC	3 cut(s)	868, 1174, 1271
CspCI	CAANNNNNGTGG	2 cut(s)	442, 477
CviQI	GTAC	3 cut(s)	868, 1174, 1271
DdeI	CTNAG	6 cut(s)	57, 126, 168, 975, 1920, 2162
DpnI	GATC	8 cut(s)	452, 1052, 1314, 1746, 1775, 1779, 2288, 2378
DpnII	GATC	8 cut(s)	450, 1050, 1312, 1744, 1773, 1777, 2286, 2376
Eam1104I	CTCTTC	2 cut(s)	258, 2219
EarI	CTCTTC	2 cut(s)	258, 2219
Eco105I	TACGTA	1 cut(s)	327
Eco130I	CCWWGG	2 cut(s)	1108, 1296
Eco147I	AGGCCT	1 cut(s)	2089
Eco24I	GRGCYC	1 cut(s)	1087
Eco31I	GGTCTC	2 cut(s)	359, 2069
Eco32I	GATATC	1 cut(s)	1242
Eco47I	GGWCC	1 cut(s)	276
Eco47III	AGCGCT	1 cut(s)	2356
Eco57I	CTGAAG	1 cut(s)	2007
Eco88I	CYCGRG	1 cut(s)	788
EcoNI	CCTNNNNNAGG	1 cut(s)	1186
EcoRI	GAATTC	1 cut(s)	640
EcoRII	CCWGG	2 cut(s)	807, 1747
EcoRV	GATATC	1 cut(s)	1242
EcoT14I	CCWWGG	2 cut(s)	1108, 1296
EcoT38I	GRGCYC	1 cut(s)	1087
ErhI	CCWWGG	2 cut(s)	1108, 1296
FaqI	GGGAC	1 cut(s)	298
FauI	CCCGC	2 cut(s)	102, 647
FauNDI	CATATG	2 cut(s)	1267, 2028
FbaI	TGATCA	2 cut(s)	450, 1050
FblI	GTMKAC	1 cut(s)	962
FokI	GGATG	8 cut(s)	299, 415, 494, 545, 686, 1352, 1372, 1537
FriOI	GRGCYC	1 cut(s)	1087
FspBI	CTAG	2 cut(s)	1079, 1878
GlaI	GCGC	3 cut(s)	240, 1506, 2356
GsaI	CCCAGC	1 cut(s)	1995
GsuI	CTGGAG	1 cut(s)	1517
HaeII	RGCGCY	1 cut(s)	2358
HaeIII	GGCC	1 cut(s)	2089
HapII	CCGG	6 cut(s)	295, 376, 789, 1337, 1953, 2047
HhaI	GCGC	3 cut(s)	241, 1507, 2357
Hin6I	GCGC	3 cut(s)	239, 1505, 2355
HinP1I	GCGC	3 cut(s)	239, 1505, 2355
HincII	GTYRAC	2 cut(s)	1696, 2191
HindII	GTYRAC	2 cut(s)	1696, 2191
HpaI	GTTAAC	1 cut(s)	2191
HpaII	CCGG	6 cut(s)	295, 376, 789, 1337, 1953, 2047
HphI	GGTGA	3 cut(s)	2191, 2371, 2411
Hpy166II	GTNNAC	7 cut(s)	847, 889, 963, 1280, 1471, 1696, 2191
Hpy188III	TCNNGA	8 cut(s)	701, 1034, 1318, 1456, 1496, 1802, 2047, 2450
Hpy8I	GTNNAC	7 cut(s)	847, 889, 963, 1280, 1471, 1696, 2191
HpyAV	CCTTC	5 cut(s)	407, 479, 787, 1088, 2404
HpyCH4III	ACNGT	8 cut(s)	1178, 1468, 1763, 1808, 2056, 2195, 2214, 2258
HpyCH4IV	ACGT	4 cut(s)	8, 326, 1207, 2121
HpyF10VI	GCNNNNNNNGC	4 cut(s)	566, 853, 1913, 2243
HpyF3I	CTNAG	6 cut(s)	57, 126, 168, 975, 1920, 2162
HpySE526I	ACGT	4 cut(s)	8, 326, 1207, 2121
HspAI	GCGC	3 cut(s)	239, 1505, 2355
Kpn2I	TCCGGA	1 cut(s)	2046
Ksp22I	TGATCA	2 cut(s)	450, 1050
KspAI	GTTAAC	1 cut(s)	2191
Kzo9I	GATC	8 cut(s)	450, 1050, 1312, 1744, 1773, 1777, 2286, 2376
LguI	GCTCTTC	1 cut(s)	258
LmnI	GCTCC	4 cut(s)	152, 1082, 1396, 1432
Lsp1109I	GCAGC	7 cut(s)	547, 649, 1824, 1827, 1903, 2076, 2344
LweI	GCATC	6 cut(s)	277, 393, 1027, 1330, 1368, 1394
MaeI	CTAG	2 cut(s)	1079, 1878
MaeII	ACGT	4 cut(s)	8, 326, 1207, 2121
MaeIII	GTNAC	4 cut(s)	62, 545, 987, 2252
MalI	GATC	8 cut(s)	452, 1052, 1314, 1746, 1775, 1779, 2288, 2378
MbiI	CCGCTC	1 cut(s)	1399
MboI	GATC	8 cut(s)	450, 1050, 1312, 1744, 1773, 1777, 2286, 2376
MfeI	CAATTG	1 cut(s)	2437
MflI	RGATCY	1 cut(s)	1312
MhlI	GDGCHC	7 cut(s)	212, 717, 849, 1087, 1437, 1652, 1761
MluI	ACGCGT	1 cut(s)	759
MlyI	GAGTC	4 cut(s)	70, 995, 2037, 2260
MmeI	TCCRAC	7 cut(s)	174, 459, 504, 659, 808, 1685, 2196
MroI	TCCGGA	1 cut(s)	2046
MroXI	GAANNNNTTC	1 cut(s)	417
MseI	TTAA	8 cut(s)	513, 621, 756, 816, 1451, 1667, 2019, 2190
MslI	CAYNNNNRTG	2 cut(s)	876, 1113
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	6 cut(s)	295, 376, 789, 1337, 1953, 2047
MspR9I	CCNGG	7 cut(s)	296, 377, 789, 790, 809, 1749, 1954
MunI	CAATTG	1 cut(s)	2437
Mva1269I	GAATGC	4 cut(s)	949, 1465, 1632, 2351
MvaI	CCWGG	2 cut(s)	809, 1749
MvnI	CGCG	3 cut(s)	761, 1507, 2060
MwoI	GCNNNNNNNGC	4 cut(s)	566, 853, 1913, 2243
NciI	CCSGG	5 cut(s)	296, 377, 789, 790, 1954
NcoI	CCATGG	1 cut(s)	1108
NdeI	CATATG	2 cut(s)	1267, 2028
NdeII	GATC	8 cut(s)	450, 1050, 1312, 1744, 1773, 1777, 2286, 2376
NlaIV	GGNNCC	3 cut(s)	277, 1084, 1180
NmuCI	GTSAC	3 cut(s)	62, 987, 2252
NspI	RCATGY	3 cut(s)	266, 868, 1477
NspV	TTCGAA	1 cut(s)	2408
OliI	CACNNNNGTG	1 cut(s)	876
PaqCI	CACCTGC	1 cut(s)	700
PceI	AGGCCT	1 cut(s)	2089
PciI	ACATGT	3 cut(s)	262, 864, 1473
PciSI	GCTCTTC	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	2 cut(s)	184, 203
PctI	GAATGC	4 cut(s)	949, 1465, 1632, 2351
PdmI	GAANNNNTTC	1 cut(s)	417
PflMI	CCANNNNNTGG	2 cut(s)	1548, 1857
PfoI	TCCNGGA	2 cut(s)	375, 1747
PleI	GAGTC	4 cut(s)	69, 994, 2037, 2259
PpsI	GAGTC	4 cut(s)	69, 994, 2037, 2259
Ppu21I	YACGTR	1 cut(s)	327
PscI	ACATGT	3 cut(s)	262, 864, 1473
PshBI	ATTAAT	1 cut(s)	1451
Psp6I	CCWGG	2 cut(s)	807, 1747
PspFI	CCCAGC	1 cut(s)	1991
PspGI	CCWGG	2 cut(s)	807, 1747
PspN4I	GGNNCC	3 cut(s)	277, 1084, 1180
PspPI	GGNCC	1 cut(s)	276
PsuI	RGATCY	1 cut(s)	1312
RsaI	GTAC	3 cut(s)	869, 1175, 1272
RsaNI	GTAC	3 cut(s)	868, 1174, 1271
RseI	CAYNNNNRTG	2 cut(s)	876, 1113
SapI	GCTCTTC	1 cut(s)	258
SaqAI	TTAA	8 cut(s)	513, 621, 756, 816, 1451, 1667, 2019, 2190
Sau3AI	GATC	8 cut(s)	450, 1050, 1312, 1744, 1773, 1777, 2286, 2376
Sau96I	GGNCC	1 cut(s)	276
SchI	GAGTC	4 cut(s)	70, 995, 2037, 2260
ScrFI	CCNGG	7 cut(s)	296, 377, 789, 790, 809, 1749, 1954
SduI	GDGCHC	7 cut(s)	212, 717, 849, 1087, 1437, 1652, 1761
SfaNI	GCATC	6 cut(s)	277, 393, 1027, 1330, 1368, 1394
SfcI	CTRYAG	1 cut(s)	1714
SfuI	TTCGAA	1 cut(s)	2408
SinI	GGWCC	1 cut(s)	276
SmaI	CCCGGG	1 cut(s)	790
SmiMI	CAYNNNNRTG	2 cut(s)	876, 1113
SmlI	CTYRAG	1 cut(s)	983
SmoI	CTYRAG	1 cut(s)	983
SnaBI	TACGTA	1 cut(s)	327
SseBI	AGGCCT	1 cut(s)	2089
SsiI	CCGC	9 cut(s)	95, 123, 654, 750, 980, 1185, 1328, 1399, 2244
SspMI	CTAG	2 cut(s)	1079, 1878
StuI	AGGCCT	1 cut(s)	2089
StyD4I	CCNGG	7 cut(s)	294, 375, 787, 788, 807, 1747, 1952
StyI	CCWWGG	2 cut(s)	1108, 1296
TaaI	ACNGT	8 cut(s)	1178, 1468, 1763, 1808, 2056, 2195, 2214, 2258
TaiI	ACGT	4 cut(s)	11, 329, 1210, 2124
TaqI	TCGA	9 cut(s)	215, 421, 861, 1602, 1721, 1776, 1789, 1824, 2408
TatI	WGTACW	1 cut(s)	1270
TauI	GCSGC	3 cut(s)	125, 982, 1188
Tru1I	TTAA	8 cut(s)	513, 621, 756, 816, 1451, 1667, 2019, 2190
Tru9I	TTAA	8 cut(s)	513, 621, 756, 816, 1451, 1667, 2019, 2190
TscAI	CASTG	4 cut(s)	364, 1167, 1766, 2263
TseFI	GTSAC	3 cut(s)	62, 987, 2252
TseI	GCWGC	7 cut(s)	560, 662, 1837, 1840, 1916, 2064, 2357
Tsp45I	GTSAC	3 cut(s)	62, 987, 2252
TspMI	CCCGGG	1 cut(s)	788
TspRI	CASTG	4 cut(s)	364, 1167, 1766, 2263
Van91I	CCANNNNNTGG	2 cut(s)	1548, 1857
VneI	GTGCAC	1 cut(s)	845
VpaK11BI	GGWCC	1 cut(s)	276
VspI	ATTAAT	1 cut(s)	1451
XagI	CCTNNNNNAGG	1 cut(s)	1186
XapI	RAATTY	6 cut(s)	640, 915, 1195, 1407, 1854, 2239
XceI	RCATGY	3 cut(s)	266, 868, 1477
XcmI	CCANNNNNNNNNTGG	1 cut(s)	931
XmaI	CCCGGG	1 cut(s)	788
XmiI	GTMKAC	1 cut(s)	962
XmnI	GAANNNNTTC	1 cut(s)	417
XspI	CTAG	2 cut(s)	1079, 1878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.