Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0012203

Physical Location & Seq

Genomic Coordinates Reverse (-)

14577920 .. 14578811

Gene Structure 892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g11050.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGAGGATGCACTCCGGTTGTTAGAGAAAATGTCCCATTCAGATACGTATTACTGGAATGTTATGATTAGAGGTCTCGCTGATAATGGGTTGTTCCGGGAGGCGATTGATTTTTATCATAGTATGCAAAGGGAAGGTATTCGAGCTGATAATTATACCTACCCATTGGTGATCAAGGCTTGTGGTGGAGTGGAATATGCAGAGAGGTTGTTTGATGAGATTTGCACCAAGAATGTTGTGGTTTGGAATGCGATGATACATGGGTATACTCAAAATGCTCGTCCGCTTGAGTCACTTTCTTGCTTGAAAAAAATGCAAGAGGCAGATAAGTTGATTCCTGATTCTATCACAATGATCAATTATCTTCCCTCTTGCACACAACTAGGAGCCCTATTGGAAGGTAAATCAATCCATGGCTATGCCATTAGACGAGGTTTTCTCCCTCATATTGTATTGGAAACTGCGGCAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

158

Amino Acids

17.84

Weight (kDa)

5.94

Isoelectric Point (pI)

43.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35130
fragaria_vesca	FvH4_2g15700
malus_domestica	MD05G1126100.v1.1 MD10G1128900.v1.1
prunus_persica	Prupe.8G169500_v2.0.a1
pyrus_communis	pycom05g12020 pycom05g12050 pycom05g12170 pycom10g11050
rosa_chinensis	RchiOBHm_Chr6g0279001
rosa_laevigata	RLG00000013176
rosa_multiflora	Rmu_sc0002080.1_g000022
rosa_roxburghii	Rroxscaffold_7G00189240
rosa_rugosa	Rorug06G0120900
rosa_samantha	Rh6AG229800 Rh6BG234800 Rh6CG236900 Rh6DG228600
rosa_wichuraiana	Rw6G020130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	266
AciI	CCGC	2 cut(s)	284, 464
AgsI	TTSAA	1 cut(s)	307
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
Alw26I	GTCTC	1 cut(s)	80
ArsI	GACNNNNNNTTYG	2 cut(s)	265, 297
Asp700I	GAANNNNTTC	1 cut(s)	138
AsuC2I	CCSGG	1 cut(s)	98
AsuHPI	GGTGA	1 cut(s)	181
BaeI	ACNNNNGTAYC	2 cut(s)	248, 281
BanII	GRGCYC	1 cut(s)	391
BclI	TGATCA	2 cut(s)	171, 354
BcnI	CCSGG	1 cut(s)	98
BcoDI	GTCTC	1 cut(s)	80
BfaI	CTAG	1 cut(s)	383
BisI	GCNGC	1 cut(s)	465
BlsI	GCNGC	1 cut(s)	466
Bme1390I	CCNGG	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	388
BmrFI	CCNGG	1 cut(s)	98
BplI	GAGNNNNNCTC	2 cut(s)	423, 455
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	98
BsaAI	YACGTR	1 cut(s)	48
BsaBI	GATNNNNATC	1 cut(s)	114
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	412
BsaWI	WCCGGW	1 cut(s)	15
Bse1I	ACTGG	1 cut(s)	59
Bse8I	GATNNNNATC	1 cut(s)	114
BseDI	CCNNGG	1 cut(s)	412
BseGI	GGATG	1 cut(s)	13
BseJI	GATNNNNATC	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	59
BsiSI	CCGG	2 cut(s)	16, 97
BslFI	GGGAC	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	80
BsmFI	GGGAC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	253
Bso31I	GGTCTC	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp143I	GATC	2 cut(s)	171, 354
Bsp19I	CCATGG	1 cut(s)	412
BspACI	CCGC	2 cut(s)	284, 464
BspLI	GGNNCC	1 cut(s)	388
BspTNI	GGTCTC	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	412
BssMI	GATC	2 cut(s)	171, 354
BssNAI	GTATAC	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	412
Bst1107I	GTATAC	1 cut(s)	267
BstBAI	YACGTR	1 cut(s)	48
BstDSI	CCRYGG	1 cut(s)	412
BstF5I	GGATG	1 cut(s)	13
BstKTI	GATC	2 cut(s)	174, 357
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	2 cut(s)	171, 354
BstSCI	CCNGG	1 cut(s)	96
BstSNI	TACGTA	1 cut(s)	48
BstZ17I	GTATAC	1 cut(s)	267
BtgI	CCRYGG	1 cut(s)	412
BtgZI	GCGATG	1 cut(s)	266
BtsCI	GGATG	1 cut(s)	13
CspCI	CAANNNNNGTGG	2 cut(s)	163, 198
CviAII	CATG	2 cut(s)	260, 413
CviJI	RGCY	4 cut(s)	146, 179, 389, 417
CviKI_1	RGCY	4 cut(s)	146, 179, 389, 417
DpnI	GATC	2 cut(s)	173, 356
DpnII	GATC	2 cut(s)	171, 354
Eco105I	TACGTA	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	412
Eco24I	GRGCYC	1 cut(s)	391
Eco31I	GGTCTC	1 cut(s)	80
EcoT14I	CCWWGG	1 cut(s)	412
EcoT38I	GRGCYC	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	412
FaeI	CATG	2 cut(s)	263, 416
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	2 cut(s)	259, 412
FbaI	TGATCA	2 cut(s)	171, 354
FblI	GTMKAC	1 cut(s)	266
Fnu4HI	GCNGC	1 cut(s)	465
FokI	GGATG	1 cut(s)	20
FriOI	GRGCYC	1 cut(s)	391
Fsp4HI	GCNGC	1 cut(s)	465
FspBI	CTAG	1 cut(s)	383
GluI	GCNGC	1 cut(s)	465
HapII	CCGG	2 cut(s)	16, 97
Hin1II	CATG	2 cut(s)	263, 416
HinfI	GANTC	3 cut(s)	290, 334, 341
HpaII	CCGG	2 cut(s)	16, 97
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	267
Hpy188I	TCNGA	1 cut(s)	43
Hpy188III	TCNNGA	1 cut(s)	338
Hpy8I	GTNNAC	1 cut(s)	267
HpyAV	CCTTC	2 cut(s)	128, 392
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	6 cut(s)	11, 127, 200, 225, 316, 375
HpySE526I	ACGT	1 cut(s)	47
Hsp92II	CATG	2 cut(s)	263, 416
Ksp22I	TGATCA	2 cut(s)	171, 354
Kzo9I	GATC	2 cut(s)	171, 354
LmnI	GCTCC	1 cut(s)	386
LpnPI	CCDG	5 cut(s)	29, 40, 110, 351, 453
MaeI	CTAG	1 cut(s)	383
MaeII	ACGT	1 cut(s)	47
MaeIII	GTNAC	1 cut(s)	291
MalI	GATC	2 cut(s)	173, 356
MboI	GATC	2 cut(s)	171, 354
MboII	GAAGA	1 cut(s)	356
MhlI	GDGCHC	1 cut(s)	391
MluCI	AATT	2 cut(s)	151, 358
MlyI	GAGTC	1 cut(s)	299
MnlI	CCTC	7 cut(s)	65, 94, 198, 313, 379, 425, 453
MroXI	GAANNNNTTC	1 cut(s)	138
MslI	CAYNNNNRTG	1 cut(s)	417
MspI	CCGG	2 cut(s)	16, 97
MspR9I	CCNGG	1 cut(s)	98
Mva1269I	GAATGC	1 cut(s)	253
NciI	CCSGG	1 cut(s)	98
NcoI	CCATGG	1 cut(s)	412
NdeII	GATC	2 cut(s)	171, 354
NlaIII	CATG	2 cut(s)	263, 416
NlaIV	GGNNCC	1 cut(s)	388
NmuCI	GTSAC	1 cut(s)	291
PctI	GAATGC	1 cut(s)	253
PdmI	GAANNNNTTC	1 cut(s)	138
PfeI	GAWTC	2 cut(s)	334, 341
PfoI	TCCNGGA	1 cut(s)	96
PkrI	GCNGC	1 cut(s)	466
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
Ppu21I	YACGTR	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	388
RseI	CAYNNNNRTG	1 cut(s)	417
SatI	GCNGC	1 cut(s)	465
Sau3AI	GATC	2 cut(s)	171, 354
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	1 cut(s)	98
SduI	GDGCHC	1 cut(s)	391
SetI	ASST	8 cut(s)	50, 76, 139, 148, 161, 209, 403, 436
SmiMI	CAYNNNNRTG	1 cut(s)	417
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
SnaBI	TACGTA	1 cut(s)	48
Sse9I	AATT	2 cut(s)	151, 358
SsiI	CCGC	2 cut(s)	284, 464
SspMI	CTAG	1 cut(s)	383
StyD4I	CCNGG	1 cut(s)	96
StyI	CCWWGG	1 cut(s)	412
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	1 cut(s)	142
TasI	AATT	2 cut(s)	151, 358
TauI	GCSGC	1 cut(s)	467
TfiI	GAWTC	2 cut(s)	334, 341
TseFI	GTSAC	1 cut(s)	291
Tsp45I	GTSAC	1 cut(s)	291
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
XmiI	GTMKAC	1 cut(s)	266
XmnI	GAANNNNTTC	1 cut(s)	138
XspI	CTAG	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.