Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019817

Physical Location & Seq

Genomic Coordinates Reverse (-)

42736717 .. 42737655

Gene Structure 939 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25077

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGAGTCTAACATGGATAGGTTTGGTGGGATAATGAATGCAATAGGTACCATTTGTCTTGCATTCAGAGGTCACAATGTTATTCTTGAGATCCAAGTACCCTCCTCTAATGGAGGACTATTGATCGCAATTTCGCAATTCCATGCACATGACACATCAAAAGTACTGCTGGGACTAATTTACATACTGGTAATCGTTCACTGCTTAAGCACATTCCAAATCTATGCAATTGTGATGTTTGACAAGTTGGAATCAAGCTACAGTAGCAGGAAGAACAAGAGTTGTGCTAGGTGGCTTCGAACAGCTTTGCGTGTGTTCTTTGGAGGAGTGACATTTTTTGCAGCAGTGTCGACATTTCCATTCATGGAAAGTTTGGCATCTCTAACCGGAGGGGTGGCGTTACCTTTGCACTTATGGTTATCCATGTTTGATGTGGATTGCAATCAAGAAACCACACAAGGGGTCATGTGGTGTGTTAATATGGGACTTGGATGCTTAGGCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

168

Amino Acids

18.46

Weight (kDa)

6.94

Isoelectric Point (pI)

43.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	54 - 134	1.9e-06	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019817)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g12650
rosa_chinensis	RchiOBHm_Chr6g0279641
rosa_multiflora	Rmu_sc0004010.1_g000006 Rmu_sc0004649.1_g000004
rosa_rugosa	Rorug06G0126600 Rorug06G0126700
rosa_samantha	Rh6BG239300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	505
Acc65I	GGTACC	1 cut(s)	47
AccB1I	GGYRCC	1 cut(s)	47
AccI	GTMKAC	1 cut(s)	350
AclWI	GGATC	1 cut(s)	85
AfaI	GTAC	3 cut(s)	49, 99, 165
AfiI	CCNNNNNNNGG	1 cut(s)	459
AflII	CTTAAG	1 cut(s)	205
AluBI	AGCT	2 cut(s)	258, 305
AluI	AGCT	2 cut(s)	258, 305
AlwI	GGATC	1 cut(s)	85
ApeKI	GCWGC	1 cut(s)	341
Asp718I	GGTACC	1 cut(s)	47
AsuII	TTCGAA	1 cut(s)	298
BanI	GGYRCC	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	353
BcgI	CGANNNNNNTGC	2 cut(s)	330, 364
BfaI	CTAG	1 cut(s)	288
BfmI	CTRYAG	1 cut(s)	259
BfrI	CTTAAG	1 cut(s)	205
BisI	GCNGC	1 cut(s)	342
BlsI	GCNGC	1 cut(s)	343
BmcAI	AGTACT	1 cut(s)	165
BmiI	GGNNCC	1 cut(s)	49
BmsI	GCATC	2 cut(s)	386, 482
Bpu10I	CCTNAGC	1 cut(s)	496
Bpu14I	TTCGAA	1 cut(s)	298
BpuEI	CTTGAG	1 cut(s)	107
BsaBI	GATNNNNATC	1 cut(s)	441
BsaWI	WCCGGW	1 cut(s)	386
Bsc4I	CCNNNNNNNGG	1 cut(s)	459
Bse1I	ACTGG	1 cut(s)	192
Bse8I	GATNNNNATC	1 cut(s)	441
BseGI	GGATG	1 cut(s)	497
BseJI	GATNNNNATC	1 cut(s)	441
BseLI	CCNNNNNNNGG	1 cut(s)	459
BseNI	ACTGG	1 cut(s)	192
BseRI	GAGGAG	2 cut(s)	94, 339
BseXI	GCAGC	1 cut(s)	353
BseYI	CCCAGC	1 cut(s)	169
BshNI	GGYRCC	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	387
BslFI	GGGAC	2 cut(s)	186, 498
BslI	CCNNNNNNNGG	1 cut(s)	459
BsmFI	GGGAC	2 cut(s)	186, 498
BsmI	GAATGC	2 cut(s)	43, 62
Bsp119I	TTCGAA	1 cut(s)	298
Bsp143I	GATC	2 cut(s)	90, 123
BspLI	GGNNCC	1 cut(s)	49
BspPI	GGATC	1 cut(s)	85
BspT104I	TTCGAA	1 cut(s)	298
BspT107I	GGYRCC	1 cut(s)	47
BspTI	CTTAAG	1 cut(s)	205
BsrI	ACTGG	1 cut(s)	192
BssMI	GATC	2 cut(s)	90, 123
Bst4CI	ACNGT	1 cut(s)	263
BstAFI	CTTAAG	1 cut(s)	205
BstBI	TTCGAA	1 cut(s)	298
BstDEI	CTNAG	1 cut(s)	496
BstF5I	GGATG	1 cut(s)	497
BstKTI	GATC	2 cut(s)	93, 126
BstMBI	GATC	2 cut(s)	90, 123
BstMWI	GCNNNNNNNGC	1 cut(s)	264
BstSFI	CTRYAG	1 cut(s)	259
BstV1I	GCAGC	1 cut(s)	353
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	497
BtsI	GCAGTG	2 cut(s)	199, 351
BtsIMutI	CAGTG	2 cut(s)	199, 351
Csp6I	GTAC	3 cut(s)	48, 98, 164
CviAII	CATG	6 cut(s)	13, 143, 149, 364, 424, 466
CviJI	RGCY	4 cut(s)	258, 295, 305, 501
CviKI_1	RGCY	4 cut(s)	258, 295, 305, 501
CviQI	GTAC	3 cut(s)	48, 98, 164
DdeI	CTNAG	1 cut(s)	496
DpnI	GATC	2 cut(s)	92, 125
DpnII	GATC	2 cut(s)	90, 123
FaeI	CATG	6 cut(s)	16, 146, 152, 367, 427, 469
FaqI	GGGAC	2 cut(s)	186, 498
FatI	CATG	6 cut(s)	12, 142, 148, 363, 423, 465
FblI	GTMKAC	1 cut(s)	350
Fnu4HI	GCNGC	1 cut(s)	342
Fsp4HI	GCNGC	1 cut(s)	342
FspBI	CTAG	1 cut(s)	288
GluI	GCNGC	1 cut(s)	342
GsaI	CCCAGC	1 cut(s)	173
HapII	CCGG	1 cut(s)	387
Hin1II	CATG	6 cut(s)	16, 146, 152, 367, 427, 469
HincII	GTYRAC	1 cut(s)	351
HindII	GTYRAC	1 cut(s)	351
HinfI	GANTC	2 cut(s)	5, 251
HpaII	CCGG	1 cut(s)	387
Hpy166II	GTNNAC	2 cut(s)	199, 351
Hpy188I	TCNGA	1 cut(s)	68
Hpy188III	TCNNGA	2 cut(s)	86, 446
Hpy8I	GTNNAC	2 cut(s)	199, 351
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4V	TGCA	7 cut(s)	41, 62, 146, 227, 341, 409, 441
HpyF10VI	GCNNNNNNNGC	1 cut(s)	264
HpyF3I	CTNAG	1 cut(s)	496
Hsp92II	CATG	6 cut(s)	16, 146, 152, 367, 427, 469
KpnI	GGTACC	1 cut(s)	51
Kzo9I	GATC	2 cut(s)	90, 123
LpnPI	CCDG	4 cut(s)	155, 173, 253, 400
Lsp1109I	GCAGC	1 cut(s)	353
LweI	GCATC	2 cut(s)	386, 482
MaeI	CTAG	1 cut(s)	288
MaeIII	GTNAC	3 cut(s)	71, 328, 399
MalI	GATC	2 cut(s)	92, 125
MboI	GATC	2 cut(s)	90, 123
MboII	GAAGA	1 cut(s)	283
MfeI	CAATTG	1 cut(s)	228
MflI	RGATCY	1 cut(s)	90
MluCI	AATT	4 cut(s)	129, 137, 177, 228
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	6 cut(s)	62, 107, 112, 115, 317, 383
MseI	TTAA	2 cut(s)	206, 477
MslI	CAYNNNNRTG	1 cut(s)	147
MspCI	CTTAAG	1 cut(s)	205
MspI	CCGG	1 cut(s)	387
MunI	CAATTG	1 cut(s)	228
Mva1269I	GAATGC	2 cut(s)	43, 62
MwoI	GCNNNNNNNGC	1 cut(s)	264
NdeII	GATC	2 cut(s)	90, 123
NlaIII	CATG	6 cut(s)	16, 146, 152, 367, 427, 469
NlaIV	GGNNCC	1 cut(s)	49
NmuCI	GTSAC	2 cut(s)	71, 328
NspV	TTCGAA	1 cut(s)	298
PctI	GAATGC	2 cut(s)	43, 62
PfeI	GAWTC	1 cut(s)	251
PkrI	GCNGC	1 cut(s)	343
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PsiI	TTATAA	1 cut(s)	505
PspFI	CCCAGC	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	90
RsaI	GTAC	3 cut(s)	49, 99, 165
RsaNI	GTAC	3 cut(s)	48, 98, 164
RseI	CAYNNNNRTG	1 cut(s)	147
SalI	GTCGAC	1 cut(s)	349
SaqAI	TTAA	2 cut(s)	206, 477
SatI	GCNGC	1 cut(s)	342
Sau3AI	GATC	2 cut(s)	90, 123
ScaI	AGTACT	1 cut(s)	165
SchI	GAGTC	1 cut(s)	14
SetI	ASST	7 cut(s)	23, 49, 73, 260, 293, 307, 406
SfaNI	GCATC	2 cut(s)	386, 482
SfcI	CTRYAG	1 cut(s)	259
SfuI	TTCGAA	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	147
SmlI	CTYRAG	2 cut(s)	86, 205
SmoI	CTYRAG	2 cut(s)	86, 205
Sse9I	AATT	4 cut(s)	129, 137, 177, 228
SspMI	CTAG	1 cut(s)	288
TaaI	ACNGT	1 cut(s)	263
TaqI	TCGA	2 cut(s)	298, 350
TasI	AATT	4 cut(s)	129, 137, 177, 228
TatI	WGTACW	1 cut(s)	163
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	2 cut(s)	206, 477
Tru9I	TTAA	2 cut(s)	206, 477
TscAI	CASTG	2 cut(s)	206, 351
TseFI	GTSAC	2 cut(s)	71, 328
TseI	GCWGC	1 cut(s)	341
Tsp45I	GTSAC	2 cut(s)	71, 328
TspDTI	ATGAA	2 cut(s)	50, 352
TspRI	CASTG	2 cut(s)	206, 351
Vha464I	CTTAAG	1 cut(s)	205
XcmI	CCANNNNNNNNNTGG	1 cut(s)	430
XmiI	GTMKAC	1 cut(s)	350
XspI	CTAG	1 cut(s)	288
ZrmI	AGTACT	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.