Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0011392

Physical Location & Seq

Genomic Coordinates Forward (+)

19675863 .. 19676533

Gene Structure 671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g16380.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGCAGAATCTTCATTCATCGGAAGCCGCAAGTCTGTTAGTGATTTCCATCCTGTTGAAGTTCCTCCCAGTTGCCCGCTCAATTTTGATGAAGATATTGAAGAGGTTTGTGATCTGTGCTAACCATATCACTTATGACTCCTTTTCTGTTATTCAGTTTTTCGGAAAAGCTACTAGAACTATCAGGCAAAATGAGAAATTGTATACAGCTGAAGGTATTCTCAATCCTAAGCTAAAGAAAGCAGAAAGGAAGAAAAAGAAAAAGGCCAAGTCAGCCGCAGCCTCAGTCGACGCTATGGATGCTGACGGTGACTATGACTTTAAAGTGGATTACAAGAACAAGGGATCCGCTATGGATGTTAGTGATGGTCAACTTATAGGAAAGGTTCCGATGTCTGGTACTGGATTTGATGAACCGGAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005911 GO:0006355 GO:0007275 GO:0008150 GO:0009506 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0022613 GO:0030054 GO:0030856 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0042254 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0045892 GO:0045934 GO:0045995 GO:0048316 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048507 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0055044 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

GN3L_Grn1 MMR_HSR1

Protein Analysis

142

Amino Acids

15.63

Weight (kDa)

9.57

Isoelectric Point (pI)

29.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07050
fragaria_vesca	FvH4_3g29200 FvH4_3g29200
malus_domestica	MD05G1177400.v1.1 MD10G1165800.v1.1
prunus_persica	Prupe.8G204300_v2.0.a1
pyrus_communis	pycom05g16330 pycom05g16380 pycom10g14300
rosa_chinensis	RchiOBHm_Chr6g0285031
rosa_laevigata	RLG00000012684
rosa_multiflora	Rmu_sc0002478.1_g000012
rosa_roxburghii	Rroxscaffold_7G00183820 Rroxscaffold_7G00184090
rosa_rugosa	Rorug06G0170100
rosa_samantha	Rh6AG281800 Rh6BG282400 Rh6CG284100 Rh6DG277300
rosa_wichuraiana	Rw6G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	78
AccI	GTMKAC	2 cut(s)	203, 288
AciI	CCGC	4 cut(s)	27, 76, 276, 348
AclWI	GGATC	2 cut(s)	339, 352
AcuI	CTGAAG	1 cut(s)	231
AfaI	GTAC	1 cut(s)	400
AfiI	CCNNNNNNNGG	1 cut(s)	395
AgsI	TTSAA	2 cut(s)	58, 100
AloI	GAACNNNNNNTCC	2 cut(s)	329, 361
AluBI	AGCT	3 cut(s)	170, 209, 232
AluI	AGCT	3 cut(s)	170, 209, 232
AlwI	GGATC	2 cut(s)	339, 352
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	1 cut(s)	278
Asp700I	GAANNNNTTC	1 cut(s)	216
AsuHPI	GGTGA	1 cut(s)	320
BamHI	GGATCC	1 cut(s)	344
BbvI	GCAGC	1 cut(s)	290
BccI	CCATC	2 cut(s)	56, 359
BfaI	CTAG	1 cut(s)	174
BisI	GCNGC	3 cut(s)	27, 276, 279
BlsI	GCNGC	3 cut(s)	28, 277, 280
BmiI	GGNNCC	2 cut(s)	346, 387
BmrI	ACTGGG	1 cut(s)	62
BmsI	GCATC	1 cut(s)	289
BmuI	ACTGGG	1 cut(s)	62
Bpu10I	CCTNAGC	1 cut(s)	228
BsaBI	GATNNNNATC	1 cut(s)	47
BsaWI	WCCGGW	1 cut(s)	415
Bsc4I	CCNNNNNNNGG	1 cut(s)	395
Bse1I	ACTGG	2 cut(s)	68, 406
Bse8I	GATNNNNATC	1 cut(s)	47
BseGI	GGATG	3 cut(s)	48, 304, 361
BseJI	GATNNNNATC	1 cut(s)	47
BseLI	CCNNNNNNNGG	1 cut(s)	395
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	2 cut(s)	68, 406
BseXI	GCAGC	1 cut(s)	290
BshFI	GGCC	1 cut(s)	266
BsiSI	CCGG	1 cut(s)	416
BslI	CCNNNNNNNGG	1 cut(s)	395
BsnI	GGCC	1 cut(s)	266
Bsp143I	GATC	2 cut(s)	111, 344
BspACI	CCGC	4 cut(s)	27, 76, 276, 348
BspANI	GGCC	1 cut(s)	266
BspCNI	CTCAG	1 cut(s)	296
BspLI	GGNNCC	2 cut(s)	346, 387
BspPI	GGATC	2 cut(s)	339, 352
BsrBI	CCGCTC	1 cut(s)	78
BsrI	ACTGG	2 cut(s)	68, 406
BssMI	GATC	2 cut(s)	111, 344
BssNAI	GTATAC	1 cut(s)	204
Bst1107I	GTATAC	1 cut(s)	204
Bst4CI	ACNGT	1 cut(s)	308
Bst6I	CTCTTC	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	2 cut(s)	228, 283
BstF5I	GGATG	3 cut(s)	48, 304, 361
BstKTI	GATC	2 cut(s)	114, 347
BstMBI	GATC	2 cut(s)	111, 344
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 299
BstV1I	GCAGC	1 cut(s)	290
BstX2I	RGATCY	1 cut(s)	344
BstYI	RGATCY	1 cut(s)	344
BstZ17I	GTATAC	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	266
BtsCI	GGATG	3 cut(s)	48, 304, 361
Cac8I	GCNNGC	1 cut(s)	76
CseI	GACGC	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	399
CviJI	RGCY	7 cut(s)	26, 170, 209, 232, 266, 275, 281
CviKI_1	RGCY	7 cut(s)	26, 170, 209, 232, 266, 275, 281
CviQI	GTAC	1 cut(s)	399
DdeI	CTNAG	2 cut(s)	228, 283
DpnI	GATC	2 cut(s)	113, 346
DpnII	GATC	2 cut(s)	111, 344
DraI	TTTAAA	1 cut(s)	322
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Eco57I	CTGAAG	1 cut(s)	231
FaiI	YATR	7 cut(s)	126, 135, 204, 296, 315, 353, 377
FauI	CCCGC	1 cut(s)	83
FblI	GTMKAC	2 cut(s)	203, 288
Fnu4HI	GCNGC	3 cut(s)	27, 276, 279
FokI	GGATG	3 cut(s)	35, 311, 368
Fsp4HI	GCNGC	3 cut(s)	27, 276, 279
FspBI	CTAG	1 cut(s)	174
GluI	GCNGC	3 cut(s)	27, 276, 279
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	1 cut(s)	416
HgaI	GACGC	1 cut(s)	299
HincII	GTYRAC	2 cut(s)	289, 371
HindII	GTYRAC	2 cut(s)	289, 371
HinfI	GANTC	2 cut(s)	7, 137
HpaII	CCGG	1 cut(s)	416
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	3 cut(s)	204, 289, 371
Hpy188I	TCNGA	3 cut(s)	22, 164, 390
Hpy8I	GTNNAC	3 cut(s)	204, 289, 371
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 299
HpyF3I	CTNAG	2 cut(s)	228, 283
Kzo9I	GATC	2 cut(s)	111, 344
LpnPI	CCDG	5 cut(s)	65, 81, 169, 381, 387
Lsp1109I	GCAGC	1 cut(s)	290
LweI	GCATC	1 cut(s)	289
MaeI	CTAG	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	2 cut(s)	113, 346
MbiI	CCGCTC	1 cut(s)	78
MboI	GATC	2 cut(s)	111, 344
MboII	GAAGA	3 cut(s)	103, 112, 262
MflI	RGATCY	1 cut(s)	344
MluCI	AATT	2 cut(s)	81, 197
MlyI	GAGTC	1 cut(s)	131
MnlI	CCTC	3 cut(s)	74, 96, 292
MroXI	GAANNNNTTC	1 cut(s)	216
MseI	TTAA	1 cut(s)	321
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	1 cut(s)	416
MwoI	GCNNNNNNNGC	2 cut(s)	272, 299
NdeII	GATC	2 cut(s)	111, 344
NlaIV	GGNNCC	2 cut(s)	346, 387
NmuCI	GTSAC	1 cut(s)	308
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	7
PkrI	GCNGC	3 cut(s)	28, 277, 280
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
PspN4I	GGNNCC	2 cut(s)	346, 387
PsuI	RGATCY	1 cut(s)	344
PvuII	CAGCTG	1 cut(s)	209
RsaI	GTAC	1 cut(s)	400
RsaNI	GTAC	1 cut(s)	399
SalI	GTCGAC	1 cut(s)	287
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	3 cut(s)	27, 276, 279
Sau3AI	GATC	2 cut(s)	111, 344
SchI	GAGTC	1 cut(s)	131
SetI	ASST	6 cut(s)	107, 172, 211, 217, 234, 387
SfaNI	GCATC	1 cut(s)	289
Sse9I	AATT	2 cut(s)	81, 197
SsiI	CCGC	4 cut(s)	27, 76, 276, 348
SspMI	CTAG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	308
TaqI	TCGA	1 cut(s)	288
TasI	AATT	2 cut(s)	81, 197
TauI	GCSGC	2 cut(s)	29, 278
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	3 cut(s)	6, 104, 426
XmiI	GTMKAC	2 cut(s)	203, 288
XmnI	GAANNNNTTC	1 cut(s)	216
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.