Rmu_sc0004649.1_g000004

Lysine histidine transporter-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004649.1
Physical Location & Seq
Forward (+)
18251 .. 18592
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004649.1_g000004.1.cds

Sequence Viewer

Length: 342 bp
atggagatgaagtacaccagtaagaagaaggaaccgtgcccgagatggcttcggatagtttttcgcctcttctttggaggactcgcattctttgtggcagtggccttgccattcctgggagacctatcacccctaattagagcagttacatcggtgcctttgacatatgtttatccatgttttatgtggatttctatcaagaaaccaaagccaaaaggtgtcatttggtgtactaatatgggactcggatgcttgggaatggttttgagtgttctttttgttgttgcagcagcttggaatttggctgacaaaggcttggttgccaacttcttcaagccgtaa

Protein Analysis

113

Amino Acids

12.68

Weight (kDa)

9.86

Isoelectric Point (pI)

23.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019817)

Species Orthologous Gene IDs
pyrus_communis pycom05g12650
rosa_chinensis RchiOBHm_Chr6g0279641
rosa_multiflora Rmu_sc0004010.1_g000006 Rmu_sc0004649.1_g000004
rosa_rugosa Rorug06G0126600 Rorug06G0126700
rosa_samantha Rh6BG239300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 154
AcsI RAATTY 1 cut(s) 298
AfaI GTAC 2 cut(s) 14, 232
AfiI CCNNNNNNNGG 1 cut(s) 116
AgsI TTSAA 1 cut(s) 334
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
Alw26I GTCTC 1 cut(s) 114
Ama87I CYCGRG 1 cut(s) 40
AoxI GGCC 1 cut(s) 102
ApeKI GCWGC 2 cut(s) 287, 290
ApoI RAATTY 1 cut(s) 298
AsuHPI GGTGA 1 cut(s) 120
AvaI CYCGRG 1 cut(s) 40
BaeGI GKGCMC 1 cut(s) 41
BanI GGYRCC 1 cut(s) 154
BbvI GCAGC 2 cut(s) 299, 302
BccI CCATC 1 cut(s) 39
BceAI ACGGC 1 cut(s) 322
BcgI CGANNNNNNTGC 2 cut(s) 132, 166
BciT130I CCWGG 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 114
BisI GCNGC 2 cut(s) 288, 291
BlsI GCNGC 2 cut(s) 289, 292
Bme1390I CCNGG 1 cut(s) 116
BmeT110I CYCGRG 1 cut(s) 40
BmiI GGNNCC 2 cut(s) 33, 156
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 1 cut(s) 239
BsaBI GATNNNNATC 1 cut(s) 194
BsaI GGTCTC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 115
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 116
Bse1I ACTGG 1 cut(s) 18
Bse8I GATNNNNATC 1 cut(s) 194
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 1 cut(s) 115
BseGI GGATG 1 cut(s) 254
BseJI GATNNNNATC 1 cut(s) 194
BseLI CCNNNNNNNGG 1 cut(s) 116
BseNI ACTGG 1 cut(s) 18
BseSI GKGCMC 1 cut(s) 41
BseXI GCAGC 2 cut(s) 299, 302
BshFI GGCC 1 cut(s) 104
BshNI GGYRCC 1 cut(s) 154
BsiHKCI CYCGRG 1 cut(s) 40
BslFI GGGAC 1 cut(s) 255
BslI CCNNNNNNNGG 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 114
BsmFI GGGAC 1 cut(s) 255
BsmI GAATGC 1 cut(s) 86
BsnI GGCC 1 cut(s) 104
Bso31I GGTCTC 1 cut(s) 114
BsoBI CYCGRG 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 41
BspANI GGCC 1 cut(s) 104
BspLI GGNNCC 2 cut(s) 33, 156
BspT107I GGYRCC 1 cut(s) 154
BspTNI GGTCTC 1 cut(s) 114
BsrI ACTGG 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 115
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 1 cut(s) 36
Bst6I CTCTTC 1 cut(s) 74
BstF5I GGATG 1 cut(s) 254
BstMAI GTCTC 1 cut(s) 114
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 114
BstSLI GKGCMC 1 cut(s) 41
BstV1I GCAGC 2 cut(s) 299, 302
BsuRI GGCC 1 cut(s) 104
BtsCI GGATG 1 cut(s) 254
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 105
Csp6I GTAC 2 cut(s) 13, 231
CviAII CATG 1 cut(s) 177
CviJI RGCY 7 cut(s) 49, 104, 211, 293, 305, 315, 337
CviKI_1 RGCY 7 cut(s) 49, 104, 211, 293, 305, 315, 337
CviQI GTAC 2 cut(s) 13, 231
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
Eco31I GGTCTC 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 40
EcoRII CCWGG 1 cut(s) 114
FaeI CATG 1 cut(s) 180
FaiI YATR 5 cut(s) 166, 168, 178, 185, 239
FaqI GGGAC 1 cut(s) 255
FatI CATG 1 cut(s) 176
FauNDI CATATG 1 cut(s) 166
Fnu4HI GCNGC 2 cut(s) 288, 291
FokI GGATG 1 cut(s) 261
Fsp4HI GCNGC 2 cut(s) 288, 291
GluI GCNGC 2 cut(s) 288, 291
HaeIII GGCC 1 cut(s) 104
Hin1II CATG 1 cut(s) 180
HinfI GANTC 2 cut(s) 81, 243
HphI GGTGA 1 cut(s) 120
Hpy166II GTNNAC 2 cut(s) 15, 231
Hpy188I TCNGA 2 cut(s) 54, 248
Hpy188III TCNNGA 1 cut(s) 199
Hpy8I GTNNAC 2 cut(s) 15, 231
HpyAV CCTTC 1 cut(s) 22
HpyCH4III ACNGT 1 cut(s) 36
HpyCH4V TGCA 1 cut(s) 287
Hsp92II CATG 1 cut(s) 180
LpnPI CCDG 3 cut(s) 31, 101, 128
Lsp1109I GCAGC 2 cut(s) 299, 302
LweI GCATC 1 cut(s) 239
MaeIII GTNAC 1 cut(s) 145
MboII GAAGA 3 cut(s) 37, 61, 322
MhlI GDGCHC 1 cut(s) 41
MluCI AATT 2 cut(s) 135, 298
MlyI GAGTC 2 cut(s) 75, 237
MnlI CCTC 2 cut(s) 71, 77
MspR9I CCNGG 1 cut(s) 116
Mva1269I GAATGC 1 cut(s) 86
MvaI CCWGG 1 cut(s) 116
NdeI CATATG 1 cut(s) 166
NlaIII CATG 1 cut(s) 180
NlaIV GGNNCC 2 cut(s) 33, 156
PctI GAATGC 1 cut(s) 86
PkrI GCNGC 2 cut(s) 289, 292
PleI GAGTC 2 cut(s) 75, 237
PpsI GAGTC 2 cut(s) 75, 237
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 2 cut(s) 33, 156
RsaI GTAC 2 cut(s) 14, 232
RsaNI GTAC 2 cut(s) 13, 231
SatI GCNGC 2 cut(s) 288, 291
SchI GAGTC 2 cut(s) 75, 237
ScrFI CCNGG 1 cut(s) 116
SduI GDGCHC 1 cut(s) 41
SetI ASST 3 cut(s) 126, 220, 295
SfaNI GCATC 1 cut(s) 239
Sse9I AATT 2 cut(s) 135, 298
StyD4I CCNGG 1 cut(s) 114
TaaI ACNGT 1 cut(s) 36
TasI AATT 2 cut(s) 135, 298
TatI WGTACW 2 cut(s) 12, 230
TscAI CASTG 1 cut(s) 105
TseI GCWGC 2 cut(s) 287, 290
TspDTI ATGAA 1 cut(s) 23
TspRI CASTG 1 cut(s) 105
XapI RAATTY 1 cut(s) 298
XcmI CCANNNNNNNNNTGG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.