Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0019817

Physical Location & Seq

Genomic Coordinates Forward (+)

17603356 .. 17607474

Gene Structure 4119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0126700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4119 bp

ATGCTTCCCTTCAAGATACTTGTTTGGAATTGTCAAGGTATTAACAACACCCCGACCCAAGATGCCCTATTGAATATGGTGCGTCTCAAACGCCCCAGTTTGATTTTTCTTTCAGAAACCCTAGCTGCTCCAGATCTGTTGACCTCAGTTCGGCGTAATTTAGGATTTGATGGCTGTTTTTGTGTTGAGTCCAAGGATGAGTGTAGAGGTTTGGCGCTTCTTTGGCGCAATGAAGTTCCGGTGAGGCTACGTAATTACTCATCGAATCATATTGATGCAGAAGTTGGAGAACTTGGCTCAGATAAGGTGTTTAGATTTACAGGGATCTATGGAGTTGCTAGAACCAGCGAGAGGATCTTCACTTGGGATCTGCTACGCGCTCTTGCTCGACAATCTCCGCTGCCTTGGTTGGTTGCTGGAGACTTTAATGAAATCTTGTGCCAAGCAGACAAATCAGGTGGCCCTCCCCGGAGTGCAACACAGATGAACCGATTTAGACAAACCCTAGTCGATTGTGCACTGCTAGATATGGGGTTCGTCGGATCTCGTTTCACTTGGTCTAACAGAACAACAAAGGAGCGTTTGGATAGAGCTTGTCGAACCCTAACTTGGAGAGAGATGTTCTCTTTTTCGAGAACTATCATCTTACCCTTGAGTAAATCTGATCACAATCCTCTTTTAATTGAGGTCAACCCTGAGCCTCCATGTAGAATGTTTTTTCCTAAGCGCTTCCGGTTTGAGGAGATGTGGTATCAGCATGAAGGGTGTTCTTCTGTTGTTGACCGTGGTTGGATGACTCCTTCTACTGGAGCACCAATGCTACAAGTTGGACAGAAGATTAAACATACTGGGAACCTTCTACTTGAATGGCATGCCGGTGTTTTTCAACAACGACATGTGGAGATGAGACTCGTACAGGATAAGCTTGCAACTATTATGAGTAAACCTTTTGAACCTTCCCAGTTTGAGGAGCAGAAAGCTTTGCAGTTCAGGCTTAATGAGCTACTCACAATCAACGAGACTTACTGGAGGCAGCGGTCTCGTATTCAATGGCTGAAAGAAGGAGATAGGAACACACCTTTCTTTCATCGTCGAGCATCTAATCGCAGGAGTCGAAATAAAGTGACAGGAATCACAAATGAGGAAGGGATGTGGACCTCTGATCCAGATCAGATTTCAGAGACACTTGTTAGATATTATGAAAACATTTTTCATACTGAGGGATCTGATAGTGCAGCCATCTCTACAGTGCTTCAAGCATTACAACCTAAAGTCACAGATTCGATGAATGAGGTACTTCTTGCTCCTTACACTGATGAAGAAATTAAGAAGGCTCTTTTCCAAATGCATCCCTCTAAGTCTCCCGGGCCAAATGGTATGTCTCCATTCTTCTTTCAGAAATTTTGGAATGTCGTTCATCATGATGTTTGTTTAGCTGTTAAGCATGTTTTGCAAACTGGGCAACTCTCTCAGGAATCGAACTTTACTCATCTCACTCTTATTCCCAAAGTGAAAGAACCAAAATTGGCCTCGGATCTACGACCAATTGCACTTTGTAACGTGGTGTACAAGATAGCTTCCAAAGTTCTTGCTAATAGACTTAAAGTTCTTCTCCCTCAGATTATATCTCCACTTCAAAGCGCCTTTGTCCCTGGTCGCTTAATCTCGGATAATACACTTATAGCTACTGAAGTAGCACATTTCATGAAGAAGTTAAGACAACAAGCAGATGGGTTCTTCTCCTTGAAGTTAGACATAAGCAAAGCTTATGACAGACTAGAATGGTCTTACCTTGAGGCAGTGTTATTGAGGTTGGGTTTTTGTAGCAGATGGGTTGATGTGGTTATGGCAACCATCAAATCTGTTAGTTATTCCATTCTAATCAATGGTGCACCTACAGGTTTCATTCTACCTACAAGGGGAATTAGGCAAGGAGATCCTTTGTCTCCATACCTTTTTATACTTTGTGCTGAAGGCTTATCAGCCTTGATTTCCTCCTCAGTTCAACATGGTACAATAAAAGGTTTGTCTATGTCTCCCTCTGCTCCTACTCTTCATCACTTGCTATTTGCTGATGATAGCTTTATTTTTGGGGAAGCTACTACCAATGAATGTACTCAGTTTAAACAGATTCTCAATGTCTATGCTAGAGCCTCAGGTCAACAAATTAATCTGCATAAGTCTAGTGTTGTGTTCAGTGGTAATGTTGACTCCCAAACTCAATCTCAATTGGCAGACATCCTTGGAGTGCAATGTGTTTCTGAGCATGGTCTCTATTTAGGTTTGCCTATTCATATAAGGCATTCTAAAGTGGCTATCTTTGCTTATCTAAAGGAGAGGTTAACTAAAAAACTCATTAGTTGGCGCTCCAAGCTATTGAGTGCTGGAGGTAAAGAAGTTTTGATCAAAGCTGTTGCTCAGACAATTCCAACCTATGCTATGAGTTGCTATATGTTGCCGAAATCCTTATGTGATGATTTACAACAATTGTGCGCTGATTTCTTCTGGGGGAGTACTGATCAGAAGAAAAAAATCCATTGGCGGTCTTGGGAGAGAATGTGTCTACCTAAAGAAGAGGGAGGTATGAGCTTTAAGCATTTACATGCCCATAATCTTTCCATGCTAGCCAAGCAAGGTTGGAGGTTGATATCCAACCCAGACTCATTAGTTGCTCAAGTCCTCAAAGCTGTTTACTACCCCCATGGTACCTTTCTCACTGCTGATATGGGTGACAGACCCTCATTTTCTTGGAGAAGTATTTTGGAAGCTCGTTCAGTTTTACAAGCTGGTTTGTATTGGAAAATTGGAACTGGCACCAAGGTTAGTATTTGGGAGGATAATTGGATTCCAAATACTCCTCCCCATTTATTGAATAAACCTGAGGATACTATCTTTGAGTTAGTTGCTGATTTGATCGATCACAATTCATGCTCTTGGAATGTGGCTGCTGTTCATCTATGTTTCCCTACAGATGTAGCTGCTAAAGTTATGTGTCTTCCTCTAAGCAGACGCTTTAACACTGATCGTTTTGCATGGAAATTAGAACCAAAAGGTTTCTTTTCAGTTAAGTCAGCTTACAGAGTGGCTCGGGAGTTGTCTATGGGGACCTATTCTGCTTCTACCTCTTCTGGAGATCCCTATGCGCCGCTATGGAAGGCTCTTTGGAATGCTAAAGTGCCCAGTAAAGTAGCTATCTTTGGTTGGAGGGCTTGCCACAACATACTTCCAACTCGAGCAGCTTTAAGTACTAAAGGTTACACTGGTGATCTGCATTGTGTTCTTTGTTCAGCTCCTTATGAGTCTATTGGTCATGTTTTATGTGACTGTGCTATTGCCAAATCTATCCTACAGTCACCTCCTTTCTCAATTCCAATCTATGTCACTCCGGCCTTTAATTTGAAAGAATGGCTGCTGGAACGGGTACTATCTCTTCCTTCTCATGTATTTGATAAACTGTTGATTATTCTCTGGAGCATTTGGAAGAACCGTAATGACAAACTGTGGAATGATAAGGAGAAATACAACTCCATGCTAATTGCTTCTGCCATGGCTTGGTATGAGGAGTACCTAAGGGCTACGCAATCTAGAGACCATTCTAGTAGTCCAAAACATGCAGTGACTAAGAAATGGATTCCCCCTCGTGGTGAGTTACTGAAAATGAATGTGGATGGCTCATTTTTATCTAATGTTCAGCATGGAGGAGTTGGGGGGGTCTTACGTAATTCTATGGGCACCTTTGTTGCAGCCTTTTGTTATAGACAGGACTTTGTCAGTTCTCCCCTACATGTTGAATTACTAGCTATACAACAAGGTCTTCGATTCATGCAGCAGCATGCTTACTTACAAGCTGAACTGGAAAGTGATTGTTTGCTTGCGGTCCATGCGATTTCCTCCTCAGTTGGTGACCTATCTCCTTTGAGTCCTCTAGTTGCTGATATCAAGGGGCTTCTAGTTCAATGTCCTACTATTTCTTTGCACCATGTTAGAAGAGATGGAAATCGTGTAGCTCATAGACTTGCTAGCATTAGTTTTGATTCGAACCTTCATCAGGATTGGTTCACACATGCTCCGGATTTCATCCTGGATGCCCTAGTGTACGATGTTATTCGTATGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

1372

Amino Acids

155.26

Weight (kDa)

9.04

Isoelectric Point (pI)

44.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	8 - 201	9.1e-12	Endonuclease/Exonuclease/phosphatase family
RVT_1	PF00078	505 - 751	8.9e-28	Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT	PF13966	1020 - 1114	5.5e-16	zinc-binding in reverse transcriptase
RVT_3	PF13456	1221 - 1341	1.4e-21	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0019817)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g12650
rosa_chinensis	RchiOBHm_Chr6g0279641
rosa_multiflora	Rmu_sc0004010.1_g000006 Rmu_sc0004649.1_g000004
rosa_rugosa	Rorug06G0126600 Rorug06G0126700
rosa_samantha	Rh6BG239300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	2705
AccB1I	GGYRCC	3 cut(s)	2705, 2813, 3731
AccB7I	CCANNNNNTGG	1 cut(s)	3552
AccI	GTMKAC	1 cut(s)	2563
AccII	CGCG	1 cut(s)	378
AccIII	TCCGGA	1 cut(s)	4069
AciI	CCGC	5 cut(s)	398, 1036, 2542, 3146, 3875
AclWI	GGATC	9 cut(s)	332, 362, 375, 550, 1157, 1231, 1542, 1931, 3128
AcsI	RAATTY	1 cut(s)	1400
AcuI	CTGAAG	2 cut(s)	1710, 1992
AfeI	AGCGCT	1 cut(s)	728
AflIII	ACRYGT	2 cut(s)	895, 3784
AjnI	CCWGG	2 cut(s)	1651, 4080
AjuI	GAANNNNNNNTTGG	2 cut(s)	592, 624
Alw21I	GWGCWC	3 cut(s)	520, 814, 1894
Alw44I	GTGCAC	2 cut(s)	516, 1890
AlwI	GGATC	9 cut(s)	332, 362, 375, 550, 1157, 1231, 1542, 1931, 3128
Ama87I	CYCGRG	3 cut(s)	1364, 3087, 3231
Aor13HI	TCCGGA	1 cut(s)	4069
Aor51HI	AGCGCT	1 cut(s)	728
AoxI	GGCC	4 cut(s)	460, 1367, 1527, 3387
ApaLI	GTGCAC	2 cut(s)	516, 1890
ApoI	RAATTY	1 cut(s)	1400
ArsI	GACNNNNNNTTYG	2 cut(s)	1364, 1396
AseI	ATTAAT	1 cut(s)	2169
Asp718I	GGTACC	1 cut(s)	2705
AspLEI	GCGC	8 cut(s)	217, 228, 380, 729, 1643, 2367, 2495, 3145
AspS9I	GGNCC	5 cut(s)	461, 1155, 1367, 3105, 3877
AsuC2I	CCSGG	3 cut(s)	469, 1365, 1366
AsuHPI	GGTGA	6 cut(s)	253, 2741, 3275, 3345, 3656, 3914
AsuII	TTCGAA	1 cut(s)	4037
AsuNHI	GCTAGC	2 cut(s)	2623, 4019
AvaI	CYCGRG	3 cut(s)	1364, 3087, 3231
AvaII	GGWCC	3 cut(s)	1155, 3105, 3877
AxyI	CCTNAGG	3 cut(s)	2155, 2880, 3569
BaeGI	GKGCMC	4 cut(s)	520, 1894, 3180, 3734
BanI	GGYRCC	3 cut(s)	2705, 2813, 3731
BarI	GAAGNNNNNNTAC	2 cut(s)	3414, 3446
BauI	CACGAG	1 cut(s)	3639
BbsI	GAAGAC	2 cut(s)	2987, 3806
Bbv12I	GWGCWC	3 cut(s)	520, 814, 1894
BccI	CCATC	7 cut(s)	164, 1247, 1724, 1824, 1862, 3662, 3986
BcgI	CGANNNNNNTGC	2 cut(s)	1022, 1056
BciT130I	CCWGG	2 cut(s)	1653, 4082
BciVI	GTATCC	1 cut(s)	2878
BclI	TGATCA	3 cut(s)	664, 2403, 2518
BcnI	CCSGG	3 cut(s)	469, 1365, 1366
BfmI	CTRYAG	4 cut(s)	1245, 1896, 2967, 3347
BfoI	RGCGCY	4 cut(s)	218, 730, 1644, 2368
BfuI	GTATCC	1 cut(s)	2878
BglII	AGATCT	1 cut(s)	133
BmcAI	AGTACT	2 cut(s)	2515, 3247
Bme1390I	CCNGG	5 cut(s)	469, 1365, 1366, 1653, 4082
Bme18I	GGWCC	3 cut(s)	1155, 3105, 3877
BmeT110I	CYCGRG	3 cut(s)	1364, 3087, 3231
BmgT120I	GGNCC	5 cut(s)	461, 1155, 1367, 3105, 3877
BmiI	GGNNCC	5 cut(s)	854, 2707, 2815, 3106, 3733
BmrFI	CCNGG	5 cut(s)	469, 1365, 1366, 1653, 4082
BmrI	ACTGGG	5 cut(s)	90, 858, 955, 1467, 3174
BmsI	GCATC	5 cut(s)	52, 265, 1106, 1357, 4075
BmtI	GCTAGC	2 cut(s)	2627, 4023
BmuI	ACTGGG	5 cut(s)	90, 858, 955, 1467, 3174
BpiI	GAAGAC	2 cut(s)	2987, 3806
BplI	GAGNNNNNCTC	2 cut(s)	608, 640
BpmI	CTGGAG	7 cut(s)	114, 438, 828, 1048, 2406, 3150, 3490
Bpu10I	CCTNAGC	2 cut(s)	696, 723
Bpu14I	TTCGAA	1 cut(s)	4037
BpuEI	CTTGAG	3 cut(s)	673, 1814, 2658
BpuMI	CCSGG	3 cut(s)	469, 1365, 1366
Bsa29I	ATCGAT	1 cut(s)	2916
BsaAI	YACGTR	2 cut(s)	251, 3719
BsaBI	GATNNNNATC	3 cut(s)	669, 1167, 3996
BsaI	GGTCTC	3 cut(s)	1044, 2276, 3582
BsaWI	WCCGGW	3 cut(s)	238, 732, 4069
BsaXI	ACNNNNNCTCC	6 cut(s)	734, 764, 2543, 2573, 4051, 4081
Bse118I	RCCGGY	1 cut(s)	875
Bse21I	CCTNAGG	3 cut(s)	2155, 2880, 3569
Bse3DI	GCAATG	2 cut(s)	235, 2258
Bse8I	GATNNNNATC	3 cut(s)	669, 1167, 3996
BseAI	TCCGGA	1 cut(s)	4069
BseBI	CCWGG	2 cut(s)	1653, 4082
BseCI	ATCGAT	1 cut(s)	2916
BseGI	GGATG	8 cut(s)	202, 798, 1155, 1348, 2238, 3673, 4077, 4090
BseJI	GATNNNNATC	3 cut(s)	669, 1167, 3996
BseMI	GCAATG	2 cut(s)	235, 2258
BseRI	GAGGAG	7 cut(s)	755, 983, 1987, 2847, 3575, 3714, 3883
BseSI	GKGCMC	4 cut(s)	520, 1894, 3180, 3734
BsgI	GTGCAG	1 cut(s)	1254
Bsh1236I	CGCG	1 cut(s)	378
BshFI	GGCC	4 cut(s)	462, 1369, 1529, 3389
BshNI	GGYRCC	3 cut(s)	2705, 2813, 3731
BshVI	ATCGAT	1 cut(s)	2916
BsiHKAI	GWGCWC	3 cut(s)	520, 814, 1894
BsiHKCI	CYCGRG	3 cut(s)	1364, 3087, 3231
BsiSI	CCGG	7 cut(s)	239, 469, 733, 876, 1365, 3386, 4070
BslFI	GGGAC	2 cut(s)	1634, 3118
BsmBI	CGTCTC	1 cut(s)	89
BsmFI	GGGAC	2 cut(s)	1634, 3118
BsmI	GAATGC	2 cut(s)	2302, 3172
BsnI	GGCC	4 cut(s)	462, 1369, 1529, 3389
Bso31I	GGTCTC	3 cut(s)	1044, 2276, 3582
BsoBI	CYCGRG	3 cut(s)	1364, 3087, 3231
Bsp119I	TTCGAA	1 cut(s)	4037
Bsp1286I	GDGCHC	5 cut(s)	520, 814, 1894, 3180, 3734
Bsp13I	TCCGGA	1 cut(s)	4069
Bsp1407I	TGTACA	1 cut(s)	1566
Bsp19I	CCATGG	2 cut(s)	2701, 3546
BspACI	CCGC	5 cut(s)	398, 1036, 2542, 3146, 3875
BspANI	GGCC	4 cut(s)	462, 1369, 1529, 3389
BspDI	ATCGAT	1 cut(s)	2916
BspEI	TCCGGA	1 cut(s)	4069
BspFNI	CGCG	1 cut(s)	378
BspHI	TCATGA	2 cut(s)	1420, 1704
BspLI	GGNNCC	5 cut(s)	854, 2707, 2815, 3106, 3733
BspOI	GCTAGC	2 cut(s)	2627, 4023
BspPI	GGATC	9 cut(s)	332, 362, 375, 550, 1157, 1231, 1542, 1931, 3128
BspT104I	TTCGAA	1 cut(s)	4037
BspT107I	GGYRCC	3 cut(s)	2705, 2813, 3731
BspTNI	GGTCTC	3 cut(s)	1044, 2276, 3582
BsrDI	GCAATG	2 cut(s)	235, 2258
BsrFI	RCCGGY	1 cut(s)	875
BsrGI	TGTACA	1 cut(s)	1566
BssAI	RCCGGY	1 cut(s)	875
BssSI	CACGAG	1 cut(s)	3639
BssT1I	CCWWGG	6 cut(s)	192, 404, 2242, 2701, 2817, 3546
Bst2BI	CACGAG	1 cut(s)	3639
Bst2UI	CCWGG	2 cut(s)	1653, 4082
Bst4CI	ACNGT	7 cut(s)	785, 1249, 3326, 3351, 3456, 3488, 3501
Bst6I	CTCTTC	5 cut(s)	2058, 2568, 3130, 3435, 3982
BstAPI	GCANNNNNTGC	1 cut(s)	1450
BstAUI	TGTACA	1 cut(s)	1566
BstBAI	YACGTR	2 cut(s)	251, 3719
BstBI	TTCGAA	1 cut(s)	4037
BstC8I	GCNNGC	7 cut(s)	873, 927, 2625, 3211, 3834, 3873, 4021
BstDSI	CCRYGG	3 cut(s)	784, 2701, 3546
BstEII	GGTNACC	1 cut(s)	3902
BstENI	CCTNNNNNAGG	1 cut(s)	4046
BstF5I	GGATG	8 cut(s)	202, 798, 1155, 1348, 2238, 3673, 4077, 4090
BstFNI	CGCG	1 cut(s)	378
BstH2I	RGCGCY	4 cut(s)	218, 730, 1644, 2368
BstHHI	GCGC	8 cut(s)	217, 228, 380, 729, 1643, 2367, 2495, 3145
BstMWI	GCNNNNNNNGC	9 cut(s)	223, 991, 1000, 1450, 1459, 2321, 2371, 2629, 3881
BstNI	CCWGG	2 cut(s)	1653, 4082
BstNSI	RCATGY	8 cut(s)	875, 899, 1448, 2606, 3614, 3788, 3836, 4067
BstPI	GGTNACC	1 cut(s)	3902
BstSCI	CCNGG	5 cut(s)	467, 1363, 1364, 1651, 4080
BstSFI	CTRYAG	4 cut(s)	1245, 1896, 2967, 3347
BstSLI	GKGCMC	4 cut(s)	520, 1894, 3180, 3734
BstSNI	TACGTA	2 cut(s)	251, 3719
BstUI	CGCG	1 cut(s)	378
BstV2I	GAAGAC	2 cut(s)	2987, 3806
BstX2I	RGATCY	9 cut(s)	133, 324, 354, 367, 542, 1223, 1534, 1936, 3133
BstYI	RGATCY	9 cut(s)	133, 324, 354, 367, 542, 1223, 1534, 1936, 3133
Bsu15I	ATCGAT	1 cut(s)	2916
Bsu36I	CCTNAGG	3 cut(s)	2155, 2880, 3569
BsuI	GTATCC	1 cut(s)	2878
BsuRI	GGCC	4 cut(s)	462, 1369, 1529, 3389
BsuTUI	ATCGAT	1 cut(s)	2916
BtgI	CCRYGG	3 cut(s)	784, 2701, 3546
BtsCI	GGATG	8 cut(s)	202, 798, 1155, 1348, 2238, 3673, 4077, 4090
BtsI	GCAGTG	4 cut(s)	518, 1806, 2715, 3621
BtsIMutI	CAGTG	9 cut(s)	518, 1254, 1311, 1806, 2203, 2715, 3018, 3258, 3621
Cac8I	GCNNGC	7 cut(s)	873, 927, 2625, 3211, 3834, 3873, 4021
CciI	TCATGA	2 cut(s)	1420, 1704
CfoI	GCGC	8 cut(s)	217, 228, 380, 729, 1643, 2367, 2495, 3145
Cfr10I	RCCGGY	1 cut(s)	875
Cfr13I	GGNCC	5 cut(s)	461, 1155, 1367, 3105, 3877
Cfr9I	CCCGGG	1 cut(s)	1364
ClaI	ATCGAT	1 cut(s)	2916
CseI	GACGC	2 cut(s)	71, 3018
CspCI	CAANNNNNGTGG	2 cut(s)	439, 474
DraI	TTTAAA	1 cut(s)	2125
Eam1104I	CTCTTC	5 cut(s)	2058, 2568, 3130, 3435, 3982
EarI	CTCTTC	5 cut(s)	2058, 2568, 3130, 3435, 3982
Eco105I	TACGTA	2 cut(s)	251, 3719
Eco130I	CCWWGG	6 cut(s)	192, 404, 2242, 2701, 2817, 3546
Eco31I	GGTCTC	3 cut(s)	1044, 2276, 3582
Eco32I	GATATC	2 cut(s)	2649, 3937
Eco47I	GGWCC	3 cut(s)	1155, 3105, 3877
Eco47III	AGCGCT	1 cut(s)	728
Eco57I	CTGAAG	2 cut(s)	1710, 1992
Eco81I	CCTNAGG	3 cut(s)	2155, 2880, 3569
Eco88I	CYCGRG	3 cut(s)	1364, 3087, 3231
Eco91I	GGTNACC	1 cut(s)	3902
EcoNI	CCTNNNNNAGG	1 cut(s)	4046
EcoO109I	RGGNCCY	1 cut(s)	3105
EcoO65I	GGTNACC	1 cut(s)	3902
EcoRII	CCWGG	2 cut(s)	1651, 4080
EcoRV	GATATC	2 cut(s)	2649, 3937
EcoT14I	CCWWGG	6 cut(s)	192, 404, 2242, 2701, 2817, 3546
EcoT22I	ATGCAT	1 cut(s)	1350
ErhI	CCWWGG	6 cut(s)	192, 404, 2242, 2701, 2817, 3546
Esp3I	CGTCTC	1 cut(s)	89
FalI	AAGNNNNNCTT	2 cut(s)	1750, 1782
FaqI	GGGAC	2 cut(s)	1634, 3118
FbaI	TGATCA	3 cut(s)	664, 2403, 2518
FblI	GTMKAC	1 cut(s)	2563
FokI	GGATG	8 cut(s)	209, 805, 1162, 1335, 2225, 3680, 4064, 4097
GlaI	GCGC	8 cut(s)	216, 227, 379, 728, 1642, 2366, 2494, 3144
GsuI	CTGGAG	7 cut(s)	114, 438, 828, 1048, 2406, 3150, 3490
HaeII	RGCGCY	4 cut(s)	218, 730, 1644, 2368
HaeIII	GGCC	4 cut(s)	462, 1369, 1529, 3389
HapII	CCGG	7 cut(s)	239, 469, 733, 876, 1365, 3386, 4070
HgaI	GACGC	2 cut(s)	71, 3018
HhaI	GCGC	8 cut(s)	217, 228, 380, 729, 1643, 2367, 2495, 3145
Hin6I	GCGC	8 cut(s)	215, 226, 378, 727, 1641, 2365, 2493, 3143
HinP1I	GCGC	8 cut(s)	215, 226, 378, 727, 1641, 2365, 2493, 3143
HincII	GTYRAC	6 cut(s)	141, 691, 781, 2162, 2209, 2343
HindII	GTYRAC	6 cut(s)	141, 691, 781, 2162, 2209, 2343
HindIII	AAGCTT	3 cut(s)	923, 978, 1764
HpaI	GTTAAC	1 cut(s)	2343
HpaII	CCGG	7 cut(s)	239, 469, 733, 876, 1365, 3386, 4070
HphI	GGTGA	6 cut(s)	253, 2741, 3275, 3345, 3656, 3914
Hpy99I	CGWCG	2 cut(s)	542, 1095
HpyCH4III	ACNGT	7 cut(s)	785, 1249, 3326, 3351, 3456, 3488, 3501
HpyCH4IV	ACGT	3 cut(s)	250, 1560, 3718
HpyF10VI	GCNNNNNNNGC	9 cut(s)	223, 991, 1000, 1450, 1459, 2321, 2371, 2629, 3881
HpySE526I	ACGT	3 cut(s)	250, 1560, 3718
HspAI	GCGC	8 cut(s)	215, 226, 378, 727, 1641, 2365, 2493, 3143
Kpn2I	TCCGGA	1 cut(s)	4069
KpnI	GGTACC	1 cut(s)	2709
Ksp22I	TGATCA	3 cut(s)	664, 2403, 2518
KspAI	GTTAAC	1 cut(s)	2343
LweI	GCATC	5 cut(s)	52, 265, 1106, 1357, 4075
MaeII	ACGT	3 cut(s)	250, 1560, 3718
MfeI	CAATTG	3 cut(s)	1545, 2228, 2486
MflI	RGATCY	9 cut(s)	133, 324, 354, 367, 542, 1223, 1534, 1936, 3133
MhlI	GDGCHC	5 cut(s)	520, 814, 1894, 3180, 3734
MlyI	GAGTC	8 cut(s)	197, 790, 903, 1120, 2204, 2654, 3308, 3928
MmeI	TCCRAC	9 cut(s)	265, 520, 770, 808, 2453, 2618, 2676, 3182, 3251
Mph1103I	ATGCAT	1 cut(s)	1350
MroI	TCCGGA	1 cut(s)	4069
MslI	CAYNNNNRTG	4 cut(s)	273, 876, 1422, 2601
MspA1I	CMGCKG	2 cut(s)	400, 1036
MspI	CCGG	7 cut(s)	239, 469, 733, 876, 1365, 3386, 4070
MspR9I	CCNGG	5 cut(s)	469, 1365, 1366, 1653, 4082
MssI	GTTTAAAC	1 cut(s)	2125
MunI	CAATTG	3 cut(s)	1545, 2228, 2486
Mva1269I	GAATGC	2 cut(s)	2302, 3172
MvaI	CCWGG	2 cut(s)	1653, 4082
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	9 cut(s)	223, 991, 1000, 1450, 1459, 2321, 2371, 2629, 3881
NciI	CCSGG	3 cut(s)	469, 1365, 1366
NcoI	CCATGG	2 cut(s)	2701, 3546
NheI	GCTAGC	2 cut(s)	2623, 4019
NlaIV	GGNNCC	5 cut(s)	854, 2707, 2815, 3106, 3733
NmuCI	GTSAC	8 cut(s)	1123, 1273, 2729, 3320, 3351, 3379, 3616, 3902
NsiI	ATGCAT	1 cut(s)	1350
NspI	RCATGY	8 cut(s)	875, 899, 1448, 2606, 3614, 3788, 3836, 4067
NspV	TTCGAA	1 cut(s)	4037
PaeI	GCATGC	2 cut(s)	875, 3836
PaeR7I	CTCGAG	1 cut(s)	3231
PagI	TCATGA	2 cut(s)	1420, 1704
PciI	ACATGT	2 cut(s)	895, 3784
PcsI	WCGNNNNNNNCGW	1 cut(s)	1111
PctI	GAATGC	2 cut(s)	2302, 3172
PfeI	GAWTC	9 cut(s)	265, 1131, 1280, 1475, 2131, 2845, 3631, 3819, 4034
PflFI	GACNNNGTC	1 cut(s)	3767
PflMI	CCANNNNNTGG	1 cut(s)	3552
PfoI	TCCNGGA	1 cut(s)	4080
PleI	GAGTC	8 cut(s)	196, 790, 903, 1119, 2204, 2654, 3307, 3927
PmeI	GTTTAAAC	1 cut(s)	2125
PpsI	GAGTC	8 cut(s)	196, 790, 903, 1119, 2204, 2654, 3307, 3927
Ppu21I	YACGTR	2 cut(s)	251, 3719
PpuMI	RGGWCCY	1 cut(s)	3105
PscI	ACATGT	2 cut(s)	895, 3784
PshBI	ATTAAT	1 cut(s)	2169
Psp5II	RGGWCCY	1 cut(s)	3105
Psp6I	CCWGG	2 cut(s)	1651, 4080
PspEI	GGTNACC	1 cut(s)	3902
PspGI	CCWGG	2 cut(s)	1651, 4080
PspN4I	GGNNCC	5 cut(s)	854, 2707, 2815, 3106, 3733
PspPI	GGNCC	5 cut(s)	461, 1155, 1367, 3105, 3877
PspPPI	RGGWCCY	1 cut(s)	3105
PspXI	VCTCGAGB	1 cut(s)	3231
PsuI	RGATCY	9 cut(s)	133, 324, 354, 367, 542, 1223, 1534, 1936, 3133
PsyI	GACNNNGTC	1 cut(s)	3767
RseI	CAYNNNNRTG	4 cut(s)	273, 876, 1422, 2601
Sau96I	GGNCC	5 cut(s)	461, 1155, 1367, 3105, 3877
ScaI	AGTACT	2 cut(s)	2515, 3247
SchI	GAGTC	8 cut(s)	197, 790, 903, 1120, 2204, 2654, 3308, 3928
ScrFI	CCNGG	5 cut(s)	469, 1365, 1366, 1653, 4082
SduI	GDGCHC	5 cut(s)	520, 814, 1894, 3180, 3734
SfaNI	GCATC	5 cut(s)	52, 265, 1106, 1357, 4075
SfcI	CTRYAG	4 cut(s)	1245, 1896, 2967, 3347
Sfr274I	CTCGAG	1 cut(s)	3231
SfuI	TTCGAA	1 cut(s)	4037
SinI	GGWCC	3 cut(s)	1155, 3105, 3877
SlaI	CTCGAG	1 cut(s)	3231
SmaI	CCCGGG	1 cut(s)	1366
SmiMI	CAYNNNNRTG	4 cut(s)	273, 876, 1422, 2601
SmlI	CTYRAG	4 cut(s)	652, 1793, 2673, 3231
SmoI	CTYRAG	4 cut(s)	652, 1793, 2673, 3231
SnaBI	TACGTA	2 cut(s)	251, 3719
SphI	GCATGC	2 cut(s)	875, 3836
SsiI	CCGC	5 cut(s)	398, 1036, 2542, 3146, 3875
StyD4I	CCNGG	5 cut(s)	467, 1363, 1364, 1651, 4080
StyI	CCWWGG	6 cut(s)	192, 404, 2242, 2701, 2817, 3546
TaaI	ACNGT	7 cut(s)	785, 1249, 3326, 3351, 3456, 3488, 3501
TaiI	ACGT	3 cut(s)	253, 1563, 3721
TatI	WGTACW	4 cut(s)	1566, 2114, 2513, 3245
TauI	GCSGC	1 cut(s)	3148
TfiI	GAWTC	9 cut(s)	265, 1131, 1280, 1475, 2131, 2845, 3631, 3819, 4034
TscAI	CASTG	9 cut(s)	525, 1254, 1318, 1806, 2203, 2722, 3025, 3265, 3621
TseFI	GTSAC	8 cut(s)	1123, 1273, 2729, 3320, 3351, 3379, 3616, 3902
Tsp45I	GTSAC	8 cut(s)	1123, 1273, 2729, 3320, 3351, 3379, 3616, 3902
TspMI	CCCGGG	1 cut(s)	1364
TspRI	CASTG	9 cut(s)	525, 1254, 1318, 1806, 2203, 2722, 3025, 3265, 3621
Tth111I	GACNNNGTC	1 cut(s)	3767
Van91I	CCANNNNNTGG	1 cut(s)	3552
VneI	GTGCAC	2 cut(s)	516, 1890
VpaK11BI	GGWCC	3 cut(s)	1155, 3105, 3877
VspI	ATTAAT	1 cut(s)	2169
XagI	CCTNNNNNAGG	1 cut(s)	4046
XapI	RAATTY	1 cut(s)	1400
XbaI	TCTAGA	1 cut(s)	3584
XceI	RCATGY	8 cut(s)	875, 899, 1448, 2606, 3614, 3788, 3836, 4067
XhoI	CTCGAG	1 cut(s)	3231
XmaI	CCCGGG	1 cut(s)	1364
XmiI	GTMKAC	1 cut(s)	2563
ZrmI	AGTACT	2 cut(s)	2515, 3247
Zsp2I	ATGCAT	1 cut(s)	1350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.