Rorug06G0126600

Lysine histidine transporter-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
17589873 .. 17591219
1347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0126600.1

Sequence Viewer

Length: 1218 bp
ATGGAAGAATTGAACAAATGGTTGTTAGAAAGGGAGCGTGAAAATATGGAAGAGCTCGAGCGGATTCAAGCTACAAACTCTCAAGCGGCTGCAATGGTGGCGCAATATCAATTATCGGAGACACCTAGAGGGCGTGGTTCAAGACCTGGCCGTGCCCCAAATGTCGAAAGACATAGAGAAGTCCGAGGTCATTTTCTCCTGCAGGATTATTTTGTCGAACGTCCAGTGTACGACGAAGCAGGCTTTCGAAGGAGGTACAGAATGCAAACACATGTCTTCCAACGCATAATGGAGGATCTTTGCAACCTCGATAGTTTTTGGGGGCAAAAATCAGATGCCACTGGAAAAATGGGATTGCTTCCCGAACAAAAAATGACAGGTGCCCTGAGAATGCTTGCGTACGGTGCAGCTGCTGATCAATGTGATGAAATCACTAGAATGGGAGCTTCTACGGCGCTGAAATGTCTGAAGAAGTTCTGTAGACAAGTCGAGTTTCTTTACGCTGGGTGGTTCCTTCGTCCTCCAAATCCTGCTGACTTACATAGGCTTCTCAATAGAGGACAACGCCGTGGGTTTCCAGGCATGATCGGAAGCATCGATTGCATGCATTGGGAGTGGAAGAATTGCCCAACTGGCTGGGCTGGAGCTTTCTCAGGTCGAAAGGGTAGACCAACTATTATTCTTGAAGCAGTGGCGTCTTACGATACGCATATATGGCATGCTTTCTTTGGAACTCCTGGAGCTCAAAATGACCTCAACGTTCTTGGTGCATCTAATGTGTTCGAGCGTGTCATAGGTGGAACTGCTCCTCTGGTTGAGTTTGAGGCTTACCGCAAAGATGTGGAAAGGTGTTTTGGTATCCTCCAATCTCGATGGGCCATACTGCGTCATGGTGCTAGATTGTTTAAACTGGAGGATCTTCGAGCCATCATGATAAGTTGTATCATTCTTCATAACATGATTGTGGAGGATGAGTTTGTTGAGGAAGAATTTGCGGAGCCTGAAGAAGCTGATCTAATGAATCCAGCAATGGCAACCGTCTATGATCGGCCTGTGCATCCTGATACTGGAGAGGCTATTCCTTTCGAACCAGTGGGGAGAGATGGACAAAATCTTCCTTCATTCATGGATCGTGAATTTCAGGTAGAGTCAGCCTACCTCCACAAATGCCTACAAGATGATTTGGTGATGCACAACTGGAACATGGATGGTAACTGA

Protein Analysis

405

Amino Acids

46.51

Weight (kDa)

5.72

Isoelectric Point (pI)

47.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_tran PF04827 171 - 275 6.5e-42 Plant transposon protein
Plant_tran PF04827 274 - 325 4.9e-17 Plant transposon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019817)

Species Orthologous Gene IDs
pyrus_communis pycom05g12650
rosa_chinensis RchiOBHm_Chr6g0279641
rosa_multiflora Rmu_sc0004010.1_g000006 Rmu_sc0004649.1_g000004
rosa_rugosa Rorug06G0126600 Rorug06G0126700
rosa_samantha Rh6BG239300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 380
AccBSI CCGCTC 1 cut(s) 61
AccI GTMKAC 2 cut(s) 481, 667
AciI CCGC 4 cut(s) 61, 86, 832, 995
AclI AACGTT 1 cut(s) 759
AclWI GGATC 3 cut(s) 303, 924, 1137
AcoI YGGCCR 1 cut(s) 148
AcsI RAATTY 2 cut(s) 989, 1136
AcuI CTGAAG 2 cut(s) 488, 1023
AcyI GRCGYC 1 cut(s) 695
AfaI GTAC 3 cut(s) 230, 257, 401
AfiI CCNNNNNNNGG 1 cut(s) 1067
AflIII ACRYGT 1 cut(s) 271
AgsI TTSAA 4 cut(s) 13, 68, 141, 686
AjnI CCWGG 3 cut(s) 145, 577, 736
AjuI GAANNNNNNNTTGG 2 cut(s) 837, 869
AluBI AGCT 7 cut(s) 55, 71, 410, 446, 647, 743, 1010
AluI AGCT 7 cut(s) 55, 71, 410, 446, 647, 743, 1010
Alw21I GWGCWC 2 cut(s) 57, 745
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 3 cut(s) 303, 924, 1137
AlwNI CAGNNNCTG 1 cut(s) 413
Ama87I CYCGRG 1 cut(s) 56
AoxI GGCC 3 cut(s) 148, 876, 1049
ApeKI GCWGC 3 cut(s) 89, 407, 410
ApoI RAATTY 2 cut(s) 989, 1136
Asp700I GAANNNNTTC 1 cut(s) 473
AspLEI GCGC 2 cut(s) 103, 457
AspS9I GGNCC 1 cut(s) 876
AsuHPI GGTGA 1 cut(s) 1198
AsuII TTCGAA 2 cut(s) 247, 1086
AvaI CYCGRG 1 cut(s) 56
BaeGI GKGCMC 2 cut(s) 157, 385
BanI GGYRCC 1 cut(s) 380
BanII GRGCYC 2 cut(s) 57, 745
BbsI GAAGAC 1 cut(s) 268
Bbv12I GWGCWC 2 cut(s) 57, 745
BbvI GCAGC 3 cut(s) 76, 397, 419
BccI CCATC 4 cut(s) 867, 935, 1097, 1202
BceAI ACGGC 3 cut(s) 135, 468, 552
BciT130I CCWGG 3 cut(s) 147, 579, 738
BciVI GTATCC 1 cut(s) 869
BclI TGATCA 1 cut(s) 415
BcoDI GTCTC 1 cut(s) 113
BfaI CTAG 3 cut(s) 126, 435, 897
BfmI CTRYAG 2 cut(s) 200, 478
BfoI RGCGCY 1 cut(s) 458
BfuI GTATCC 1 cut(s) 869
BglI GCCNNNNNGGC 1 cut(s) 633
BisI GCNGC 4 cut(s) 87, 90, 408, 411
BlsI GCNGC 4 cut(s) 88, 91, 409, 412
Bme1390I CCNGG 3 cut(s) 147, 579, 738
BmeT110I CYCGRG 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 876
BmiI GGNNCC 3 cut(s) 382, 512, 999
BmrFI CCNGG 3 cut(s) 147, 579, 738
BmsI GCATC 5 cut(s) 325, 603, 779, 1066, 1179
BpiI GAAGAC 1 cut(s) 268
BpmI CTGGAG 4 cut(s) 663, 759, 932, 1089
Bpu14I TTCGAA 2 cut(s) 247, 1086
BpuEI CTTGAG 1 cut(s) 66
Bsa29I ATCGAT 1 cut(s) 597
BsaHI GRCGYC 1 cut(s) 695
BsaJI CCNNGG 2 cut(s) 184, 568
BsaXI ACNNNNNCTCC 2 cut(s) 959, 989
Bsc4I CCNNNNNNNGG 1 cut(s) 1067
Bse1I ACTGG 7 cut(s) 224, 346, 637, 915, 1072, 1091, 1202
Bse3DI GCAATG 2 cut(s) 99, 1035
BseBI CCWGG 3 cut(s) 147, 579, 738
BseCI ATCGAT 1 cut(s) 597
BseDI CCNNGG 2 cut(s) 184, 568
BseGI GGATG 3 cut(s) 976, 1057, 1213
BseLI CCNNNNNNNGG 1 cut(s) 1067
BseMI GCAATG 2 cut(s) 99, 1035
BseMII CTCAG 2 cut(s) 377, 666
BseNI ACTGG 7 cut(s) 224, 346, 637, 915, 1072, 1091, 1202
BseRI GAGGAG 1 cut(s) 798
BseSI GKGCMC 2 cut(s) 157, 385
BseXI GCAGC 3 cut(s) 76, 397, 419
BseYI CCCAGC 2 cut(s) 503, 636
BsgI GTGCAG 1 cut(s) 426
BshFI GGCC 3 cut(s) 150, 878, 1051
BshNI GGYRCC 1 cut(s) 380
BshVI ATCGAT 1 cut(s) 597
BsiHKAI GWGCWC 2 cut(s) 57, 745
BsiHKCI CYCGRG 1 cut(s) 56
BsiWI CGTACG 1 cut(s) 399
BslI CCNNNNNNNGG 1 cut(s) 1067
BsmAI GTCTC 1 cut(s) 113
BsmI GAATGC 2 cut(s) 267, 396
BsnI GGCC 3 cut(s) 150, 878, 1051
BsoBI CYCGRG 1 cut(s) 56
Bsp119I TTCGAA 2 cut(s) 247, 1086
Bsp1286I GDGCHC 4 cut(s) 57, 157, 385, 745
Bsp143I GATC 7 cut(s) 295, 415, 585, 916, 1012, 1045, 1129
BspACI CCGC 4 cut(s) 61, 86, 832, 995
BspANI GGCC 3 cut(s) 150, 878, 1051
BspCNI CTCAG 2 cut(s) 378, 665
BspDI ATCGAT 1 cut(s) 597
BspHI TCATGA 1 cut(s) 930
BspLI GGNNCC 3 cut(s) 382, 512, 999
BspMAI CTGCAG 1 cut(s) 204
BspPI GGATC 3 cut(s) 303, 924, 1137
BspQI GCTCTTC 1 cut(s) 45
BspT104I TTCGAA 2 cut(s) 247, 1086
BspT107I GGYRCC 1 cut(s) 380
BsrBI CCGCTC 1 cut(s) 61
BsrDI GCAATG 2 cut(s) 99, 1035
BsrI ACTGG 7 cut(s) 224, 346, 637, 915, 1072, 1091, 1202
BssECI CCNNGG 2 cut(s) 184, 568
BssMI GATC 7 cut(s) 295, 415, 585, 916, 1012, 1045, 1129
BssNI GRCGYC 1 cut(s) 695
Bst2UI CCWGG 3 cut(s) 147, 579, 738
Bst4CI ACNGT 2 cut(s) 404, 1039
Bst6I CTCTTC 1 cut(s) 45
BstACI GRCGYC 1 cut(s) 695
BstAPI GCANNNNNTGC 1 cut(s) 600
BstBI TTCGAA 2 cut(s) 247, 1086
BstC8I GCNNGC 4 cut(s) 241, 396, 605, 720
BstDEI CTNAG 2 cut(s) 386, 652
BstDSI CCRYGG 1 cut(s) 568
BstF5I GGATG 3 cut(s) 976, 1057, 1213
BstH2I RGCGCY 1 cut(s) 458
BstHHI GCGC 2 cut(s) 103, 457
BstKTI GATC 7 cut(s) 298, 418, 588, 919, 1015, 1048, 1132
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 7 cut(s) 295, 415, 585, 916, 1012, 1045, 1129
BstMWI GCNNNNNNNGC 6 cut(s) 98, 404, 452, 600, 633, 715
BstNI CCWGG 3 cut(s) 147, 579, 738
BstNSI RCATGY 3 cut(s) 275, 607, 722
BstSCI CCNGG 3 cut(s) 145, 577, 736
BstSFI CTRYAG 2 cut(s) 200, 478
BstSLI GKGCMC 2 cut(s) 157, 385
BstV1I GCAGC 3 cut(s) 76, 397, 419
BstV2I GAAGAC 1 cut(s) 268
BstX2I RGATCY 2 cut(s) 295, 916
BstXI CCANNNNNNTGG 1 cut(s) 636
BstYI RGATCY 2 cut(s) 295, 916
Bsu15I ATCGAT 1 cut(s) 597
BsuI GTATCC 1 cut(s) 869
BsuRI GGCC 3 cut(s) 150, 878, 1051
BsuTUI ATCGAT 1 cut(s) 597
BtgI CCRYGG 1 cut(s) 568
BtsCI GGATG 3 cut(s) 976, 1057, 1213
BtsI GCAGTG 1 cut(s) 696
BtsIMutI CAGTG 4 cut(s) 231, 339, 696, 1098
Cac8I GCNNGC 4 cut(s) 241, 396, 605, 720
CaiI CAGNNNCTG 1 cut(s) 413
CciI TCATGA 1 cut(s) 930
CfoI GCGC 2 cut(s) 103, 457
Cfr13I GGNCC 1 cut(s) 876
ClaI ATCGAT 1 cut(s) 597
CseI GACGC 2 cut(s) 684, 875
Csp6I GTAC 3 cut(s) 229, 256, 400
CviAII CATG 9 cut(s) 272, 583, 604, 719, 890, 931, 958, 1126, 1204
CviQI GTAC 3 cut(s) 229, 256, 400
DdeI CTNAG 2 cut(s) 386, 652
DpnI GATC 7 cut(s) 297, 417, 587, 918, 1014, 1047, 1131
DpnII GATC 7 cut(s) 295, 415, 585, 916, 1012, 1045, 1129
DraI TTTAAA 1 cut(s) 907
EaeI YGGCCR 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Ecl136II GAGCTC 2 cut(s) 55, 743
Eco24I GRGCYC 2 cut(s) 57, 745
Eco53kI GAGCTC 2 cut(s) 55, 743
Eco57I CTGAAG 2 cut(s) 488, 1023
Eco88I CYCGRG 1 cut(s) 56
EcoICRI GAGCTC 2 cut(s) 55, 743
EcoRII CCWGG 3 cut(s) 145, 577, 736
EcoT22I ATGCAT 1 cut(s) 609
EcoT38I GRGCYC 2 cut(s) 57, 745
FaeI CATG 9 cut(s) 275, 586, 607, 722, 893, 934, 961, 1129, 1207
FatI CATG 9 cut(s) 271, 582, 603, 718, 889, 930, 957, 1125, 1203
FbaI TGATCA 1 cut(s) 415
FblI GTMKAC 2 cut(s) 481, 667
Fnu4HI GCNGC 4 cut(s) 87, 90, 408, 411
FokI GGATG 2 cut(s) 983, 1044
FriOI GRGCYC 2 cut(s) 57, 745
Fsp4HI GCNGC 4 cut(s) 87, 90, 408, 411
FspBI CTAG 3 cut(s) 126, 435, 897
GlaI GCGC 2 cut(s) 102, 456
GluI GCNGC 4 cut(s) 87, 90, 408, 411
GsaI CCCAGC 2 cut(s) 507, 640
GsuI CTGGAG 4 cut(s) 663, 759, 932, 1089
HaeII RGCGCY 1 cut(s) 458
HaeIII GGCC 3 cut(s) 150, 878, 1051
HgaI GACGC 2 cut(s) 684, 875
HhaI GCGC 2 cut(s) 103, 457
Hin1I GRCGYC 1 cut(s) 695
Hin1II CATG 9 cut(s) 275, 586, 607, 722, 893, 934, 961, 1129, 1207
Hin6I GCGC 2 cut(s) 101, 455
HinP1I GCGC 2 cut(s) 101, 455
HinfI GANTC 3 cut(s) 64, 1021, 1148
HphI GGTGA 1 cut(s) 1198
Hpy166II GTNNAC 3 cut(s) 229, 482, 668
Hpy188I TCNGA 5 cut(s) 118, 185, 334, 468, 590
Hpy188III TCNNGA 7 cut(s) 141, 362, 683, 870, 931, 1061, 1133
Hpy8I GTNNAC 3 cut(s) 229, 482, 668
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 3 cut(s) 243, 524, 1128
HpyCH4III ACNGT 2 cut(s) 404, 1039
HpyCH4IV ACGT 2 cut(s) 220, 759
HpyF10VI GCNNNNNNNGC 6 cut(s) 98, 404, 452, 600, 633, 715
HpyF3I CTNAG 2 cut(s) 386, 652
HpySE526I ACGT 2 cut(s) 220, 759
Hsp92I GRCGYC 1 cut(s) 695
Hsp92II CATG 9 cut(s) 275, 586, 607, 722, 893, 934, 961, 1129, 1207
HspAI GCGC 2 cut(s) 101, 455
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 7 cut(s) 295, 415, 585, 916, 1012, 1045, 1129
LguI GCTCTTC 1 cut(s) 45
LmnI GCTCC 6 cut(s) 34, 443, 644, 740, 811, 997
Lsp1109I GCAGC 3 cut(s) 76, 397, 419
LweI GCATC 5 cut(s) 325, 603, 779, 1066, 1179
MaeI CTAG 3 cut(s) 126, 435, 897
MaeII ACGT 2 cut(s) 220, 759
MaeIII GTNAC 1 cut(s) 1211
MalI GATC 7 cut(s) 297, 417, 587, 918, 1014, 1047, 1131
MbiI CCGCTC 1 cut(s) 61
MboI GATC 7 cut(s) 295, 415, 585, 916, 1012, 1045, 1129
MflI RGATCY 2 cut(s) 295, 916
MhlI GDGCHC 4 cut(s) 57, 157, 385, 745
MluCI AATT 5 cut(s) 8, 110, 622, 989, 1136
MlyI GAGTC 1 cut(s) 1157
MmeI TCCRAC 1 cut(s) 304
Mph1103I ATGCAT 1 cut(s) 609
MroXI GAANNNNTTC 1 cut(s) 473
MseI TTAA 1 cut(s) 906
MslI CAYNNNNRTG 2 cut(s) 437, 962
MspA1I CMGCKG 1 cut(s) 410
MspR9I CCNGG 3 cut(s) 147, 579, 738
MssI GTTTAAAC 1 cut(s) 907
Mva1269I GAATGC 2 cut(s) 267, 396
MvaI CCWGG 3 cut(s) 147, 579, 738
MwoI GCNNNNNNNGC 6 cut(s) 98, 404, 452, 600, 633, 715
NdeII GATC 7 cut(s) 295, 415, 585, 916, 1012, 1045, 1129
NlaIII CATG 9 cut(s) 275, 586, 607, 722, 893, 934, 961, 1129, 1207
NlaIV GGNNCC 3 cut(s) 382, 512, 999
NsiI ATGCAT 1 cut(s) 609
NspI RCATGY 3 cut(s) 275, 607, 722
NspV TTCGAA 2 cut(s) 247, 1086
PaeI GCATGC 2 cut(s) 607, 722
PaeR7I CTCGAG 1 cut(s) 56
PagI TCATGA 1 cut(s) 930
PciI ACATGT 1 cut(s) 271
PciSI GCTCTTC 1 cut(s) 45
PcsI WCGNNNNNNNCGW 1 cut(s) 594
PctI GAATGC 2 cut(s) 267, 396
PdmI GAANNNNTTC 1 cut(s) 473
PfeI GAWTC 2 cut(s) 64, 1021
Pfl23II CGTACG 1 cut(s) 399
PfoI TCCNGGA 1 cut(s) 736
PkrI GCNGC 4 cut(s) 88, 91, 409, 412
PleI GAGTC 1 cut(s) 1156
PmeI GTTTAAAC 1 cut(s) 907
PpsI GAGTC 1 cut(s) 1156
PscI ACATGT 1 cut(s) 271
Psp124BI GAGCTC 2 cut(s) 57, 745
Psp1406I AACGTT 1 cut(s) 759
Psp6I CCWGG 3 cut(s) 145, 577, 736
PspFI CCCAGC 2 cut(s) 503, 636
PspGI CCWGG 3 cut(s) 145, 577, 736
PspLI CGTACG 1 cut(s) 399
PspN4I GGNNCC 3 cut(s) 382, 512, 999
PspPI GGNCC 1 cut(s) 876
PspXI VCTCGAGB 1 cut(s) 56
PstI CTGCAG 1 cut(s) 204
PstNI CAGNNNCTG 1 cut(s) 413
PsuI RGATCY 2 cut(s) 295, 916
PvuII CAGCTG 1 cut(s) 410
RsaI GTAC 3 cut(s) 230, 257, 401
RsaNI GTAC 3 cut(s) 229, 256, 400
RseI CAYNNNNRTG 2 cut(s) 437, 962
SacI GAGCTC 2 cut(s) 57, 745
SapI GCTCTTC 1 cut(s) 45
SaqAI TTAA 1 cut(s) 906
SatI GCNGC 4 cut(s) 87, 90, 408, 411
Sau3AI GATC 7 cut(s) 295, 415, 585, 916, 1012, 1045, 1129
Sau96I GGNCC 1 cut(s) 876
SbfI CCTGCAGG 1 cut(s) 204
SchI GAGTC 1 cut(s) 1157
ScrFI CCNGG 3 cut(s) 147, 579, 738
SdaI CCTGCAGG 1 cut(s) 204
SduI GDGCHC 4 cut(s) 57, 157, 385, 745
SfaNI GCATC 5 cut(s) 325, 603, 779, 1066, 1179
SfcI CTRYAG 2 cut(s) 200, 478
Sfr274I CTCGAG 1 cut(s) 56
SfuI TTCGAA 2 cut(s) 247, 1086
SlaI CTCGAG 1 cut(s) 56
SmiMI CAYNNNNRTG 2 cut(s) 437, 962
SmlI CTYRAG 2 cut(s) 56, 81
SmoI CTYRAG 2 cut(s) 56, 81
SphI GCATGC 2 cut(s) 607, 722
Sse8387I CCTGCAGG 1 cut(s) 204
Sse9I AATT 5 cut(s) 8, 110, 622, 989, 1136
SsiI CCGC 4 cut(s) 61, 86, 832, 995
SspMI CTAG 3 cut(s) 126, 435, 897
SstI GAGCTC 2 cut(s) 57, 745
StyD4I CCNGG 3 cut(s) 145, 577, 736
TaaI ACNGT 2 cut(s) 404, 1039
TaiI ACGT 2 cut(s) 223, 762
TasI AATT 5 cut(s) 8, 110, 622, 989, 1136
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 2 cut(s) 64, 1021
Tru1I TTAA 1 cut(s) 906
Tru9I TTAA 1 cut(s) 906
TscAI CASTG 4 cut(s) 231, 346, 696, 1098
TseI GCWGC 3 cut(s) 89, 407, 410
TspDTI ATGAA 5 cut(s) 441, 941, 1034, 1110, 1114
TspRI CASTG 4 cut(s) 231, 346, 696, 1098
XapI RAATTY 2 cut(s) 989, 1136
XceI RCATGY 3 cut(s) 275, 607, 722
XcmI CCANNNNNNNNNTGG 1 cut(s) 346
XhoI CTCGAG 1 cut(s) 56
XmiI GTMKAC 2 cut(s) 481, 667
XmnI GAANNNNTTC 1 cut(s) 473
XspI CTAG 3 cut(s) 126, 435, 897
Zsp2I ATGCAT 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.