Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0011392

Physical Location & Seq

Genomic Coordinates Forward (+)

50479807 .. 50484957

Gene Structure 5151 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG282400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGGAAAAGATGGTGAGGAAGTCAGGTCCTAACAAGCATCTTGTGTTACTTCTTAACAAAATCGATCTTGTCCCGCGTGAAGCTGTTGAGAAGTGGCTCACTTATCTTAGGGAGGAGTTGCCAGCTGTTGCCTTCAAATGCAGCACCCAAGAACAAAAATCAAACTTAGGGTGGAAATCGTCCTCTAAAAAATCAAAACCCAGCAACCTTTTGCAGACAAGTGACTGTCTAGGAGCTGAAACTCTTCTTAAATTGTTGAAGAACTATTCAAGAAGTCATGAGATCAAGAAGTCGATTACAGTGGGTATTATTGGCCTACCTAATGTTGGTAAGAGTAGTCTCATTAACAGTTTGAAGAGATGCCGTGTCGTCAATGTTGGTTCCACTCCAGGGTTAACAAGATCACTACAAGAAGTCCAGTTGGATAATAATGTCAAATTGATAGATTGCCCTGGTGTTGTAATGCTCAAATCTACAGAAAATGATGCTTCTATAGCTCTTCGAAATTGCAAAAGAATTGAGAAGTTAGAGGATCCAATTGGTCCAGTGAGGGAAATTTTGAAGCTCTGCCCAGCCAGATTGTTGGTATCTATATACAAGCTCCCAAGCTTTGATACCGTTGATGACTTTCTGCAGAAGGTGGCTACTGTTAGGGGTAAGCTGAAAAAGGGTGGTGTTGTAGATATTGGAGCTGCAGCCAGAATTGTTCTGCATGACTGGAATGAGGGTAAAATTCCGTACTACACTATGCCCCCAGCAAGGAGTCAAGAAGAACCTTCAGAGGCGAAAATTGTTTCGAAGCTGGGCAAGGAGTTGAACATTGACGAAGTATACAATGGAGAATCTTCATTCATTGGAAGCCTCAAATCTGTTAATGATTTCCATCCTGTTGAAGTTCCTCCCAGTTGCCCACTCAATTTTGATGAGGATATGGAAGAGAATAAAAGACCATCAAGTCAAGCTAGTGGAAGTCCTAAAGATATGGTTGATGAAGACGATGACCAGTCCATGGCAGTTGAGGAGGATGATTCAGGCAAGGCAAAAGAAAAGACGGCTACCAAAACTAGCAGGCAGAATGAGAAATTGTATGCAGCTGAAGGTATGCTTAATACAAAGAAGAAGAAAGCAGAGAAGAAGATGAGGAAAAAGGCCAAATCAGCTTCTGCGGATGCTATGGAAGATGATTATGATTTTAAAGTTGATTACATCAAGAAGGGATCTGCCATGGATGTTGGTGATGGCATTGGGGGAAAAGATGACGGTCAAATTATTGGAAAGGTACCTATGTCTGGTATTGGATTTGATGAACCAGAGGAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005911 GO:0006355 GO:0007275 GO:0008150 GO:0009506 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0022613 GO:0030054 GO:0030856 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0042254 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0045892 GO:0045934 GO:0045995 GO:0048316 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048507 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0055044 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

GN3L_Grn1 MMR_HSR1

Protein Analysis

440

Amino Acids

48.49

Weight (kDa)

8.24

Isoelectric Point (pI)

44.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	100 - 163	1.1e-15	50S ribosome-binding GTPase
FeoB_N	PF02421	100 - 167	5.2e-09	Ferrous iron transport protein B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07050
fragaria_vesca	FvH4_3g29200 FvH4_3g29200
malus_domestica	MD05G1177400.v1.1 MD10G1165800.v1.1
prunus_persica	Prupe.8G204300_v2.0.a1
pyrus_communis	pycom05g16330 pycom05g16380 pycom10g14300
rosa_chinensis	RchiOBHm_Chr6g0285031
rosa_laevigata	RLG00000012684
rosa_multiflora	Rmu_sc0002478.1_g000012
rosa_roxburghii	Rroxscaffold_7G00183820 Rroxscaffold_7G00184090
rosa_rugosa	Rorug06G0170100
rosa_samantha	Rh6AG281800 Rh6BG282400 Rh6CG284100 Rh6DG277300
rosa_wichuraiana	Rw6G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	954
Acc65I	GGTACC	1 cut(s)	1279
AccB1I	GGYRCC	1 cut(s)	1279
AccB7I	CCANNNNNTGG	1 cut(s)	1009
AccI	GTMKAC	1 cut(s)	831
AccII	CGCG	1 cut(s)	76
AciI	CCGC	2 cut(s)	74, 1166
AclWI	GGATC	3 cut(s)	527, 540, 1225
AcsI	RAATTY	2 cut(s)	555, 732
AcuI	CTGAAG	2 cut(s)	762, 1116
AfaI	GTAC	2 cut(s)	740, 1281
AfiI	CCNNNNNNNGG	6 cut(s)	326, 390, 759, 1009, 1289, 1316
AgsI	TTSAA	7 cut(s)	136, 259, 270, 355, 562, 817, 893
AjnI	CCWGG	2 cut(s)	388, 451
Alw26I	GTCTC	1 cut(s)	344
AlwI	GGATC	3 cut(s)	527, 540, 1225
AlwNI	CAGNNNCTG	1 cut(s)	1163
AoxI	GGCC	2 cut(s)	313, 1149
ApeKI	GCWGC	4 cut(s)	141, 692, 695, 1091
ApoI	RAATTY	2 cut(s)	555, 732
Asp700I	GAANNNNTTC	1 cut(s)	243
Asp718I	GGTACC	1 cut(s)	1279
AspS9I	GGNCC	2 cut(s)	26, 542
AsuHPI	GGTGA	2 cut(s)	25, 1247
AsuII	TTCGAA	2 cut(s)	502, 797
AvaII	GGWCC	2 cut(s)	26, 542
BaeI	ACNNNNGTAYC	2 cut(s)	1271, 1304
BamHI	GGATCC	1 cut(s)	532
BanI	GGYRCC	1 cut(s)	1279
BbsI	GAAGAC	1 cut(s)	999
BbvI	GCAGC	4 cut(s)	153, 679, 707, 1103
BccI	CCATC	4 cut(s)	4, 891, 958, 1232
BceAI	ACGGC	2 cut(s)	348, 1068
BciT130I	CCWGG	2 cut(s)	390, 453
BcoDI	GTCTC	1 cut(s)	344
BfaI	CTAG	3 cut(s)	230, 963, 1065
BfmI	CTRYAG	4 cut(s)	474, 492, 632, 693
BisI	GCNGC	4 cut(s)	142, 693, 696, 1092
BlsI	GCNGC	4 cut(s)	143, 694, 697, 1093
Bme1390I	CCNGG	2 cut(s)	390, 453
Bme18I	GGWCC	2 cut(s)	26, 542
BmgT120I	GGNCC	2 cut(s)	26, 542
BmiI	GGNNCC	3 cut(s)	382, 534, 1281
BmrFI	CCNGG	2 cut(s)	390, 453
BmrI	ACTGGG	1 cut(s)	897
BmsI	GCATC	4 cut(s)	46, 350, 475, 1159
BmuI	ACTGGG	1 cut(s)	897
BpiI	GAAGAC	1 cut(s)	999
BpmI	CTGGAG	1 cut(s)	372
Bpu14I	TTCGAA	2 cut(s)	502, 797
Bsa29I	ATCGAT	1 cut(s)	63
BsaBI	GATNNNNATC	1 cut(s)	882
BsaJI	CCNNGG	4 cut(s)	389, 451, 1008, 1224
Bsc4I	CCNNNNNNNGG	6 cut(s)	326, 390, 759, 1009, 1289, 1316
Bse1I	ACTGG	5 cut(s)	418, 545, 722, 903, 1003
Bse8I	GATNNNNATC	1 cut(s)	882
BseBI	CCWGG	2 cut(s)	390, 453
BseCI	ATCGAT	1 cut(s)	63
BseDI	CCNNGG	4 cut(s)	389, 451, 1008, 1224
BseGI	GGATG	4 cut(s)	883, 1030, 1174, 1234
BseJI	GATNNNNATC	1 cut(s)	882
BseLI	CCNNNNNNNGG	6 cut(s)	326, 390, 759, 1009, 1289, 1316
BseNI	ACTGG	5 cut(s)	418, 545, 722, 903, 1003
BseRI	GAGGAG	2 cut(s)	128, 1034
BseXI	GCAGC	4 cut(s)	153, 679, 707, 1103
BseYI	CCCAGC	4 cut(s)	200, 571, 754, 802
Bsh1236I	CGCG	1 cut(s)	76
BshFI	GGCC	2 cut(s)	315, 1151
BshNI	GGYRCC	1 cut(s)	1279
BshVI	ATCGAT	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	6 cut(s)	326, 390, 759, 1009, 1289, 1316
BsmAI	GTCTC	1 cut(s)	344
BsmFI	GGGAC	1 cut(s)	56
BsnI	GGCC	2 cut(s)	315, 1151
Bsp119I	TTCGAA	2 cut(s)	502, 797
Bsp143I	GATC	5 cut(s)	64, 282, 401, 532, 1217
Bsp19I	CCATGG	2 cut(s)	1008, 1224
BspACI	CCGC	2 cut(s)	74, 1166
BspANI	GGCC	2 cut(s)	315, 1151
BspDI	ATCGAT	1 cut(s)	63
BspFNI	CGCG	1 cut(s)	76
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	3 cut(s)	382, 534, 1281
BspMAI	CTGCAG	2 cut(s)	636, 697
BspPI	GGATC	3 cut(s)	527, 540, 1225
BspQI	GCTCTTC	1 cut(s)	504
BspT104I	TTCGAA	2 cut(s)	502, 797
BspT107I	GGYRCC	1 cut(s)	1279
BsrI	ACTGG	5 cut(s)	418, 545, 722, 903, 1003
BssECI	CCNNGG	4 cut(s)	389, 451, 1008, 1224
BssMI	GATC	5 cut(s)	64, 282, 401, 532, 1217
BssNAI	GTATAC	1 cut(s)	832
BssT1I	CCWWGG	2 cut(s)	1008, 1224
Bst1107I	GTATAC	1 cut(s)	832
Bst2UI	CCWGG	2 cut(s)	390, 453
Bst4CI	ACNGT	6 cut(s)	227, 301, 350, 619, 649, 1262
Bst6I	CTCTTC	4 cut(s)	249, 350, 504, 930
BstBI	TTCGAA	2 cut(s)	502, 797
BstC8I	GCNNGC	2 cut(s)	123, 1070
BstDEI	CTNAG	2 cut(s)	107, 166
BstDSI	CCRYGG	2 cut(s)	1008, 1224
BstF5I	GGATG	4 cut(s)	883, 1030, 1174, 1234
BstFNI	CGCG	1 cut(s)	76
BstKTI	GATC	5 cut(s)	67, 285, 404, 535, 1220
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	5 cut(s)	64, 282, 401, 532, 1217
BstMWI	GCNNNNNNNGC	2 cut(s)	494, 1157
BstNI	CCWGG	2 cut(s)	390, 453
BstSCI	CCNGG	2 cut(s)	388, 451
BstSFI	CTRYAG	4 cut(s)	474, 492, 632, 693
BstUI	CGCG	1 cut(s)	76
BstV1I	GCAGC	4 cut(s)	153, 679, 707, 1103
BstV2I	GAAGAC	1 cut(s)	999
BstX2I	RGATCY	2 cut(s)	532, 1217
BstXI	CCANNNNNNTGG	1 cut(s)	583
BstYI	RGATCY	2 cut(s)	532, 1217
BstZ17I	GTATAC	1 cut(s)	832
Bsu15I	ATCGAT	1 cut(s)	63
BsuRI	GGCC	2 cut(s)	315, 1151
BsuTUI	ATCGAT	1 cut(s)	63
BtgI	CCRYGG	2 cut(s)	1008, 1224
BtsCI	GGATG	4 cut(s)	883, 1030, 1174, 1234
BtsIMutI	CAGTG	2 cut(s)	306, 552
Cac8I	GCNNGC	2 cut(s)	123, 1070
CaiI	CAGNNNCTG	1 cut(s)	1163
CciI	TCATGA	1 cut(s)	277
Cfr13I	GGNCC	2 cut(s)	26, 542
ClaI	ATCGAT	1 cut(s)	63
Csp6I	GTAC	2 cut(s)	739, 1280
CviAII	CATG	4 cut(s)	278, 713, 1009, 1225
CviQI	GTAC	2 cut(s)	739, 1280
DdeI	CTNAG	2 cut(s)	107, 166
DpnI	GATC	5 cut(s)	66, 284, 403, 534, 1219
DpnII	GATC	5 cut(s)	64, 282, 401, 532, 1217
DraI	TTTAAA	1 cut(s)	1195
DrdI	GACNNNNNNGTC	1 cut(s)	954
DseDI	GACNNNNNNGTC	1 cut(s)	954
Eam1104I	CTCTTC	4 cut(s)	249, 350, 504, 930
EarI	CTCTTC	4 cut(s)	249, 350, 504, 930
Eco130I	CCWWGG	2 cut(s)	1008, 1224
Eco47I	GGWCC	2 cut(s)	26, 542
Eco57I	CTGAAG	2 cut(s)	762, 1116
EcoO109I	RGGNCCY	1 cut(s)	26
EcoRII	CCWGG	2 cut(s)	388, 451
EcoT14I	CCWWGG	2 cut(s)	1008, 1224
ErhI	CCWWGG	2 cut(s)	1008, 1224
FaeI	CATG	4 cut(s)	281, 716, 1012, 1228
FalI	AAGNNNNNCTT	2 cut(s)	1089, 1121
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	4 cut(s)	277, 712, 1008, 1224
FauI	CCCGC	1 cut(s)	81
FblI	GTMKAC	1 cut(s)	831
Fnu4HI	GCNGC	4 cut(s)	142, 693, 696, 1092
FokI	GGATG	4 cut(s)	870, 1037, 1181, 1241
Fsp4HI	GCNGC	4 cut(s)	142, 693, 696, 1092
FspBI	CTAG	3 cut(s)	230, 963, 1065
GluI	GCNGC	4 cut(s)	142, 693, 696, 1092
GsaI	CCCAGC	4 cut(s)	204, 575, 758, 806
GsuI	CTGGAG	1 cut(s)	372
HaeIII	GGCC	2 cut(s)	315, 1151
Hin1II	CATG	4 cut(s)	281, 716, 1012, 1228
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HindIII	AAGCTT	1 cut(s)	607
HinfI	GANTC	3 cut(s)	763, 842, 1028
HpaI	GTTAAC	1 cut(s)	396
HphI	GGTGA	2 cut(s)	25, 1247
Hpy166II	GTNNAC	2 cut(s)	396, 832
Hpy188I	TCNGA	1 cut(s)	781
Hpy188III	TCNNGA	5 cut(s)	270, 278, 286, 767, 1210
Hpy8I	GTNNAC	2 cut(s)	396, 832
HpyAV	CCTTC	6 cut(s)	142, 631, 786, 1091, 1207, 1310
HpyCH4III	ACNGT	6 cut(s)	227, 301, 350, 619, 649, 1262
HpyCH4V	TGCA	7 cut(s)	141, 214, 510, 634, 695, 712, 1091
HpyF10VI	GCNNNNNNNGC	2 cut(s)	494, 1157
HpyF3I	CTNAG	2 cut(s)	107, 166
Hsp92II	CATG	4 cut(s)	281, 716, 1012, 1228
KpnI	GGTACC	1 cut(s)	1283
KspAI	GTTAAC	1 cut(s)	396
Kzo9I	GATC	5 cut(s)	64, 282, 401, 532, 1217
LguI	GCTCTTC	1 cut(s)	504
LmnI	GCTCC	3 cut(s)	233, 606, 689
Lsp1109I	GCAGC	4 cut(s)	153, 679, 707, 1103
LweI	GCATC	4 cut(s)	46, 350, 475, 1159
MaeI	CTAG	3 cut(s)	230, 963, 1065
MaeIII	GTNAC	2 cut(s)	45, 221
MalI	GATC	5 cut(s)	66, 284, 403, 534, 1219
MboI	GATC	5 cut(s)	64, 282, 401, 532, 1217
MfeI	CAATTG	1 cut(s)	537
MflI	RGATCY	2 cut(s)	532, 1217
MlyI	GAGTC	1 cut(s)	772
MmeI	TCCRAC	1 cut(s)	402
MroXI	GAANNNNTTC	1 cut(s)	243
MseI	TTAA	7 cut(s)	54, 249, 345, 395, 873, 1107, 1194
MspA1I	CMGCKG	2 cut(s)	125, 1094
MspR9I	CCNGG	2 cut(s)	390, 453
MunI	CAATTG	1 cut(s)	537
MvaI	CCWGG	2 cut(s)	390, 453
MvnI	CGCG	1 cut(s)	76
MwoI	GCNNNNNNNGC	2 cut(s)	494, 1157
NcoI	CCATGG	2 cut(s)	1008, 1224
NdeII	GATC	5 cut(s)	64, 282, 401, 532, 1217
NlaIII	CATG	4 cut(s)	281, 716, 1012, 1228
NlaIV	GGNNCC	3 cut(s)	382, 534, 1281
NmuCI	GTSAC	1 cut(s)	221
NspV	TTCGAA	2 cut(s)	502, 797
PagI	TCATGA	1 cut(s)	277
PciSI	GCTCTTC	1 cut(s)	504
PdmI	GAANNNNTTC	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	842, 1028
PflMI	CCANNNNNTGG	1 cut(s)	1009
PkrI	GCNGC	4 cut(s)	143, 694, 697, 1093
PleI	GAGTC	1 cut(s)	771
PpsI	GAGTC	1 cut(s)	771
PpuMI	RGGWCCY	1 cut(s)	26
Psp5II	RGGWCCY	1 cut(s)	26
Psp6I	CCWGG	2 cut(s)	388, 451
PspFI	CCCAGC	4 cut(s)	200, 571, 754, 802
PspGI	CCWGG	2 cut(s)	388, 451
PspN4I	GGNNCC	3 cut(s)	382, 534, 1281
PspPI	GGNCC	2 cut(s)	26, 542
PspPPI	RGGWCCY	1 cut(s)	26
PstI	CTGCAG	2 cut(s)	636, 697
PstNI	CAGNNNCTG	1 cut(s)	1163
PsuI	RGATCY	2 cut(s)	532, 1217
PvuII	CAGCTG	2 cut(s)	125, 1094
RsaI	GTAC	2 cut(s)	740, 1281
RsaNI	GTAC	2 cut(s)	739, 1280
SapI	GCTCTTC	1 cut(s)	504
SaqAI	TTAA	7 cut(s)	54, 249, 345, 395, 873, 1107, 1194
SatI	GCNGC	4 cut(s)	142, 693, 696, 1092
Sau3AI	GATC	5 cut(s)	64, 282, 401, 532, 1217
Sau96I	GGNCC	2 cut(s)	26, 542
SchI	GAGTC	1 cut(s)	772
ScrFI	CCNGG	2 cut(s)	390, 453
SfaNI	GCATC	4 cut(s)	46, 350, 475, 1159
SfcI	CTRYAG	4 cut(s)	474, 492, 632, 693
SfuI	TTCGAA	2 cut(s)	502, 797
SinI	GGWCC	2 cut(s)	26, 542
SsiI	CCGC	2 cut(s)	74, 1166
SspMI	CTAG	3 cut(s)	230, 963, 1065
StyD4I	CCNGG	2 cut(s)	388, 451
StyI	CCWWGG	2 cut(s)	1008, 1224
TaaI	ACNGT	6 cut(s)	227, 301, 350, 619, 649, 1262
TaqI	TCGA	4 cut(s)	63, 293, 502, 797
TfiI	GAWTC	2 cut(s)	842, 1028
Tru1I	TTAA	7 cut(s)	54, 249, 345, 395, 873, 1107, 1194
Tru9I	TTAA	7 cut(s)	54, 249, 345, 395, 873, 1107, 1194
TscAI	CASTG	2 cut(s)	306, 552
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	4 cut(s)	141, 692, 695, 1091
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	4 cut(s)	837, 841, 1005, 1320
TspGWI	ACGGA	1 cut(s)	726
TspRI	CASTG	2 cut(s)	306, 552
Van91I	CCANNNNNTGG	1 cut(s)	1009
VpaK11BI	GGWCC	2 cut(s)	26, 542
XapI	RAATTY	2 cut(s)	555, 732
XmiI	GTMKAC	1 cut(s)	831
XmnI	GAANNNNTTC	1 cut(s)	243
XspI	CTAG	3 cut(s)	230, 963, 1065

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.