Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0012203

Physical Location & Seq

Genomic Coordinates Reverse (-)

40249214 .. 40252084

Gene Structure 2871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG236900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2412 bp

ATGACTCCAACTCTCGCTCTCAACTATTATCTCTACACCTCCACAGCACCACCCAACCTCTCTCGAAAACGCGCCGCCGAGCCCAGAGCAAACCAGGGCGCCGACCCGCCAAGATTTCCCAAATGGGTTCGCAAAGCCGCAAAACCACCAATGAAGTCAACCACACTGATTGAACAGCACAGCTCTTCGCTCAAACAGGCTCTTCATGACCATGTTCAATCTGGGTCCATGGAAGACGCGCTCTGGGTGTTTGAGAAAATGAACCAGTCAGATGCGTACAACTGGAATATCGTTATCAGAGGTTTTACGGATAATGGGTTGTTCCGAGAGGCGATTGAGTTTTATCGGAGAATGGAATTTGAAGGTGTTGGAGCGGATAACTATACTTTCCCATTTGTAATCAAGGCCTGTGGTGGGTCCTTTTCGTTGGCCGAAGTCCGAAGGGTTCACGGGAAGTTGTTCAAGGTTGGGTTGGTTTCGGACGTATACATATGTAACTCTCTGTGTGCTGTGTATGCGAAACTTGGTTGCGTAGAAGATGCAGAGAAGGTGTTTGAAGAAATGCCTGTTAAAGACTTGGTTTCTTGGAATTCGATGATTGGTGGGTATGTTGCAGTTGGGGATGGATGGAGTGCAGTGGTTAGTTTTCAAGAGATGCTGGTGGTTGGGATAATGCCGGATAGATTCAGCATGATCGGCGTTCTTAATGCTTGTGCTATCGAGGGTTTGCTCCAAACTGGGAAGGAAATCCATTGCCAGGTGATGAAATGTGTGGTTCAATCAGATGTCATGGTTCAAACCTCGCTTATTGACATGTACCACAAATGCGGTAGACTAGACTATGCGGAGAGGTTGTTTGATAAGATTTCTCAAAAGAATGTTGTGGTTTGGAATGCGATGATACACGGATATGCGCTAAATGCTCGTCCCGTGGAGTCTTTTTCTTGCTTGAAAACGATGCAAGAGACTGATAAGTTGAGGCCTGATGCTATTACGATGATAAATTTACTCCCTTCTTGCACACAAGTAGGAGCCCTCATGGAGGGAAAATCTATCCATGGCTACGCAATTAGACATGGGTTTCTCCCTCATATTGTCTTGGAAACGGCTCTGATTGAGTTGTATGGTGCGTGCAGCAGGGTAAAATTTGCAGAACGTATATTTGGCCAACTGGCTCAAAAGAATTTGATATCATGGAACACCATGATTTCTGCATATGTACACAATGGACGGAATTGGGAAGCCTTGGAACTATTTCAGGATCTTGTGAGTGAACCTCTTGACCCAGACCCAATTACGATTTCAAGCATCCTACCTGCCTATTCTGAAGTAGCATCATTAGGGCAGCGGAAGCAAATTCATGGTTATATCTCAAAATTGGAGCATCATTCGAATACCTTCATCTTGAATTCAACTATTTACATGTATGCAAAATGTGGGCATCTAGGTACTGCTCAAGAAATCTTTGATAGGATGATATACAGGGATGTCAGCTCATGGAACACTATTATTATGGCTTATGCCATTCATGGGTTTGGGAGAAGATCAACTCGGTTGTTCTCCGAAATGGTAGAAAAGGGCATTCAACCAAATGAGAGCACTTTTGTTTCCCTGTTAACAGCTTGTAGCATTTCTGGCATGGTCGATGAGGGTTGGAAATACTATGCATCTATGAAATTAGAGTACGGTATTGATCCTGGAATAGAGCACTACGGTTGTATGATTGATCTTCTTGGGCGTACAGGTAATCTTGACCAAGCCAAGACTTTTATTGACGAAATGCCGTTGCTGCCCACAGCCAGAATCTGGGGTTCTTTACTGACAGCCAGTAGAAACAATAGAAACATAGAGTTAGCAGAGGTTGCTGCTGAGAACATTTTGTCCTTGGAACATGATAATACTGGGTGTTATGTCTTGCTTTCCAATATGTATGCTGAAGCTGGAAGGTGGGAAGATGTAAAACGGATCAAATTTCGTATGAAGCAAAAAGGACTGGAAAAAACTATTGGATGCAGCTATCTTGAGACCAAATGTAAGCCTTACAGGTTCATCAACCACGACAAGTCGCACGTTGAAAGTGACACGATTTATGAGGTTTTAGACGTAATCTTGAGGAAGATTGGGGAAGACAAGTATGTTCACAGTATCACCAAGTTCAGACCCTTGGATTTGATGAGAAAGAAACAGAATTCTGCAGAGCATCACAGTGTAAGATTGGCAATTTCTTATGGGCTGATCTCCACGAAACTCAGAGACCCGGTTCTTGTTAGAAGAAACACAAGAATATGCGAAGATTGCCATAATGCTGCTAAGAAGGTTTCAGAGATGACCAAGAGAGAGATAATAGTAGGGGATTCCAAGGTCTTTCACCACTTCAGAGATGGGAATTGCTCATGTGGTGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

803

Amino Acids

90.9

Weight (kDa)

7.76

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	91 - 137	9.6e-08	PPR repeat family
PPR_2	PF13041	192 - 239	6.3e-06	PPR repeat family
PPR_2	PF13041	395 - 441	6.6e-08	PPR repeat family
PPR	PF01535	397 - 424	1.4e-06	PPR repeat
PPR_2	PF13041	495 - 542	7e-10	PPR repeat family
E_motif	PF20431	615 - 675	4e-20	E motif
DYW_deaminase	PF14432	728 - 803	1.7e-25	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35130
fragaria_vesca	FvH4_2g15700
malus_domestica	MD05G1126100.v1.1 MD10G1128900.v1.1
prunus_persica	Prupe.8G169500_v2.0.a1
pyrus_communis	pycom05g12020 pycom05g12050 pycom05g12170 pycom10g11050
rosa_chinensis	RchiOBHm_Chr6g0279001
rosa_laevigata	RLG00000013176
rosa_multiflora	Rmu_sc0002080.1_g000022
rosa_roxburghii	Rroxscaffold_7G00189240
rosa_rugosa	Rorug06G0120900
rosa_samantha	Rh6AG229800 Rh6BG234800 Rh6CG236900 Rh6DG228600
rosa_wichuraiana	Rw6G020130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1324
AccB1I	GGYRCC	1 cut(s)	98
AccB7I	CCANNNNNTGG	1 cut(s)	1806
AccBSI	CCGCTC	1 cut(s)	374
AccI	GTMKAC	2 cut(s)	486, 832
AccII	CGCG	2 cut(s)	72, 239
AciI	CCGC	7 cut(s)	75, 107, 138, 374, 828, 845, 1348
AclWI	GGATC	3 cut(s)	1269, 1688, 1973
AcoI	YGGCCR	2 cut(s)	429, 1165
AcsI	RAATTY	9 cut(s)	356, 589, 1003, 1145, 1183, 1356, 1408, 1970, 2188
AcuI	CTGAAG	3 cut(s)	1347, 1956, 2359
AcyI	GRCGYC	1 cut(s)	99
AfaI	GTAC	6 cut(s)	278, 818, 1221, 1450, 1685, 1741
AfiI	CCNNNNNNNGG	5 cut(s)	414, 757, 1042, 1530, 1806
AflIII	ACRYGT	2 cut(s)	813, 1422
AjnI	CCWGG	3 cut(s)	93, 756, 1696
AjuI	GAANNNNNNNTTGG	6 cut(s)	1146, 1178, 1285, 1317, 1989, 2021
AloI	GAACNNNNNNTCC	2 cut(s)	1865, 1897
AluBI	AGCT	5 cut(s)	183, 1494, 1622, 1940, 2016
AluI	AGCT	5 cut(s)	183, 1494, 1622, 1940, 2016
Alw21I	GWGCWC	2 cut(s)	1601, 1710
Alw26I	GTCTC	3 cut(s)	959, 2018, 2247
AlwI	GGATC	3 cut(s)	1269, 1688, 1973
AlwNI	CAGNNNCTG	1 cut(s)	1806
AoxI	GGCC	4 cut(s)	405, 429, 980, 1165
ApeKI	GCWGC	6 cut(s)	1134, 1345, 1789, 1865, 2013, 2306
ApoI	RAATTY	9 cut(s)	356, 589, 1003, 1145, 1183, 1356, 1408, 1970, 2188
Asp700I	GAANNNNTTC	3 cut(s)	458, 1254, 1397
AspLEI	GCGC	4 cut(s)	74, 101, 241, 916
AspS9I	GGNCC	2 cut(s)	225, 417
AsuC2I	CCSGG	1 cut(s)	2258
AsuHPI	GGTGA	4 cut(s)	772, 2140, 2360, 2411
AsuII	TTCGAA	1 cut(s)	1391
AvaII	GGWCC	2 cut(s)	225, 417
BalI	TGGCCA	1 cut(s)	1167
BanI	GGYRCC	1 cut(s)	98
BanII	GRGCYC	2 cut(s)	84, 1036
BbsI	GAAGAC	2 cut(s)	240, 2133
Bbv12I	GWGCWC	2 cut(s)	1601, 1710
BbvI	GCAGC	6 cut(s)	1146, 1357, 1776, 1852, 2025, 2293
BccI	CCATC	3 cut(s)	617, 621, 2375
BceAI	ACGGC	2 cut(s)	1122, 1768
BciT130I	CCWGG	3 cut(s)	95, 758, 1698
BcnI	CCSGG	1 cut(s)	2258
BcoDI	GTCTC	3 cut(s)	959, 2018, 2247
BfaI	CTAG	2 cut(s)	836, 1445
BfmI	CTRYAG	1 cut(s)	2193
BfoI	RGCGCY	1 cut(s)	102
BfuAI	ACCTGC	1 cut(s)	1324
BisI	GCNGC	8 cut(s)	75, 138, 1135, 1346, 1790, 1866, 2014, 2307
BlsI	GCNGC	8 cut(s)	76, 139, 1136, 1347, 1791, 1867, 2015, 2308
Bme1390I	CCNGG	4 cut(s)	95, 758, 1698, 2258
Bme18I	GGWCC	2 cut(s)	225, 417
BmgT120I	GGNCC	2 cut(s)	225, 417
BmiI	GGNNCC	4 cut(s)	100, 226, 418, 1033
BmrFI	CCNGG	4 cut(s)	95, 758, 1698, 2258
BmrI	ACTGGG	2 cut(s)	747, 1911
BmuI	ACTGGG	2 cut(s)	747, 1911
BpiI	GAAGAC	2 cut(s)	240, 2133
BplI	GAGNNNNNCTC	2 cut(s)	1261, 1293
Bpu14I	TTCGAA	1 cut(s)	1391
BpuEI	CTTGAG	3 cut(s)	1440, 2042, 2131
BpuMI	CCSGG	1 cut(s)	2258
BsaHI	GRCGYC	1 cut(s)	99
BsaI	GGTCTC	2 cut(s)	2018, 2247
BsaJI	CCNNGG	8 cut(s)	94, 228, 930, 1057, 1245, 1884, 2163, 2358
BsaXI	ACNNNNNCTCC	2 cut(s)	839, 869
Bsc4I	CCNNNNNNNGG	5 cut(s)	414, 757, 1042, 1530, 1806
Bse1I	ACTGG	7 cut(s)	265, 287, 742, 1176, 1827, 1906, 1998
Bse3DI	GCAATG	1 cut(s)	751
BseBI	CCWGG	3 cut(s)	95, 758, 1698
BseDI	CCNNGG	8 cut(s)	94, 228, 930, 1057, 1245, 1884, 2163, 2358
BseGI	GGATG	6 cut(s)	628, 632, 1308, 1479, 1492, 2015
BseLI	CCNNNNNNNGG	5 cut(s)	414, 757, 1042, 1530, 1806
BseMI	GCAATG	1 cut(s)	751
BseMII	CTCAG	2 cut(s)	1860, 2263
BseNI	ACTGG	7 cut(s)	265, 287, 742, 1176, 1827, 1906, 1998
BseXI	GCAGC	6 cut(s)	1146, 1357, 1776, 1852, 2025, 2293
BsgI	GTGCAG	2 cut(s)	654, 1153
Bsh1236I	CGCG	2 cut(s)	72, 239
BshFI	GGCC	4 cut(s)	407, 431, 982, 1167
BshNI	GGYRCC	1 cut(s)	98
BsiHKAI	GWGCWC	2 cut(s)	1601, 1710
BsiSI	CCGG	2 cut(s)	677, 2258
BslFI	GGGAC	1 cut(s)	912
BslI	CCNNNNNNNGG	5 cut(s)	414, 757, 1042, 1530, 1806
BsmAI	GTCTC	3 cut(s)	959, 2018, 2247
BsmFI	GGGAC	1 cut(s)	912
BsmI	GAATGC	2 cut(s)	898, 1581
BsnI	GGCC	4 cut(s)	407, 431, 982, 1167
Bso31I	GGTCTC	2 cut(s)	2018, 2247
Bsp119I	TTCGAA	1 cut(s)	1391
Bsp1286I	GDGCHC	4 cut(s)	84, 1036, 1601, 1710
Bsp1407I	TGTACA	1 cut(s)	1219
Bsp143I	GATC	7 cut(s)	693, 1261, 1544, 1693, 1726, 1965, 2235
Bsp19I	CCATGG	2 cut(s)	228, 1057
BspACI	CCGC	7 cut(s)	75, 107, 138, 374, 828, 845, 1348
BspANI	GGCC	4 cut(s)	407, 431, 982, 1167
BspCNI	CTCAG	2 cut(s)	1861, 2262
BspFNI	CGCG	2 cut(s)	72, 239
BspHI	TCATGA	1 cut(s)	205
BspLI	GGNNCC	4 cut(s)	100, 226, 418, 1033
BspMAI	CTGCAG	1 cut(s)	2197
BspMI	ACCTGC	1 cut(s)	1324
BspPI	GGATC	3 cut(s)	1269, 1688, 1973
BspQI	GCTCTTC	2 cut(s)	190, 207
BspT104I	TTCGAA	1 cut(s)	1391
BspT107I	GGYRCC	1 cut(s)	98
BspTNI	GGTCTC	2 cut(s)	2018, 2247
BsrBI	CCGCTC	1 cut(s)	374
BsrDI	GCAATG	1 cut(s)	751
BsrGI	TGTACA	1 cut(s)	1219
BsrI	ACTGG	7 cut(s)	265, 287, 742, 1176, 1827, 1906, 1998
BssECI	CCNNGG	8 cut(s)	94, 228, 930, 1057, 1245, 1884, 2163, 2358
BssMI	GATC	7 cut(s)	693, 1261, 1544, 1693, 1726, 1965, 2235
BssNAI	GTATAC	1 cut(s)	487
BssNI	GRCGYC	1 cut(s)	99
BssT1I	CCWWGG	6 cut(s)	228, 1057, 1245, 1884, 2163, 2358
Bst1107I	GTATAC	1 cut(s)	487
Bst2UI	CCWGG	3 cut(s)	95, 758, 1698
Bst4CI	ACNGT	4 cut(s)	1688, 1715, 2144, 2207
Bst6I	CTCTTC	2 cut(s)	190, 207
BstACI	GRCGYC	1 cut(s)	99
BstAPI	GCANNNNNTGC	1 cut(s)	1862
BstAUI	TGTACA	1 cut(s)	1219
BstBI	TTCGAA	1 cut(s)	1391
BstC8I	GCNNGC	1 cut(s)	1132
BstDEI	CTNAG	3 cut(s)	1869, 2249, 2310
BstDSI	CCRYGG	3 cut(s)	228, 930, 1057
BstENI	CCTNNNNNAGG	1 cut(s)	1040
BstF5I	GGATG	6 cut(s)	628, 632, 1308, 1479, 1492, 2015
BstFNI	CGCG	2 cut(s)	72, 239
BstH2I	RGCGCY	1 cut(s)	102
BstHHI	GCGC	4 cut(s)	74, 101, 241, 916
BstKTI	GATC	7 cut(s)	696, 1264, 1547, 1696, 1729, 1968, 2238
BstMAI	GTCTC	3 cut(s)	959, 2018, 2247
BstMBI	GATC	7 cut(s)	693, 1261, 1544, 1693, 1726, 1965, 2235
BstMWI	GCNNNNNNNGC	8 cut(s)	515, 696, 920, 1351, 1635, 1789, 1862, 2295
BstNI	CCWGG	3 cut(s)	95, 758, 1698
BstNSI	RCATGY	2 cut(s)	817, 1426
BstSCI	CCNGG	4 cut(s)	93, 756, 1696, 2256
BstSFI	CTRYAG	1 cut(s)	2193
BstUI	CGCG	2 cut(s)	72, 239
BstV1I	GCAGC	6 cut(s)	1146, 1357, 1776, 1852, 2025, 2293
BstV2I	GAAGAC	2 cut(s)	240, 2133
BstX2I	RGATCY	1 cut(s)	1261
BstYI	RGATCY	1 cut(s)	1261
BstZ17I	GTATAC	1 cut(s)	487
BsuRI	GGCC	4 cut(s)	407, 431, 982, 1167
BtgI	CCRYGG	3 cut(s)	228, 930, 1057
BtgZI	GCGATG	1 cut(s)	911
BtsCI	GGATG	6 cut(s)	628, 632, 1308, 1479, 1492, 2015
BtsI	GCAGTG	1 cut(s)	642
BtsIMutI	CAGTG	3 cut(s)	164, 642, 2212
BveI	ACCTGC	1 cut(s)	1324
Cac8I	GCNNGC	1 cut(s)	1132
CaiI	CAGNNNCTG	1 cut(s)	1806
CciI	TCATGA	1 cut(s)	205
CfoI	GCGC	4 cut(s)	74, 101, 241, 916
Cfr13I	GGNCC	2 cut(s)	225, 417
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	6 cut(s)	277, 817, 1220, 1449, 1684, 1740
CspCI	CAANNNNNGTGG	4 cut(s)	151, 186, 391, 426
CviQI	GTAC	6 cut(s)	277, 817, 1220, 1449, 1684, 1740
DdeI	CTNAG	3 cut(s)	1869, 2249, 2310
DinI	GGCGCC	1 cut(s)	100
DpnI	GATC	7 cut(s)	695, 1263, 1546, 1695, 1728, 1967, 2237
DpnII	GATC	7 cut(s)	693, 1261, 1544, 1693, 1726, 1965, 2235
EaeI	YGGCCR	2 cut(s)	429, 1165
Eam1104I	CTCTTC	2 cut(s)	190, 207
EarI	CTCTTC	2 cut(s)	190, 207
Eco130I	CCWWGG	6 cut(s)	228, 1057, 1245, 1884, 2163, 2358
Eco147I	AGGCCT	2 cut(s)	407, 982
Eco24I	GRGCYC	2 cut(s)	84, 1036
Eco31I	GGTCTC	2 cut(s)	2018, 2247
Eco32I	GATATC	1 cut(s)	1191
Eco47I	GGWCC	2 cut(s)	225, 417
Eco57I	CTGAAG	3 cut(s)	1347, 1956, 2359
EcoNI	CCTNNNNNAGG	1 cut(s)	1040
EcoO109I	RGGNCCY	1 cut(s)	417
EcoRI	GAATTC	3 cut(s)	589, 1408, 2188
EcoRII	CCWGG	3 cut(s)	93, 756, 1696
EcoRV	GATATC	1 cut(s)	1191
EcoT14I	CCWWGG	6 cut(s)	228, 1057, 1245, 1884, 2163, 2358
EcoT22I	ATGCAT	1 cut(s)	1669
EcoT38I	GRGCYC	2 cut(s)	84, 1036
EgeI	GGCGCC	1 cut(s)	100
EheI	GGCGCC	1 cut(s)	100
ErhI	CCWWGG	6 cut(s)	228, 1057, 1245, 1884, 2163, 2358
FaqI	GGGAC	1 cut(s)	912
FauI	CCCGC	1 cut(s)	114
FauNDI	CATATG	2 cut(s)	491, 1216
FblI	GTMKAC	2 cut(s)	486, 832
Fnu4HI	GCNGC	8 cut(s)	75, 138, 1135, 1346, 1790, 1866, 2014, 2307
FokI	GGATG	6 cut(s)	635, 639, 1295, 1486, 1499, 2022
FriOI	GRGCYC	2 cut(s)	84, 1036
Fsp4HI	GCNGC	8 cut(s)	75, 138, 1135, 1346, 1790, 1866, 2014, 2307
FspBI	CTAG	2 cut(s)	836, 1445
GlaI	GCGC	4 cut(s)	73, 100, 240, 915
GluI	GCNGC	8 cut(s)	75, 138, 1135, 1346, 1790, 1866, 2014, 2307
HaeII	RGCGCY	1 cut(s)	102
HaeIII	GGCC	4 cut(s)	407, 431, 982, 1167
HapII	CCGG	2 cut(s)	677, 2258
HgaI	GACGC	1 cut(s)	245
HhaI	GCGC	4 cut(s)	74, 101, 241, 916
Hin1I	GRCGYC	1 cut(s)	99
Hin6I	GCGC	4 cut(s)	72, 99, 239, 914
HinP1I	GCGC	4 cut(s)	72, 99, 239, 914
HincII	GTYRAC	2 cut(s)	159, 1617
HindII	GTYRAC	2 cut(s)	159, 1617
HinfI	GANTC	5 cut(s)	4, 684, 935, 1803, 2354
HpaI	GTTAAC	1 cut(s)	1617
HpaII	CCGG	2 cut(s)	677, 2258
HphI	GGTGA	4 cut(s)	772, 2140, 2360, 2411
Hpy166II	GTNNAC	8 cut(s)	159, 448, 487, 833, 1222, 1274, 1617, 2140
Hpy8I	GTNNAC	8 cut(s)	159, 448, 487, 833, 1222, 1274, 1617, 2140
HpyAV	CCTTC	8 cut(s)	356, 435, 541, 736, 1023, 1408, 1938, 2308
HpyCH4III	ACNGT	4 cut(s)	1688, 1715, 2144, 2207
HpyCH4IV	ACGT	4 cut(s)	483, 1156, 2070, 2103
HpyF10VI	GCNNNNNNNGC	8 cut(s)	515, 696, 920, 1351, 1635, 1789, 1862, 2295
HpyF3I	CTNAG	3 cut(s)	1869, 2249, 2310
HpySE526I	ACGT	4 cut(s)	483, 1156, 2070, 2103
Hsp92I	GRCGYC	1 cut(s)	99
HspAI	GCGC	4 cut(s)	72, 99, 239, 914
KasI	GGCGCC	1 cut(s)	98
KspAI	GTTAAC	1 cut(s)	1617
Kzo9I	GATC	7 cut(s)	693, 1261, 1544, 1693, 1726, 1965, 2235
LguI	GCTCTTC	2 cut(s)	190, 207
LmnI	GCTCC	4 cut(s)	371, 735, 1031, 1381
Lsp1109I	GCAGC	6 cut(s)	1146, 1357, 1776, 1852, 2025, 2293
MaeI	CTAG	2 cut(s)	836, 1445
MaeII	ACGT	4 cut(s)	483, 1156, 2070, 2103
MaeIII	GTNAC	2 cut(s)	494, 2078
MalI	GATC	7 cut(s)	695, 1263, 1546, 1695, 1728, 1967, 2237
MbiI	CCGCTC	1 cut(s)	374
MboI	GATC	7 cut(s)	693, 1261, 1544, 1693, 1726, 1965, 2235
MflI	RGATCY	1 cut(s)	1261
MhlI	GDGCHC	4 cut(s)	84, 1036, 1601, 1710
MlsI	TGGCCA	1 cut(s)	1167
MluNI	TGGCCA	1 cut(s)	1167
Mly113I	GGCGCC	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	944
MmeI	TCCRAC	3 cut(s)	32, 349, 1634
Mox20I	TGGCCA	1 cut(s)	1167
Mph1103I	ATGCAT	1 cut(s)	1669
MroXI	GAANNNNTTC	3 cut(s)	458, 1254, 1397
MscI	TGGCCA	1 cut(s)	1167
MseI	TTAA	3 cut(s)	570, 705, 1616
MslI	CAYNNNNRTG	3 cut(s)	210, 909, 2205
Msp20I	TGGCCA	1 cut(s)	1167
MspA1I	CMGCKG	1 cut(s)	1348
MspI	CCGG	2 cut(s)	677, 2258
MspR9I	CCNGG	4 cut(s)	95, 758, 1698, 2258
Mva1269I	GAATGC	2 cut(s)	898, 1581
MvaI	CCWGG	3 cut(s)	95, 758, 1698
MvnI	CGCG	2 cut(s)	72, 239
MwoI	GCNNNNNNNGC	8 cut(s)	515, 696, 920, 1351, 1635, 1789, 1862, 2295
NarI	GGCGCC	1 cut(s)	99
NciI	CCSGG	1 cut(s)	2258
NcoI	CCATGG	2 cut(s)	228, 1057
NdeI	CATATG	2 cut(s)	491, 1216
NdeII	GATC	7 cut(s)	693, 1261, 1544, 1693, 1726, 1965, 2235
NlaIV	GGNNCC	4 cut(s)	100, 226, 418, 1033
NmeAIII	GCCGAG	1 cut(s)	103
NmuCI	GTSAC	1 cut(s)	2078
NsiI	ATGCAT	1 cut(s)	1669
NspI	RCATGY	2 cut(s)	817, 1426
NspV	TTCGAA	1 cut(s)	1391
PagI	TCATGA	1 cut(s)	205
PceI	AGGCCT	2 cut(s)	407, 982
PciI	ACATGT	2 cut(s)	813, 1422
PciSI	GCTCTTC	2 cut(s)	190, 207
PctI	GAATGC	2 cut(s)	898, 1581
PdmI	GAANNNNTTC	3 cut(s)	458, 1254, 1397
PfeI	GAWTC	3 cut(s)	684, 1803, 2354
PflMI	CCANNNNNTGG	1 cut(s)	1806
PfoI	TCCNGGA	1 cut(s)	1696
PkrI	GCNGC	8 cut(s)	76, 139, 1136, 1347, 1791, 1867, 2015, 2308
PleI	GAGTC	1 cut(s)	943
PluTI	GGCGCC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	943
PpuMI	RGGWCCY	1 cut(s)	417
PscI	ACATGT	2 cut(s)	813, 1422
Psp5II	RGGWCCY	1 cut(s)	417
Psp6I	CCWGG	3 cut(s)	93, 756, 1696
PspGI	CCWGG	3 cut(s)	93, 756, 1696
PspN4I	GGNNCC	4 cut(s)	100, 226, 418, 1033
PspPI	GGNCC	2 cut(s)	225, 417
PspPPI	RGGWCCY	1 cut(s)	417
PstI	CTGCAG	1 cut(s)	2197
PstNI	CAGNNNCTG	1 cut(s)	1806
PsuI	RGATCY	1 cut(s)	1261
RsaI	GTAC	6 cut(s)	278, 818, 1221, 1450, 1685, 1741
RsaNI	GTAC	6 cut(s)	277, 817, 1220, 1449, 1684, 1740
RseI	CAYNNNNRTG	3 cut(s)	210, 909, 2205
SapI	GCTCTTC	2 cut(s)	190, 207
SaqAI	TTAA	3 cut(s)	570, 705, 1616
SatI	GCNGC	8 cut(s)	75, 138, 1135, 1346, 1790, 1866, 2014, 2307
Sau3AI	GATC	7 cut(s)	693, 1261, 1544, 1693, 1726, 1965, 2235
Sau96I	GGNCC	2 cut(s)	225, 417
SchI	GAGTC	1 cut(s)	944
ScrFI	CCNGG	4 cut(s)	95, 758, 1698, 2258
SduI	GDGCHC	4 cut(s)	84, 1036, 1601, 1710
SfcI	CTRYAG	1 cut(s)	2193
SfoI	GGCGCC	1 cut(s)	100
SfuI	TTCGAA	1 cut(s)	1391
SinI	GGWCC	2 cut(s)	225, 417
SmiMI	CAYNNNNRTG	3 cut(s)	210, 909, 2205
SmlI	CTYRAG	3 cut(s)	1455, 2021, 2110
SmoI	CTYRAG	3 cut(s)	1455, 2021, 2110
SseBI	AGGCCT	2 cut(s)	407, 982
SsiI	CCGC	7 cut(s)	75, 107, 138, 374, 828, 845, 1348
SspDI	GGCGCC	1 cut(s)	98
SspMI	CTAG	2 cut(s)	836, 1445
StuI	AGGCCT	2 cut(s)	407, 982
StyD4I	CCNGG	4 cut(s)	93, 756, 1696, 2256
StyI	CCWWGG	6 cut(s)	228, 1057, 1245, 1884, 2163, 2358
TaaI	ACNGT	4 cut(s)	1688, 1715, 2144, 2207
TaiI	ACGT	4 cut(s)	486, 1159, 2073, 2106
TaqI	TCGA	5 cut(s)	64, 593, 720, 1391, 1644
TatI	WGTACW	1 cut(s)	1219
TauI	GCSGC	2 cut(s)	77, 140
TfiI	GAWTC	3 cut(s)	684, 1803, 2354
Tru1I	TTAA	3 cut(s)	570, 705, 1616
Tru9I	TTAA	3 cut(s)	570, 705, 1616
TscAI	CASTG	3 cut(s)	171, 642, 2212
TseFI	GTSAC	1 cut(s)	2078
TseI	GCWGC	6 cut(s)	1134, 1345, 1789, 1865, 2013, 2306
Tsp45I	GTSAC	1 cut(s)	2078
TspGWI	ACGGA	4 cut(s)	323, 921, 1246, 1978
TspRI	CASTG	3 cut(s)	171, 642, 2212
Van91I	CCANNNNNTGG	1 cut(s)	1806
VpaK11BI	GGWCC	2 cut(s)	225, 417
XagI	CCTNNNNNAGG	1 cut(s)	1040
XapI	RAATTY	9 cut(s)	356, 589, 1003, 1145, 1183, 1356, 1408, 1970, 2188
XceI	RCATGY	2 cut(s)	817, 1426
XcmI	CCANNNNNNNNNTGG	2 cut(s)	218, 2378
XmiI	GTMKAC	2 cut(s)	486, 832
XmnI	GAANNNNTTC	3 cut(s)	458, 1254, 1397
XspI	CTAG	2 cut(s)	836, 1445
Zsp2I	ATGCAT	1 cut(s)	1669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.