pycom05g17110

SRSF protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0008320
Physical Location & Seq
Forward (+)
20358615 .. 20359284
670 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 570 bp
ATGATAAAAAAATGCGTGGTGAAGCATCTAGACCATTTTAAGCATTCGGGTCCGAATGGGCAACATGATTGTATGGTTTTTGAGTACTTGGGTGATAATTTGTTGACGCTTAAGTATAGTGATTACCGGGGAGTGCCACCACATAAGGTTAAGGAGATTTGTTATCATGTTTTGGTTAGATTGGATTATTTGCAGAAACAGCTGTCGATTATACACACTGACTTGAAGCCAAAGAATATCTTGTTGATGTCAATGATAGACCCGCTCAAGGATCTGACCAAGTCAAGAACACCTCTTATTCTTGCAAGTGGTAAAGACAAGGATGCATCGGAATCAGGGTATGCAAAATCGTTAAATGGGGAAATGAGTCGGAACCAGAAGAAAGGCGAAGCGTGCAGTTCAAGATCTACTAGTTATGTCAATGCAAATAGATCATTAGATGCTGGTGGGCCAAATGGCTCTCGTCCAGGAAGTCAGGGTAGTAAGAGAGGCAATCGCACTATAAGGCAGAAGTTTTTGGCATCAATTGATCTGAAGTGCAAATTGGTTGATTTTGGGAATGCATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0019219 GO:0019222 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0023052 GO:0031323 GO:0031325 GO:0032153 GO:0032386 GO:0032388 GO:0032507 GO:0032879 GO:0032880 GO:0033036 GO:0033120 GO:0033157 GO:0033365 GO:0034504 GO:0034613 GO:0034622 GO:0034641 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045185 GO:0045935 GO:0046483 GO:0046822 GO:0046824 GO:0046825 GO:0046827 GO:0048024 GO:0048026 GO:0048518 GO:0048522 GO:0050265 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051235 GO:0051252 GO:0051254 GO:0051457 GO:0051641 GO:0051651 GO:0051716 GO:0060255 GO:0060341 GO:0065003 GO:0065007 GO:0065008 GO:0070201 GO:0070569 GO:0070727 GO:0071704 GO:0071826 GO:0071840 GO:0072595 GO:0080090 GO:0090087 GO:0090304 GO:0090316 GO:0140096 GO:0140098 GO:1901360 GO:1901564 GO:1903311 GO:1903313 GO:1903827 GO:1903829 GO:1904951
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

190

Amino Acids

21.04

Weight (kDa)

9.55

Isoelectric Point (pI)

37.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 6 - 83 3.8e-09 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 265
AciI CCGC 1 cut(s) 263
AclWI GGATC 1 cut(s) 279
AcuI CTGAAG 1 cut(s) 554
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 268
AflII CTTAAG 1 cut(s) 110
AgsI TTSAA 2 cut(s) 226, 402
AhlI ACTAGT 1 cut(s) 410
AjnI CCWGG 1 cut(s) 466
AjuI GAANNNNNNNTTGG 2 cut(s) 527, 559
AluBI AGCT 1 cut(s) 202
AluI AGCT 1 cut(s) 202
AlwI GGATC 1 cut(s) 279
AoxI GGCC 1 cut(s) 449
AspS9I GGNCC 2 cut(s) 50, 449
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 2 cut(s) 31, 104
AvaII GGWCC 1 cut(s) 50
BciT130I CCWGG 1 cut(s) 468
BcnI CCSGG 1 cut(s) 128
BcuI ACTAGT 1 cut(s) 410
BfaI CTAG 2 cut(s) 29, 411
BfrI CTTAAG 1 cut(s) 110
BglII AGATCT 1 cut(s) 404
BmcAI AGTACT 1 cut(s) 86
Bme1390I CCNGG 2 cut(s) 128, 468
Bme18I GGWCC 1 cut(s) 50
BmgT120I GGNCC 2 cut(s) 50, 449
BmiI GGNNCC 2 cut(s) 51, 374
BmrFI CCNGG 2 cut(s) 128, 468
BmsI GCATC 5 cut(s) 34, 313, 335, 430, 530
BpuEI CTTGAG 1 cut(s) 251
BpuMI CCSGG 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 127
Bsc4I CCNNNNNNNGG 1 cut(s) 268
BseBI CCWGG 1 cut(s) 468
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 328
BseLI CCNNNNNNNGG 1 cut(s) 268
BsgI GTGCAG 1 cut(s) 415
BshFI GGCC 1 cut(s) 451
BsiSI CCGG 1 cut(s) 127
BslI CCNNNNNNNGG 1 cut(s) 268
BsmI GAATGC 2 cut(s) 43, 565
BsnI GGCC 1 cut(s) 451
Bsp143I GATC 4 cut(s) 271, 404, 431, 529
BspACI CCGC 1 cut(s) 263
BspANI GGCC 1 cut(s) 451
BspLI GGNNCC 2 cut(s) 51, 374
BspPI GGATC 1 cut(s) 279
BspTI CTTAAG 1 cut(s) 110
BsrBI CCGCTC 1 cut(s) 265
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 4 cut(s) 271, 404, 431, 529
Bst2UI CCWGG 1 cut(s) 468
BstAFI CTTAAG 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 394
BstF5I GGATG 1 cut(s) 328
BstKTI GATC 4 cut(s) 274, 407, 434, 532
BstMBI GATC 4 cut(s) 271, 404, 431, 529
BstMWI GCNNNNNNNGC 2 cut(s) 199, 393
BstNI CCWGG 1 cut(s) 468
BstNSI RCATGY 1 cut(s) 567
BstSCI CCNGG 2 cut(s) 126, 466
BstX2I RGATCY 2 cut(s) 271, 404
BstYI RGATCY 2 cut(s) 271, 404
BsuRI GGCC 1 cut(s) 451
BtsCI GGATG 1 cut(s) 328
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 394
Cfr13I GGNCC 2 cut(s) 50, 449
CseI GACGC 1 cut(s) 115
Csp6I GTAC 1 cut(s) 85
CviAII CATG 3 cut(s) 65, 167, 564
CviJI RGCY 4 cut(s) 202, 229, 451, 459
CviKI_1 RGCY 4 cut(s) 202, 229, 451, 459
CviQI GTAC 1 cut(s) 85
DpnI GATC 4 cut(s) 273, 406, 433, 531
DpnII GATC 4 cut(s) 271, 404, 431, 529
Eco47I GGWCC 1 cut(s) 50
Eco57I CTGAAG 1 cut(s) 554
EcoRII CCWGG 1 cut(s) 466
EcoT22I ATGCAT 2 cut(s) 328, 565
FaeI CATG 3 cut(s) 68, 170, 567
FalI AAGNNNNNCTT 2 cut(s) 224, 256
FatI CATG 3 cut(s) 64, 166, 563
FauI CCCGC 1 cut(s) 270
FokI GGATG 1 cut(s) 335
FspBI CTAG 2 cut(s) 29, 411
HaeIII GGCC 1 cut(s) 451
HapII CCGG 1 cut(s) 127
HgaI GACGC 1 cut(s) 115
Hin1II CATG 3 cut(s) 68, 170, 567
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HinfI GANTC 2 cut(s) 332, 367
HpaII CCGG 1 cut(s) 127
HphI GGTGA 2 cut(s) 31, 104
Hpy166II GTNNAC 1 cut(s) 105
Hpy188I TCNGA 5 cut(s) 54, 276, 331, 372, 534
Hpy188III TCNNGA 3 cut(s) 29, 285, 402
Hpy8I GTNNAC 1 cut(s) 105
HpyCH4V TGCA 8 cut(s) 193, 305, 326, 344, 396, 425, 540, 563
HpyF10VI GCNNNNNNNGC 2 cut(s) 199, 393
Hsp92II CATG 3 cut(s) 68, 170, 567
Kzo9I GATC 4 cut(s) 271, 404, 431, 529
LpnPI CCDG 7 cut(s) 140, 321, 389, 429, 453, 461, 480
LweI GCATC 5 cut(s) 34, 313, 335, 430, 530
MaeI CTAG 2 cut(s) 29, 411
MalI GATC 4 cut(s) 273, 406, 433, 531
MbiI CCGCTC 1 cut(s) 265
MboI GATC 4 cut(s) 271, 404, 431, 529
MboII GAAGA 1 cut(s) 391
MfeI CAATTG 1 cut(s) 525
MflI RGATCY 2 cut(s) 271, 404
MluCI AATT 3 cut(s) 97, 525, 542
MlyI GAGTC 1 cut(s) 376
MmeI TCCRAC 1 cut(s) 350
MnlI CCTC 2 cut(s) 303, 482
Mph1103I ATGCAT 2 cut(s) 328, 565
MseI TTAA 4 cut(s) 39, 111, 150, 353
MspA1I CMGCKG 1 cut(s) 202
MspCI CTTAAG 1 cut(s) 110
MspI CCGG 1 cut(s) 127
MspR9I CCNGG 2 cut(s) 128, 468
MunI CAATTG 1 cut(s) 525
Mva1269I GAATGC 2 cut(s) 43, 565
MvaI CCWGG 1 cut(s) 468
MwoI GCNNNNNNNGC 2 cut(s) 199, 393
NciI CCSGG 1 cut(s) 128
NdeII GATC 4 cut(s) 271, 404, 431, 529
NlaIII CATG 3 cut(s) 68, 170, 567
NlaIV GGNNCC 2 cut(s) 51, 374
NsiI ATGCAT 2 cut(s) 328, 565
NspI RCATGY 1 cut(s) 567
PctI GAATGC 2 cut(s) 43, 565
PfeI GAWTC 1 cut(s) 332
PflFI GACNNNGTC 1 cut(s) 280
PfoI TCCNGGA 1 cut(s) 466
PleI GAGTC 1 cut(s) 375
PpsI GAGTC 1 cut(s) 375
Psp6I CCWGG 1 cut(s) 466
PspGI CCWGG 1 cut(s) 466
PspN4I GGNNCC 2 cut(s) 51, 374
PspPI GGNCC 2 cut(s) 50, 449
PsuI RGATCY 2 cut(s) 271, 404
PsyI GACNNNGTC 1 cut(s) 280
PvuII CAGCTG 1 cut(s) 202
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
SaqAI TTAA 4 cut(s) 39, 111, 150, 353
Sau3AI GATC 4 cut(s) 271, 404, 431, 529
Sau96I GGNCC 2 cut(s) 50, 449
ScaI AGTACT 1 cut(s) 86
SchI GAGTC 1 cut(s) 376
ScrFI CCNGG 2 cut(s) 128, 468
SetI ASST 3 cut(s) 150, 204, 295
SfaNI GCATC 5 cut(s) 34, 313, 335, 430, 530
SinI GGWCC 1 cut(s) 50
SmlI CTYRAG 2 cut(s) 110, 266
SmoI CTYRAG 2 cut(s) 110, 266
SpeI ACTAGT 1 cut(s) 410
Sse9I AATT 3 cut(s) 97, 525, 542
SsiI CCGC 1 cut(s) 263
SspMI CTAG 2 cut(s) 29, 411
StyD4I CCNGG 2 cut(s) 126, 466
TaqI TCGA 1 cut(s) 206
TasI AATT 3 cut(s) 97, 525, 542
TatI WGTACW 1 cut(s) 84
TfiI GAWTC 1 cut(s) 332
Tru1I TTAA 4 cut(s) 39, 111, 150, 353
Tru9I TTAA 4 cut(s) 39, 111, 150, 353
TscAI CASTG 1 cut(s) 223
TspRI CASTG 1 cut(s) 223
Tth111I GACNNNGTC 1 cut(s) 280
Vha464I CTTAAG 1 cut(s) 110
VpaK11BI GGWCC 1 cut(s) 50
XbaI TCTAGA 1 cut(s) 28
XceI RCATGY 1 cut(s) 567
XspI CTAG 2 cut(s) 29, 411
ZrmI AGTACT 1 cut(s) 86
Zsp2I ATGCAT 2 cut(s) 328, 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.