Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011392

Physical Location & Seq

Genomic Coordinates Forward (+)

25103986 .. 25105613

Gene Structure 1628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0170100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGACTCGGCTGGGAACATCAGAACTAGCGGGTTGAATACTGCGGGAGCATGCGGTGAGGATGTTAACTGTCCTATTCAAAGGTGGTGTCACCTATGCGGCCAGGTCCAGCAGGTAGTTAAAGGACCACGCTCTGAAGAATGCCCACCTTTTGACGGCAAGCACCCTCCCAAGGAAGGGCCGGATGAAAGTCCCCGATGCCCTCTCTGTGAAGGGAACATGACGGTGATGCAGCATTGGGTGCCTGAAATCAAGAAGCTGAGGCCGTACTGGAGGTGTGCCGGTACCAACGGGTTCCCATATTGCAGGGGGTATAGATGGGTGGACGAGATGACCGTGGGATGCACCGAGCATAATGCAGGGGACATTTATGCACGTACATTGCATAACTATCCGAACCTCACAATGTACGGTCCTAATTGTGAAGTGTGTGATGGCTTCATGATGTCGTTTATATCACGATCTGAATTGAATCCAGGCAGGCCTTATTGGTTCTGCTATGGTTACCCTGGTCCAATCCACAGGCCACAATTCATATGGGGAGATGAGTGCAAAATACATTTTGCAGGATTTGATTCATTCACTGAATATGAAGTTCCGGCACGGTCACAACAGGAAGGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005911 GO:0006355 GO:0007275 GO:0008150 GO:0009506 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0022613 GO:0030054 GO:0030856 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0042254 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0045892 GO:0045934 GO:0045995 GO:0048316 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048507 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0055044 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

GN3L_Grn1 MMR_HSR1

Protein Analysis

208

Amino Acids

23.57

Weight (kDa)

5.79

Isoelectric Point (pI)

58.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07050
fragaria_vesca	FvH4_3g29200 FvH4_3g29200
malus_domestica	MD05G1177400.v1.1 MD10G1165800.v1.1
prunus_persica	Prupe.8G204300_v2.0.a1
pyrus_communis	pycom05g16330 pycom05g16380 pycom10g14300
rosa_chinensis	RchiOBHm_Chr6g0285031
rosa_laevigata	RLG00000012684
rosa_multiflora	Rmu_sc0002478.1_g000012
rosa_roxburghii	Rroxscaffold_7G00183820 Rroxscaffold_7G00184090
rosa_rugosa	Rorug06G0170100
rosa_samantha	Rh6AG281800 Rh6BG282400 Rh6CG284100 Rh6DG277300
rosa_wichuraiana	Rw6G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	103
Acc65I	GGTACC	1 cut(s)	284
AccB1I	GGYRCC	2 cut(s)	241, 284
AciI	CCGC	4 cut(s)	30, 44, 54, 99
AcoI	YGGCCR	1 cut(s)	100
AcuI	CTGAAG	1 cut(s)	156
AfaI	GTAC	4 cut(s)	269, 286, 379, 410
AfiI	CCNNNNNNNGG	4 cut(s)	155, 172, 176, 177
AgsI	TTSAA	3 cut(s)	37, 80, 472
AjnI	CCWGG	3 cut(s)	102, 475, 508
AluBI	AGCT	1 cut(s)	259
AluI	AGCT	1 cut(s)	259
AoxI	GGCC	5 cut(s)	100, 179, 263, 482, 524
ApeKI	GCWGC	1 cut(s)	232
ArsI	GACNNNNNNTTYG	2 cut(s)	73, 105
Asp718I	GGTACC	1 cut(s)	284
AspS9I	GGNCC	5 cut(s)	106, 125, 179, 413, 512
AsuHPI	GGTGA	3 cut(s)	68, 83, 238
AvaII	GGWCC	4 cut(s)	106, 125, 413, 512
BanI	GGYRCC	2 cut(s)	241, 284
BbvCI	CCTCAGC	1 cut(s)	260
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	2 cut(s)	312, 428
BceAI	ACGGC	2 cut(s)	172, 250
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BciT130I	CCWGG	3 cut(s)	104, 477, 510
BfaI	CTAG	1 cut(s)	27
BfuAI	ACCTGC	1 cut(s)	103
BisI	GCNGC	2 cut(s)	100, 233
BlsI	GCNGC	2 cut(s)	101, 234
Bme1390I	CCNGG	3 cut(s)	104, 477, 510
Bme18I	GGWCC	4 cut(s)	106, 125, 413, 512
BmgT120I	GGNCC	5 cut(s)	106, 125, 179, 413, 512
BmiI	GGNNCC	3 cut(s)	243, 286, 296
BmrFI	CCNGG	3 cut(s)	104, 477, 510
BmsI	GCATC	3 cut(s)	188, 219, 332
BpmI	CTGGAG	1 cut(s)	292
Bpu10I	CCTNAGC	1 cut(s)	260
BsaAI	YACGTR	1 cut(s)	377
BsaJI	CCNNGG	3 cut(s)	171, 336, 508
Bsc4I	CCNNNNNNNGG	4 cut(s)	155, 172, 176, 177
Bse118I	RCCGGY	1 cut(s)	281
Bse1I	ACTGG	1 cut(s)	275
Bse3DI	GCAATG	1 cut(s)	380
BseBI	CCWGG	3 cut(s)	104, 477, 510
BseDI	CCNNGG	3 cut(s)	171, 336, 508
BseGI	GGATG	3 cut(s)	67, 190, 347
BseLI	CCNNNNNNNGG	4 cut(s)	155, 172, 176, 177
BseMI	GCAATG	1 cut(s)	380
BseMII	CTCAG	1 cut(s)	251
BseNI	ACTGG	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	244
BseYI	CCCAGC	1 cut(s)	11
BshFI	GGCC	5 cut(s)	102, 181, 265, 484, 526
BshNI	GGYRCC	2 cut(s)	241, 284
BsiSI	CCGG	3 cut(s)	182, 282, 599
BslFI	GGGAC	2 cut(s)	177, 377
BslI	CCNNNNNNNGG	4 cut(s)	155, 172, 176, 177
BsmFI	GGGAC	2 cut(s)	177, 377
BsmI	GAATGC	1 cut(s)	146
BsnI	GGCC	5 cut(s)	102, 181, 265, 484, 526
Bsp143I	GATC	1 cut(s)	461
BspACI	CCGC	4 cut(s)	30, 44, 54, 99
BspANI	GGCC	5 cut(s)	102, 181, 265, 484, 526
BspCNI	CTCAG	1 cut(s)	252
BspHI	TCATGA	1 cut(s)	441
BspLI	GGNNCC	3 cut(s)	243, 286, 296
BspMI	ACCTGC	1 cut(s)	103
BspT107I	GGYRCC	2 cut(s)	241, 284
BsrDI	GCAATG	1 cut(s)	380
BsrFI	RCCGGY	1 cut(s)	281
BsrI	ACTGG	1 cut(s)	275
BssAI	RCCGGY	1 cut(s)	281
BssECI	CCNNGG	3 cut(s)	171, 336, 508
BssMI	GATC	1 cut(s)	461
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	3 cut(s)	104, 477, 510
Bst4CI	ACNGT	5 cut(s)	71, 226, 337, 413, 606
BstAPI	GCANNNNNTGC	1 cut(s)	241
BstBAI	YACGTR	1 cut(s)	377
BstC8I	GCNNGC	3 cut(s)	52, 161, 482
BstDEI	CTNAG	1 cut(s)	260
BstDSI	CCRYGG	1 cut(s)	336
BstEII	GGTNACC	1 cut(s)	503
BstF5I	GGATG	3 cut(s)	67, 190, 347
BstKTI	GATC	1 cut(s)	464
BstMBI	GATC	1 cut(s)	461
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstNI	CCWGG	3 cut(s)	104, 477, 510
BstNSI	RCATGY	1 cut(s)	54
BstPI	GGTNACC	1 cut(s)	503
BstSCI	CCNGG	3 cut(s)	102, 475, 508
BstV1I	GCAGC	1 cut(s)	244
BsuRI	GGCC	5 cut(s)	102, 181, 265, 484, 526
BtgI	CCRYGG	1 cut(s)	336
BtsCI	GGATG	3 cut(s)	67, 190, 347
BtsIMutI	CAGTG	1 cut(s)	582
BveI	ACCTGC	1 cut(s)	103
Cac8I	GCNNGC	3 cut(s)	52, 161, 482
CciI	TCATGA	1 cut(s)	441
Cfr10I	RCCGGY	1 cut(s)	281
Cfr13I	GGNCC	5 cut(s)	106, 125, 179, 413, 512
Csp6I	GTAC	4 cut(s)	268, 285, 378, 409
CviAII	CATG	3 cut(s)	51, 220, 442
CviJI	RGCY	8 cut(s)	11, 102, 181, 259, 265, 438, 484, 526
CviKI_1	RGCY	8 cut(s)	11, 102, 181, 259, 265, 438, 484, 526
CviQI	GTAC	4 cut(s)	268, 285, 378, 409
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	1 cut(s)	463
DpnII	GATC	1 cut(s)	461
EaeI	YGGCCR	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	171
Eco147I	AGGCCT	1 cut(s)	484
Eco47I	GGWCC	4 cut(s)	106, 125, 413, 512
Eco57I	CTGAAG	1 cut(s)	156
Eco91I	GGTNACC	1 cut(s)	503
EcoO65I	GGTNACC	1 cut(s)	503
EcoRII	CCWGG	3 cut(s)	102, 475, 508
EcoT14I	CCWWGG	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	3 cut(s)	54, 223, 445
FaqI	GGGAC	2 cut(s)	177, 377
FatI	CATG	3 cut(s)	50, 219, 441
FauI	CCCGC	2 cut(s)	23, 37
FauNDI	CATATG	1 cut(s)	536
Fnu4HI	GCNGC	2 cut(s)	100, 233
FokI	GGATG	3 cut(s)	74, 197, 354
Fsp4HI	GCNGC	2 cut(s)	100, 233
FspBI	CTAG	1 cut(s)	27
GluI	GCNGC	2 cut(s)	100, 233
GsaI	CCCAGC	1 cut(s)	15
GsuI	CTGGAG	1 cut(s)	292
HaeIII	GGCC	5 cut(s)	102, 181, 265, 484, 526
HapII	CCGG	3 cut(s)	182, 282, 599
Hin1II	CATG	3 cut(s)	54, 223, 445
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	3 cut(s)	5, 472, 575
HpaI	GTTAAC	1 cut(s)	67
HpaII	CCGG	3 cut(s)	182, 282, 599
HphI	GGTGA	3 cut(s)	68, 83, 238
Hpy166II	GTNNAC	2 cut(s)	67, 325
Hpy188I	TCNGA	4 cut(s)	23, 136, 396, 466
Hpy188III	TCNNGA	3 cut(s)	253, 442, 459
Hpy8I	GTNNAC	2 cut(s)	67, 325
HpyAV	CCTTC	3 cut(s)	170, 206, 611
HpyCH4III	ACNGT	5 cut(s)	71, 226, 337, 413, 606
HpyCH4IV	ACGT	1 cut(s)	376
HpyCH4V	TGCA	9 cut(s)	232, 306, 345, 359, 374, 385, 552, 566, 623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpyF3I	CTNAG	1 cut(s)	260
HpySE526I	ACGT	1 cut(s)	376
Hsp92II	CATG	3 cut(s)	54, 223, 445
KpnI	GGTACC	1 cut(s)	288
KspAI	GTTAAC	1 cut(s)	67
Kzo9I	GATC	1 cut(s)	461
LmnI	GCTCC	1 cut(s)	47
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	3 cut(s)	188, 219, 332
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	1 cut(s)	376
MaeIII	GTNAC	3 cut(s)	89, 503, 606
MalI	GATC	1 cut(s)	463
MboI	GATC	1 cut(s)	461
MboII	GAAGA	1 cut(s)	149
MluCI	AATT	3 cut(s)	418, 467, 530
MnlI	CCTC	6 cut(s)	52, 177, 213, 255, 267, 410
MseI	TTAA	2 cut(s)	66, 120
MslI	CAYNNNNRTG	1 cut(s)	224
MspI	CCGG	3 cut(s)	182, 282, 599
MspR9I	CCNGG	3 cut(s)	104, 477, 510
Mva1269I	GAATGC	1 cut(s)	146
MvaI	CCWGG	3 cut(s)	104, 477, 510
MwoI	GCNNNNNNNGC	1 cut(s)	241
NdeI	CATATG	1 cut(s)	536
NdeII	GATC	1 cut(s)	461
NlaIII	CATG	3 cut(s)	54, 223, 445
NlaIV	GGNNCC	3 cut(s)	243, 286, 296
NmuCI	GTSAC	2 cut(s)	89, 606
NspI	RCATGY	1 cut(s)	54
PaeI	GCATGC	1 cut(s)	54
PagI	TCATGA	1 cut(s)	441
PceI	AGGCCT	1 cut(s)	484
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PctI	GAATGC	1 cut(s)	146
PfeI	GAWTC	2 cut(s)	472, 575
PkrI	GCNGC	2 cut(s)	101, 234
Ppu21I	YACGTR	1 cut(s)	377
Psp6I	CCWGG	3 cut(s)	102, 475, 508
PspEI	GGTNACC	1 cut(s)	503
PspFI	CCCAGC	1 cut(s)	11
PspGI	CCWGG	3 cut(s)	102, 475, 508
PspN4I	GGNNCC	3 cut(s)	243, 286, 296
PspPI	GGNCC	5 cut(s)	106, 125, 179, 413, 512
RsaI	GTAC	4 cut(s)	269, 286, 379, 410
RsaNI	GTAC	4 cut(s)	268, 285, 378, 409
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	2 cut(s)	66, 120
SatI	GCNGC	2 cut(s)	100, 233
Sau3AI	GATC	1 cut(s)	461
Sau96I	GGNCC	5 cut(s)	106, 125, 179, 413, 512
ScrFI	CCNGG	3 cut(s)	104, 477, 510
SfaNI	GCATC	3 cut(s)	188, 219, 332
SinI	GGWCC	4 cut(s)	106, 125, 413, 512
SmiMI	CAYNNNNRTG	1 cut(s)	224
SphI	GCATGC	1 cut(s)	54
Sse9I	AATT	3 cut(s)	418, 467, 530
SseBI	AGGCCT	1 cut(s)	484
SsiI	CCGC	4 cut(s)	30, 44, 54, 99
SspMI	CTAG	1 cut(s)	27
StuI	AGGCCT	1 cut(s)	484
StyD4I	CCNGG	3 cut(s)	102, 475, 508
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	5 cut(s)	71, 226, 337, 413, 606
TaiI	ACGT	1 cut(s)	379
TasI	AATT	3 cut(s)	418, 467, 530
TauI	GCSGC	1 cut(s)	102
TfiI	GAWTC	2 cut(s)	472, 575
Tru1I	TTAA	2 cut(s)	66, 120
Tru9I	TTAA	2 cut(s)	66, 120
TscAI	CASTG	1 cut(s)	589
TseFI	GTSAC	2 cut(s)	89, 606
TseI	GCWGC	1 cut(s)	232
Tsp45I	GTSAC	2 cut(s)	89, 606
TspDTI	ATGAA	5 cut(s)	201, 430, 523, 567, 606
TspRI	CASTG	1 cut(s)	589
VpaK11BI	GGWCC	4 cut(s)	106, 125, 413, 512
XceI	RCATGY	1 cut(s)	54
XcmI	CCANNNNNNNNNTGG	1 cut(s)	534
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.