Rh6BG239300

Lysine histidine transporter-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0019817
Physical Location & Seq
Reverse (-)
44520756 .. 44521178
423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG239300.1

Sequence Viewer

Length: 423 bp
ATGCAGGTACCTTTCAAAAATGCACAAGTGGTGAAAGCAGTTTCTCAATTCCATGGAAAAAACATCTCAGAATTTGTTCCGGGACTACTTTGCATACTGGTACTGATAAATTGCGTAGCTATATTCCAAATCTATGTCATGGTAGTTTTTGACAACATGGAGATGAAGTACACCAGTAAGAAGAAGGAACCGTGCCCGAGATGGCTTCGGATAGTTTTTCCCCTTTTCTTTGGAGGACTCGCATTCTTTGTGGCAGTGGCCTTGCCATTCCTGGGAGACCTATCACCCCTAATTAGAGCAGTTACATCGGTGCCTTTGACATATGTTTATCCATGTTTTATGTGGATTTCTATCCAGAAACCAAAGCCAAATGTGTCATTTGGTGTACTAATATGGGACTCGGATGCTTGGGAATGGTTTTGA

Protein Analysis

140

Amino Acids

16.04

Weight (kDa)

8.96

Isoelectric Point (pI)

31.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 27 - 122 1e-11 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019817)

Species Orthologous Gene IDs
pyrus_communis pycom05g12650
rosa_chinensis RchiOBHm_Chr6g0279641
rosa_multiflora Rmu_sc0004010.1_g000006 Rmu_sc0004649.1_g000004
rosa_rugosa Rorug06G0126600 Rorug06G0126700
rosa_samantha Rh6BG239300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 7
AccB1I GGYRCC 2 cut(s) 7, 310
AcsI RAATTY 1 cut(s) 71
AfaI GTAC 4 cut(s) 9, 102, 170, 387
AfiI CCNNNNNNNGG 1 cut(s) 272
AgsI TTSAA 1 cut(s) 16
AjnI CCWGG 1 cut(s) 270
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 270
Ama87I CYCGRG 1 cut(s) 196
AoxI GGCC 1 cut(s) 258
ApoI RAATTY 1 cut(s) 71
Asp700I GAANNNNTTC 1 cut(s) 75
Asp718I GGTACC 1 cut(s) 7
AsuC2I CCSGG 1 cut(s) 81
AsuHPI GGTGA 2 cut(s) 43, 276
AvaI CYCGRG 1 cut(s) 196
BaeGI GKGCMC 1 cut(s) 197
BanI GGYRCC 2 cut(s) 7, 310
BccI CCATC 1 cut(s) 195
BcgI CGANNNNNNTGC 2 cut(s) 288, 322
BciT130I CCWGG 1 cut(s) 272
BcnI CCSGG 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 270
Bme1390I CCNGG 2 cut(s) 81, 272
BmeT110I CYCGRG 1 cut(s) 196
BmiI GGNNCC 3 cut(s) 9, 189, 312
BmrFI CCNGG 2 cut(s) 81, 272
BmsI GCATC 1 cut(s) 394
BpuMI CCSGG 1 cut(s) 81
BsaBI GATNNNNATC 1 cut(s) 350
BsaI GGTCTC 1 cut(s) 270
BsaJI CCNNGG 2 cut(s) 52, 271
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 1 cut(s) 272
Bse1I ACTGG 2 cut(s) 102, 174
Bse8I GATNNNNATC 1 cut(s) 350
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 2 cut(s) 52, 271
BseGI GGATG 1 cut(s) 409
BseJI GATNNNNATC 1 cut(s) 350
BseLI CCNNNNNNNGG 1 cut(s) 272
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 2 cut(s) 102, 174
BseSI GKGCMC 1 cut(s) 197
BshFI GGCC 1 cut(s) 260
BshNI GGYRCC 2 cut(s) 7, 310
BsiHKCI CYCGRG 1 cut(s) 196
BsiSI CCGG 1 cut(s) 80
BslFI GGGAC 2 cut(s) 96, 410
BslI CCNNNNNNNGG 1 cut(s) 272
BsmAI GTCTC 1 cut(s) 270
BsmFI GGGAC 2 cut(s) 96, 410
BsmI GAATGC 1 cut(s) 242
BsnI GGCC 1 cut(s) 260
Bso31I GGTCTC 1 cut(s) 270
BsoBI CYCGRG 1 cut(s) 196
Bsp1286I GDGCHC 1 cut(s) 197
Bsp19I CCATGG 1 cut(s) 52
BspANI GGCC 1 cut(s) 260
BspCNI CTCAG 1 cut(s) 80
BspLI GGNNCC 3 cut(s) 9, 189, 312
BspT107I GGYRCC 2 cut(s) 7, 310
BspTNI GGTCTC 1 cut(s) 270
BsrI ACTGG 2 cut(s) 102, 174
BssECI CCNNGG 2 cut(s) 52, 271
BssT1I CCWWGG 1 cut(s) 52
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 1 cut(s) 192
BstDEI CTNAG 1 cut(s) 67
BstDSI CCRYGG 1 cut(s) 52
BstF5I GGATG 1 cut(s) 409
BstMAI GTCTC 1 cut(s) 270
BstNI CCWGG 1 cut(s) 272
BstSCI CCNGG 2 cut(s) 79, 270
BstSLI GKGCMC 1 cut(s) 197
BsuRI GGCC 1 cut(s) 260
BtgI CCRYGG 1 cut(s) 52
BtsCI GGATG 1 cut(s) 409
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 1 cut(s) 261
Csp6I GTAC 4 cut(s) 8, 101, 169, 386
CviAII CATG 4 cut(s) 53, 139, 157, 333
CviJI RGCY 4 cut(s) 119, 205, 260, 367
CviKI_1 RGCY 4 cut(s) 119, 205, 260, 367
CviQI GTAC 4 cut(s) 8, 101, 169, 386
DdeI CTNAG 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 52
Eco31I GGTCTC 1 cut(s) 270
Eco88I CYCGRG 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 270
EcoT14I CCWWGG 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 52
FaeI CATG 4 cut(s) 56, 142, 160, 336
FaqI GGGAC 2 cut(s) 96, 410
FatI CATG 4 cut(s) 52, 138, 156, 332
FauNDI CATATG 1 cut(s) 322
FokI GGATG 1 cut(s) 416
HaeIII GGCC 1 cut(s) 260
HapII CCGG 1 cut(s) 80
Hin1II CATG 4 cut(s) 56, 142, 160, 336
HinfI GANTC 2 cut(s) 237, 398
HpaII CCGG 1 cut(s) 80
HphI GGTGA 2 cut(s) 43, 276
Hpy166II GTNNAC 2 cut(s) 171, 386
Hpy188I TCNGA 3 cut(s) 70, 210, 403
Hpy188III TCNNGA 1 cut(s) 355
Hpy8I GTNNAC 2 cut(s) 171, 386
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 1 cut(s) 192
HpyCH4V TGCA 3 cut(s) 4, 23, 93
HpyF3I CTNAG 1 cut(s) 67
Hsp92II CATG 4 cut(s) 56, 142, 160, 336
KpnI GGTACC 1 cut(s) 11
LpnPI CCDG 6 cut(s) 83, 93, 187, 257, 284, 368
LweI GCATC 1 cut(s) 394
MaeIII GTNAC 1 cut(s) 301
MboII GAAGA 1 cut(s) 193
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 4 cut(s) 47, 71, 109, 291
MlyI GAGTC 2 cut(s) 231, 392
MnlI CCTC 1 cut(s) 227
MroXI GAANNNNTTC 1 cut(s) 75
MslI CAYNNNNRTG 1 cut(s) 161
MspI CCGG 1 cut(s) 80
MspR9I CCNGG 2 cut(s) 81, 272
Mva1269I GAATGC 1 cut(s) 242
MvaI CCWGG 1 cut(s) 272
NciI CCSGG 1 cut(s) 81
NcoI CCATGG 1 cut(s) 52
NdeI CATATG 1 cut(s) 322
NlaIII CATG 4 cut(s) 56, 142, 160, 336
NlaIV GGNNCC 3 cut(s) 9, 189, 312
PctI GAATGC 1 cut(s) 242
PdmI GAANNNNTTC 1 cut(s) 75
PfoI TCCNGGA 1 cut(s) 79
PleI GAGTC 2 cut(s) 231, 392
PpsI GAGTC 2 cut(s) 231, 392
Psp6I CCWGG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 3 cut(s) 9, 189, 312
RsaI GTAC 4 cut(s) 9, 102, 170, 387
RsaNI GTAC 4 cut(s) 8, 101, 169, 386
RseI CAYNNNNRTG 1 cut(s) 161
SchI GAGTC 2 cut(s) 231, 392
ScrFI CCNGG 2 cut(s) 81, 272
SduI GDGCHC 1 cut(s) 197
SetI ASST 4 cut(s) 9, 13, 121, 282
SfaNI GCATC 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 161
Sse9I AATT 4 cut(s) 47, 71, 109, 291
StyD4I CCNGG 2 cut(s) 79, 270
StyI CCWWGG 1 cut(s) 52
TaaI ACNGT 1 cut(s) 192
TasI AATT 4 cut(s) 47, 71, 109, 291
TatI WGTACW 2 cut(s) 168, 385
TscAI CASTG 1 cut(s) 261
TspDTI ATGAA 1 cut(s) 179
TspRI CASTG 1 cut(s) 261
XapI RAATTY 1 cut(s) 71
XcmI CCANNNNNNNNNTGG 1 cut(s) 339
XmnI GAANNNNTTC 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.