Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0019817

Physical Location & Seq

Genomic Coordinates Reverse (-)

16070329 .. 16071542

Gene Structure 1214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g12650.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGAGTCCACCATGGATATATTTGGTGGCAAACTGAATGCGGTTGGCATTATTTTTCTTACATTCAGAGGTCACAATGTAATTCTTGAGATACAGTTGGGTAATTTGTGCAATGTATCTATCAATATATGTAAAGGTAATGAAGTTCACCAACTTATGCTGCAGGGCACATTGCCATCAAACCCCAAATACCCAATACATAAGCGAATGTGGAGAGGAGTGACTATAGCTTGTGCACTCATAGCCATGTGTTTTCTTCCTCTGGCCATAGGTGGATTTTGGGCTTTCGGCAACAAGGTACCCACTTCCTATAGAGGAGTATTAATCTTAGTTTCACAATTCCATGGACATAAAAACACTTCAAAATTTGTACTTGGATCATTTTGCATGCTTGTGGTGATACACTGCTTAAGCACATTCCAAATCTATGGCATGGTGGCTTTTGATAATCTGGAGTCAAAGTACACTATCAGGAAGAGCAAGCCGTGTCCAAGGTGGCTTCGCGTAGCTTTACGCATTTTCTTCGGAGGAGTGGTATTCTTCATAGCAGTTGCTCTTCCATTCTTGGGAAGCTTGGCACCTCTAATCGGAGGGTTGACATTGCCTTTGGCATATGCTTACCCATGTTTCATGTGGATTTCAATCAAGAAACCAAAGCAAAAAGGAGCAGTGTGGTGGATTAACATTGGACTTGGATGCTTAGGCTTGGCTTTGAGTGTCATTTTAGTTGTTGCAGCAGCTTGGAATTTAGCTGACAAAGGTCTAAATGCCAACTTTTTTAAGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

263

Amino Acids

28.9

Weight (kDa)

9.78

Isoelectric Point (pI)

34.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019817)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g12650
rosa_chinensis	RchiOBHm_Chr6g0279641
rosa_multiflora	Rmu_sc0004010.1_g000006 Rmu_sc0004649.1_g000004
rosa_rugosa	Rorug06G0126600 Rorug06G0126700
rosa_samantha	Rh6BG239300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	298
AccB1I	GGYRCC	2 cut(s)	298, 577
AccII	CGCG	1 cut(s)	504
AciI	CCGC	1 cut(s)	41
AclWI	GGATC	1 cut(s)	385
AcoI	YGGCCR	1 cut(s)	264
AcsI	RAATTY	2 cut(s)	365, 745
AfaI	GTAC	3 cut(s)	300, 372, 464
AfiI	CCNNNNNNNGG	2 cut(s)	566, 587
AflII	CTTAAG	1 cut(s)	409
AgsI	TTSAA	2 cut(s)	363, 642
AluBI	AGCT	5 cut(s)	230, 509, 573, 740, 752
AluI	AGCT	5 cut(s)	230, 509, 573, 740, 752
Alw21I	GWGCWC	1 cut(s)	238
Alw44I	GTGCAC	1 cut(s)	234
AlwI	GGATC	1 cut(s)	385
AoxI	GGCC	1 cut(s)	264
ApaLI	GTGCAC	1 cut(s)	234
ApeKI	GCWGC	3 cut(s)	160, 734, 737
ApoI	RAATTY	2 cut(s)	365, 745
ArsI	GACNNNNNNTTYG	2 cut(s)	589, 621
AseI	ATTAAT	1 cut(s)	323
Asp718I	GGTACC	1 cut(s)	298
AsuHPI	GGTGA	2 cut(s)	140, 409
BaeGI	GKGCMC	2 cut(s)	170, 238
BalI	TGGCCA	1 cut(s)	266
BanI	GGYRCC	2 cut(s)	298, 577
Bbv12I	GWGCWC	1 cut(s)	238
BbvI	GCAGC	3 cut(s)	147, 746, 749
BccI	CCATC	1 cut(s)	184
BceAI	ACGGC	1 cut(s)	469
BcgI	CGANNNNNNTGC	2 cut(s)	505, 539
BfmI	CTRYAG	3 cut(s)	161, 225, 310
BfrI	CTTAAG	1 cut(s)	409
BisI	GCNGC	3 cut(s)	161, 735, 738
BlsI	GCNGC	3 cut(s)	162, 736, 739
BmiI	GGNNCC	2 cut(s)	300, 579
BmsI	GCATC	1 cut(s)	686
BoxI	GACNNNNGTC	1 cut(s)	759
BpmI	CTGGAG	1 cut(s)	473
Bpu10I	CCTNAGC	1 cut(s)	700
BpuEI	CTTGAG	1 cut(s)	107
BsaBI	GATNNNNATC	1 cut(s)	641
BsaJI	CCNNGG	3 cut(s)	12, 343, 491
BsaXI	ACNNNNNCTCC	4 cut(s)	446, 476, 519, 549
Bsc4I	CCNNNNNNNGG	2 cut(s)	566, 587
Bse3DI	GCAATG	3 cut(s)	118, 170, 599
Bse8I	GATNNNNATC	1 cut(s)	641
BseDI	CCNNGG	3 cut(s)	12, 343, 491
BseGI	GGATG	1 cut(s)	701
BseJI	GATNNNNATC	1 cut(s)	641
BseLI	CCNNNNNNNGG	2 cut(s)	566, 587
BseMI	GCAATG	3 cut(s)	118, 170, 599
BseRI	GAGGAG	3 cut(s)	231, 330, 543
BseSI	GKGCMC	2 cut(s)	170, 238
BseXI	GCAGC	3 cut(s)	147, 746, 749
Bsh1236I	CGCG	1 cut(s)	504
BshFI	GGCC	1 cut(s)	266
BshNI	GGYRCC	2 cut(s)	298, 577
BsiHKAI	GWGCWC	1 cut(s)	238
BslI	CCNNNNNNNGG	2 cut(s)	566, 587
BsmI	GAATGC	1 cut(s)	43
BsnI	GGCC	1 cut(s)	266
Bsp1286I	GDGCHC	2 cut(s)	170, 238
Bsp143I	GATC	1 cut(s)	377
Bsp19I	CCATGG	2 cut(s)	12, 343
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	1 cut(s)	266
BspFNI	CGCG	1 cut(s)	504
BspLI	GGNNCC	2 cut(s)	300, 579
BspMAI	CTGCAG	1 cut(s)	165
BspPI	GGATC	1 cut(s)	385
BspQI	GCTCTTC	2 cut(s)	470, 561
BspT107I	GGYRCC	2 cut(s)	298, 577
BspTI	CTTAAG	1 cut(s)	409
BsrDI	GCAATG	3 cut(s)	118, 170, 599
BssECI	CCNNGG	3 cut(s)	12, 343, 491
BssMI	GATC	1 cut(s)	377
BssT1I	CCWWGG	3 cut(s)	12, 343, 491
Bst4CI	ACNGT	1 cut(s)	96
Bst6I	CTCTTC	2 cut(s)	470, 561
BstAFI	CTTAAG	1 cut(s)	409
BstC8I	GCNNGC	2 cut(s)	389, 482
BstDEI	CTNAG	2 cut(s)	328, 700
BstDSI	CCRYGG	2 cut(s)	12, 343
BstF5I	GGATG	1 cut(s)	701
BstFNI	CGCG	1 cut(s)	504
BstKTI	GATC	1 cut(s)	380
BstMBI	GATC	1 cut(s)	377
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstNSI	RCATGY	1 cut(s)	391
BstPAI	GACNNNNGTC	1 cut(s)	759
BstSFI	CTRYAG	3 cut(s)	161, 225, 310
BstSLI	GKGCMC	2 cut(s)	170, 238
BstUI	CGCG	1 cut(s)	504
BstV1I	GCAGC	3 cut(s)	147, 746, 749
BstXI	CCANNNNNNTGG	1 cut(s)	428
BsuRI	GGCC	1 cut(s)	266
BtgI	CCRYGG	2 cut(s)	12, 343
BtsCI	GGATG	1 cut(s)	701
BtsI	GCAGTG	2 cut(s)	403, 675
BtsIMutI	CAGTG	2 cut(s)	403, 675
Cac8I	GCNNGC	2 cut(s)	389, 482
Csp6I	GTAC	3 cut(s)	299, 371, 463
CviAII	CATG	7 cut(s)	13, 247, 344, 388, 433, 624, 631
CviQI	GTAC	3 cut(s)	299, 371, 463
DdeI	CTNAG	2 cut(s)	328, 700
DpnI	GATC	1 cut(s)	379
DpnII	GATC	1 cut(s)	377
EaeI	YGGCCR	1 cut(s)	264
Eam1104I	CTCTTC	2 cut(s)	470, 561
EarI	CTCTTC	2 cut(s)	470, 561
Eco130I	CCWWGG	3 cut(s)	12, 343, 491
EcoT14I	CCWWGG	3 cut(s)	12, 343, 491
ErhI	CCWWGG	3 cut(s)	12, 343, 491
FaeI	CATG	7 cut(s)	16, 250, 347, 391, 436, 627, 634
FatI	CATG	7 cut(s)	12, 246, 343, 387, 432, 623, 630
FauNDI	CATATG	1 cut(s)	613
Fnu4HI	GCNGC	3 cut(s)	161, 735, 738
FokI	GGATG	1 cut(s)	708
Fsp4HI	GCNGC	3 cut(s)	161, 735, 738
GluI	GCNGC	3 cut(s)	161, 735, 738
GsuI	CTGGAG	1 cut(s)	473
HaeIII	GGCC	1 cut(s)	266
Hin1II	CATG	7 cut(s)	16, 250, 347, 391, 436, 627, 634
HincII	GTYRAC	1 cut(s)	597
HindII	GTYRAC	1 cut(s)	597
HindIII	AAGCTT	1 cut(s)	571
HinfI	GANTC	2 cut(s)	5, 455
HphI	GGTGA	2 cut(s)	140, 409
Hpy166II	GTNNAC	5 cut(s)	9, 148, 236, 465, 597
Hpy188I	TCNGA	3 cut(s)	68, 527, 590
Hpy188III	TCNNGA	4 cut(s)	86, 452, 472, 646
Hpy8I	GTNNAC	5 cut(s)	9, 148, 236, 465, 597
HpyCH4III	ACNGT	1 cut(s)	96
HpyCH4V	TGCA	5 cut(s)	111, 163, 236, 387, 734
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	2 cut(s)	328, 700
Hsp92II	CATG	7 cut(s)	16, 250, 347, 391, 436, 627, 634
KpnI	GGTACC	1 cut(s)	302
Kzo9I	GATC	1 cut(s)	377
LguI	GCTCTTC	2 cut(s)	470, 561
LmnI	GCTCC	1 cut(s)	665
LpnPI	CCDG	4 cut(s)	149, 248, 437, 457
Lsp1109I	GCAGC	3 cut(s)	147, 746, 749
LweI	GCATC	1 cut(s)	686
MaeIII	GTNAC	2 cut(s)	71, 220
MalI	GATC	1 cut(s)	379
MboI	GATC	1 cut(s)	377
MboII	GAAGA	5 cut(s)	248, 487, 514, 532, 548
MhlI	GDGCHC	2 cut(s)	170, 238
MlsI	TGGCCA	1 cut(s)	266
MluCI	AATT	5 cut(s)	81, 103, 338, 365, 745
MluNI	TGGCCA	1 cut(s)	266
MlyI	GAGTC	2 cut(s)	14, 464
MnlI	CCTC	7 cut(s)	62, 209, 270, 308, 521, 584, 591
Mox20I	TGGCCA	1 cut(s)	266
MscI	TGGCCA	1 cut(s)	266
MseI	TTAA	5 cut(s)	323, 410, 681, 780, 787
MslI	CAYNNNNRTG	2 cut(s)	245, 392
Msp20I	TGGCCA	1 cut(s)	266
MspCI	CTTAAG	1 cut(s)	409
Mva1269I	GAATGC	1 cut(s)	43
MvnI	CGCG	1 cut(s)	504
MwoI	GCNNNNNNNGC	1 cut(s)	242
NcoI	CCATGG	2 cut(s)	12, 343
NdeI	CATATG	1 cut(s)	613
NdeII	GATC	1 cut(s)	377
NlaIII	CATG	7 cut(s)	16, 250, 347, 391, 436, 627, 634
NlaIV	GGNNCC	2 cut(s)	300, 579
NmuCI	GTSAC	2 cut(s)	71, 220
NspI	RCATGY	1 cut(s)	391
PaeI	GCATGC	1 cut(s)	391
PciSI	GCTCTTC	2 cut(s)	470, 561
PctI	GAATGC	1 cut(s)	43
PkrI	GCNGC	3 cut(s)	162, 736, 739
PleI	GAGTC	2 cut(s)	13, 463
PpsI	GAGTC	2 cut(s)	13, 463
PshAI	GACNNNNGTC	1 cut(s)	759
PshBI	ATTAAT	1 cut(s)	323
PspN4I	GGNNCC	2 cut(s)	300, 579
PstI	CTGCAG	1 cut(s)	165
RsaI	GTAC	3 cut(s)	300, 372, 464
RsaNI	GTAC	3 cut(s)	299, 371, 463
RseI	CAYNNNNRTG	2 cut(s)	245, 392
SapI	GCTCTTC	2 cut(s)	470, 561
SaqAI	TTAA	5 cut(s)	323, 410, 681, 780, 787
SatI	GCNGC	3 cut(s)	161, 735, 738
Sau3AI	GATC	1 cut(s)	377
SchI	GAGTC	2 cut(s)	14, 464
SduI	GDGCHC	2 cut(s)	170, 238
SfaNI	GCATC	1 cut(s)	686
SfcI	CTRYAG	3 cut(s)	161, 225, 310
SmiMI	CAYNNNNRTG	2 cut(s)	245, 392
SmlI	CTYRAG	2 cut(s)	86, 409
SmoI	CTYRAG	2 cut(s)	86, 409
SphI	GCATGC	1 cut(s)	391
Sse9I	AATT	5 cut(s)	81, 103, 338, 365, 745
SsiI	CCGC	1 cut(s)	41
StyI	CCWWGG	3 cut(s)	12, 343, 491
TaaI	ACNGT	1 cut(s)	96
TasI	AATT	5 cut(s)	81, 103, 338, 365, 745
TatI	WGTACW	2 cut(s)	370, 462
Tru1I	TTAA	5 cut(s)	323, 410, 681, 780, 787
Tru9I	TTAA	5 cut(s)	323, 410, 681, 780, 787
TscAI	CASTG	2 cut(s)	410, 675
TseFI	GTSAC	2 cut(s)	71, 220
TseI	GCWGC	3 cut(s)	160, 734, 737
Tsp45I	GTSAC	2 cut(s)	71, 220
TspDTI	ATGAA	3 cut(s)	156, 532, 619
TspRI	CASTG	2 cut(s)	410, 675
Vha464I	CTTAAG	1 cut(s)	409
VneI	GTGCAC	1 cut(s)	234
VspI	ATTAAT	1 cut(s)	323
XapI	RAATTY	2 cut(s)	365, 745
XceI	RCATGY	1 cut(s)	391
XcmI	CCANNNNNNNNNTGG	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.