Rh3AG170000

SRSF protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0008320
Physical Location & Seq
Reverse (-)
15736728 .. 15743281
6554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG170000.1

Sequence Viewer

Length: 1221 bp
ATGGTTTGTTTATGTTTATTTTCGTTTGGGTGTCAATGGCAGCGGTATGTTGCCCTGAAAGTGCAAAAGAGTGCCGATCACTACACTGAGGCGGCCATGGACGAGATCACCATATTGAAACAGATTGCAGAGGGAGACCCGGATGATAAAAAATGCGTGGTTAAGCTTCTGGACCACTTTAAGCACTCGGGTCCAAATGGGCAACATGTTTGCATGGTTTTTGAGTACTTGGGGGATAATCTGTTAACACTTATTAAGTACAGTGACTACCGCGGAGTGCCGTTGCATATGGTCAAGCAGATTTGTTATCATGTTCTGGTCGGATTGGATTACTTGCATAGACAGCTCTCTATTATACACACAGATTTGAAGCCGGAGAATATCTTGTTGTTGTCAATGATCAACCCTTCCAAGGATCCAACAAAGTCAAGTGCACCTCTCATTCTTCCAAGTAACAAGGACAAGGATGCATTCGACACAGGGGTTTCACAGCCATTGAATGGGGATACGTCTAGGAACCAGAAGAAAAAGATTAGAAGAAAGGCCAAGCGTGCGGCTCAAGAATGTGCAGACAGAGAGGAAACTGATGTTGATGTAGAAACATCGGGCGAGGCCGAGTCATCTCCTAATACAAAATTGAATGTGCATTCCGCCGAAGGCCAGAGTACTAGTTCTGTTAATACGAATAGATCGTCAGATGCTGATGGACCAAAGGGTGCTGGCACAGGAAATCAGGGCGGTAAGAGGAGAGGGAATCGTAGCATAAGGCAAAAGTTGTTGACATCAATGGACTTGAAGTGCAAATTAGTTGACTTTGGGAATGCATGTTGGACGTACAAACAGTTCACAAATGATATTCAAACAAGACAGTATAGGTGTCCAGAGGTGATCTTGGGATCAAAATATTCTACTTCAGCGGATCTTTGGTCTTTTGCTTGCATTTGTTTTGAGCTTGCAACTGGTGATGTGCTCTTTGATCCTCACAGTGGTGACAACTTTGACAGGGATGAGGTATGGACATATCTGGAATATAAATATTGTCTGTGTTGCTTTTTGTCTTTTTTGGCCAATCTTTGTTGCTTTCTGTATCATATCGAATATTCACCTATCCACAAACACACACCAACAGACACACAAACTCTGAGTTTTACAATTCATATGATGTCAAGTCCATTGGGACATACAACTAGAAAATTTTCATGTTTGCATACTAGAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0019219 GO:0019222 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0023052 GO:0031323 GO:0031325 GO:0032153 GO:0032386 GO:0032388 GO:0032507 GO:0032879 GO:0032880 GO:0033036 GO:0033120 GO:0033157 GO:0033365 GO:0034504 GO:0034613 GO:0034622 GO:0034641 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045185 GO:0045935 GO:0046483 GO:0046822 GO:0046824 GO:0046825 GO:0046827 GO:0048024 GO:0048026 GO:0048518 GO:0048522 GO:0050265 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051235 GO:0051252 GO:0051254 GO:0051457 GO:0051641 GO:0051651 GO:0051716 GO:0060255 GO:0060341 GO:0065003 GO:0065007 GO:0065008 GO:0070201 GO:0070569 GO:0070727 GO:0071704 GO:0071826 GO:0071840 GO:0072595 GO:0080090 GO:0090087 GO:0090304 GO:0090316 GO:0140096 GO:0140098 GO:1901360 GO:1901564 GO:1903311 GO:1903313 GO:1903827 GO:1903829 GO:1904951
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

406

Amino Acids

45.8

Weight (kDa)

7.51

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 15 - 191 6.3e-07 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 16 - 131 2.5e-15 Protein kinase domain
Pkinase PF00069 259 - 332 3.8e-13 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 500
AccII CGCG 1 cut(s) 273
AciI CCGC 8 cut(s) 43, 92, 271, 273, 554, 651, 738, 917
AclWI GGATC 5 cut(s) 410, 423, 904, 927, 971
AcoI YGGCCR 2 cut(s) 93, 1065
AcsI RAATTY 1 cut(s) 1193
AcuI CTGAAG 1 cut(s) 897
AfaI GTAC 4 cut(s) 227, 260, 667, 836
AfiI CCNNNNNNNGG 3 cut(s) 412, 500, 986
AflIII ACRYGT 1 cut(s) 205
AgsI TTSAA 6 cut(s) 118, 370, 499, 640, 796, 860
AhlI ACTAGT 1 cut(s) 668
AleI CACNNNNGTG 1 cut(s) 987
AluBI AGCT 3 cut(s) 166, 346, 952
AluI AGCT 3 cut(s) 166, 346, 952
Alw21I GWGCWC 2 cut(s) 436, 972
Alw26I GTCTC 1 cut(s) 129
Alw44I GTGCAC 1 cut(s) 432
AlwI GGATC 5 cut(s) 410, 423, 904, 927, 971
AlwNI CAGNNNCTG 1 cut(s) 701
Ama87I CYCGRG 1 cut(s) 187
AoxI GGCC 5 cut(s) 93, 543, 612, 658, 1065
ApaLI GTGCAC 1 cut(s) 432
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 1193
ArsI GACNNNNNNTTYG 2 cut(s) 677, 709
Asp700I GAANNNNTTC 1 cut(s) 1195
AspS9I GGNCC 3 cut(s) 172, 191, 707
AsuC2I CCSGG 1 cut(s) 140
AsuHPI GGTGA 5 cut(s) 100, 898, 974, 1001, 1095
AvaI CYCGRG 1 cut(s) 187
AvaII GGWCC 3 cut(s) 172, 191, 707
BaeGI GKGCMC 1 cut(s) 436
BalI TGGCCA 1 cut(s) 1067
BamHI GGATCC 1 cut(s) 415
Bbv12I GWGCWC 2 cut(s) 436, 972
BbvI GCAGC 1 cut(s) 52
BccI CCATC 1 cut(s) 698
BceAI ACGGC 1 cut(s) 265
BciVI GTATCC 1 cut(s) 499
BclI TGATCA 1 cut(s) 399
BcnI CCSGG 1 cut(s) 140
BcoDI GTCTC 1 cut(s) 129
BcuI ACTAGT 1 cut(s) 668
BfaI CTAG 4 cut(s) 513, 669, 1188, 1212
BfuI GTATCC 1 cut(s) 499
BisI GCNGC 3 cut(s) 41, 93, 555
BlsI GCNGC 3 cut(s) 42, 94, 556
BmcAI AGTACT 2 cut(s) 227, 667
Bme1390I CCNGG 1 cut(s) 140
Bme18I GGWCC 3 cut(s) 172, 191, 707
BmeT110I CYCGRG 1 cut(s) 187
BmgT120I GGNCC 3 cut(s) 172, 191, 707
BmiI GGNNCC 3 cut(s) 192, 417, 518
BmrFI CCNGG 1 cut(s) 140
BmsI GCATC 2 cut(s) 457, 688
BpuEI CTTGAG 1 cut(s) 543
BpuMI CCSGG 1 cut(s) 140
BsaI GGTCTC 1 cut(s) 129
BsaJI CCNNGG 3 cut(s) 96, 271, 411
Bsc4I CCNNNNNNNGG 3 cut(s) 412, 500, 986
Bse1I ACTGG 1 cut(s) 964
BseDI CCNNGG 3 cut(s) 96, 271, 411
BseGI GGATG 3 cut(s) 148, 472, 1012
BseLI CCNNNNNNNGG 3 cut(s) 412, 500, 986
BseMII CTCAG 2 cut(s) 78, 1133
BseNI ACTGG 1 cut(s) 964
BseRI GAGGAG 1 cut(s) 760
BseSI GKGCMC 1 cut(s) 436
BseXI GCAGC 1 cut(s) 52
BsgI GTGCAG 1 cut(s) 588
Bsh1236I CGCG 1 cut(s) 273
BshFI GGCC 5 cut(s) 95, 545, 614, 660, 1067
BsiHKAI GWGCWC 2 cut(s) 436, 972
BsiHKCI CYCGRG 1 cut(s) 187
BsiSI CCGG 2 cut(s) 140, 374
BslFI GGGAC 1 cut(s) 1191
BslI CCNNNNNNNGG 3 cut(s) 412, 500, 986
BsmAI GTCTC 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 1191
BsmI GAATGC 3 cut(s) 470, 646, 826
BsnI GGCC 5 cut(s) 95, 545, 614, 660, 1067
Bso31I GGTCTC 1 cut(s) 129
BsoBI CYCGRG 1 cut(s) 187
Bsp1286I GDGCHC 2 cut(s) 436, 972
Bsp143I GATC 9 cut(s) 76, 105, 399, 415, 689, 888, 896, 919, 976
Bsp19I CCATGG 1 cut(s) 96
BspACI CCGC 8 cut(s) 43, 92, 271, 273, 554, 651, 738, 917
BspANI GGCC 5 cut(s) 95, 545, 614, 660, 1067
BspCNI CTCAG 2 cut(s) 79, 1134
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 3 cut(s) 192, 417, 518
BspPI GGATC 5 cut(s) 410, 423, 904, 927, 971
BspTNI GGTCTC 1 cut(s) 129
BsrI ACTGG 1 cut(s) 964
BssECI CCNNGG 3 cut(s) 96, 271, 411
BssMI GATC 9 cut(s) 76, 105, 399, 415, 689, 888, 896, 919, 976
BssT1I CCWWGG 2 cut(s) 96, 411
Bst4CI ACNGT 4 cut(s) 263, 843, 870, 986
BstC8I GCNNGC 4 cut(s) 552, 721, 937, 954
BstDEI CTNAG 2 cut(s) 87, 1142
BstDSI CCRYGG 2 cut(s) 96, 271
BstF5I GGATG 3 cut(s) 148, 472, 1012
BstFNI CGCG 1 cut(s) 273
BstKTI GATC 9 cut(s) 79, 108, 402, 418, 692, 891, 899, 922, 979
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 9 cut(s) 76, 105, 399, 415, 689, 888, 896, 919, 976
BstMWI GCNNNNNNNGC 2 cut(s) 343, 551
BstNSI RCATGY 2 cut(s) 209, 828
BstSCI CCNGG 1 cut(s) 138
BstSLI GKGCMC 1 cut(s) 436
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 52
BstX2I RGATCY 2 cut(s) 415, 919
BstYI RGATCY 2 cut(s) 415, 919
BsuI GTATCC 1 cut(s) 499
BsuRI GGCC 5 cut(s) 95, 545, 614, 660, 1067
BtgI CCRYGG 2 cut(s) 96, 271
BtsCI GGATG 3 cut(s) 148, 472, 1012
BtsIMutI CAGTG 3 cut(s) 84, 268, 991
Cac8I GCNNGC 4 cut(s) 552, 721, 937, 954
CaiI CAGNNNCTG 1 cut(s) 701
Cfr13I GGNCC 3 cut(s) 172, 191, 707
Cfr42I CCGCGG 1 cut(s) 274
Csp6I GTAC 4 cut(s) 226, 259, 666, 835
CviAII CATG 6 cut(s) 97, 206, 214, 311, 825, 1200
CviQI GTAC 4 cut(s) 226, 259, 666, 835
DdeI CTNAG 2 cut(s) 87, 1142
DpnI GATC 9 cut(s) 78, 107, 401, 417, 691, 890, 898, 921, 978
DpnII GATC 9 cut(s) 76, 105, 399, 415, 689, 888, 896, 919, 976
EaeI YGGCCR 2 cut(s) 93, 1065
EciI GGCGGA 1 cut(s) 640
Eco130I CCWWGG 2 cut(s) 96, 411
Eco31I GGTCTC 1 cut(s) 129
Eco47I GGWCC 3 cut(s) 172, 191, 707
Eco57I CTGAAG 1 cut(s) 897
Eco88I CYCGRG 1 cut(s) 187
EcoT14I CCWWGG 2 cut(s) 96, 411
EcoT22I ATGCAT 2 cut(s) 472, 826
ErhI CCWWGG 2 cut(s) 96, 411
FaeI CATG 6 cut(s) 100, 209, 217, 314, 828, 1203
FaqI GGGAC 1 cut(s) 1191
FatI CATG 6 cut(s) 96, 205, 213, 310, 824, 1199
FauNDI CATATG 2 cut(s) 288, 1158
FbaI TGATCA 1 cut(s) 399
Fnu4HI GCNGC 3 cut(s) 41, 93, 555
FokI GGATG 3 cut(s) 155, 479, 1019
Fsp4HI GCNGC 3 cut(s) 41, 93, 555
FspBI CTAG 4 cut(s) 513, 669, 1188, 1212
GluI GCNGC 3 cut(s) 41, 93, 555
HaeIII GGCC 5 cut(s) 95, 545, 614, 660, 1067
HapII CCGG 2 cut(s) 140, 374
Hin1II CATG 6 cut(s) 100, 209, 217, 314, 828, 1203
HincII GTYRAC 3 cut(s) 246, 780, 811
HindII GTYRAC 3 cut(s) 246, 780, 811
HindIII AAGCTT 1 cut(s) 164
HinfI GANTC 2 cut(s) 617, 754
HpaI GTTAAC 1 cut(s) 246
HpaII CCGG 2 cut(s) 140, 374
HphI GGTGA 5 cut(s) 100, 898, 974, 1001, 1095
Hpy166II GTNNAC 5 cut(s) 246, 434, 780, 811, 846
Hpy188I TCNGA 3 cut(s) 323, 697, 1143
Hpy188III TCNNGA 4 cut(s) 170, 560, 881, 1025
Hpy8I GTNNAC 5 cut(s) 246, 434, 780, 811, 846
HpyAV CCTTC 2 cut(s) 417, 650
HpyCH4III ACNGT 4 cut(s) 263, 843, 870, 986
HpyCH4IV ACGT 2 cut(s) 509, 833
HpyF10VI GCNNNNNNNGC 2 cut(s) 343, 551
HpyF3I CTNAG 2 cut(s) 87, 1142
HpySE526I ACGT 2 cut(s) 509, 833
Hsp92II CATG 6 cut(s) 100, 209, 217, 314, 828, 1203
Ksp22I TGATCA 1 cut(s) 399
KspAI GTTAAC 1 cut(s) 246
KspI CCGCGG 1 cut(s) 274
Kzo9I GATC 9 cut(s) 76, 105, 399, 415, 689, 888, 896, 919, 976
Lsp1109I GCAGC 1 cut(s) 52
LweI GCATC 2 cut(s) 457, 688
MaeI CTAG 4 cut(s) 513, 669, 1188, 1212
MaeII ACGT 2 cut(s) 509, 833
MaeIII GTNAC 3 cut(s) 263, 452, 989
MalI GATC 9 cut(s) 78, 107, 401, 417, 691, 890, 898, 921, 978
MboI GATC 9 cut(s) 76, 105, 399, 415, 689, 888, 896, 919, 976
MboII GAAGA 3 cut(s) 437, 535, 549
MflI RGATCY 2 cut(s) 415, 919
MhlI GDGCHC 2 cut(s) 436, 972
MlsI TGGCCA 1 cut(s) 1067
MluCI AATT 4 cut(s) 635, 803, 1152, 1193
MluNI TGGCCA 1 cut(s) 1067
MlyI GAGTC 1 cut(s) 626
MmeI TCCRAC 3 cut(s) 301, 443, 809
Mox20I TGGCCA 1 cut(s) 1067
Mph1103I ATGCAT 2 cut(s) 472, 826
MroXI GAANNNNTTC 1 cut(s) 1195
MscI TGGCCA 1 cut(s) 1067
MseI TTAA 5 cut(s) 162, 180, 245, 255, 678
MslI CAYNNNNRTG 1 cut(s) 987
Msp20I TGGCCA 1 cut(s) 1067
MspA1I CMGCKG 3 cut(s) 43, 273, 917
MspI CCGG 2 cut(s) 140, 374
MspR9I CCNGG 1 cut(s) 140
Mva1269I GAATGC 3 cut(s) 470, 646, 826
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 2 cut(s) 343, 551
NciI CCSGG 1 cut(s) 140
NcoI CCATGG 1 cut(s) 96
NdeI CATATG 2 cut(s) 288, 1158
NdeII GATC 9 cut(s) 76, 105, 399, 415, 689, 888, 896, 919, 976
NlaIII CATG 6 cut(s) 100, 209, 217, 314, 828, 1203
NlaIV GGNNCC 3 cut(s) 192, 417, 518
NmeAIII GCCGAG 1 cut(s) 640
NmuCI GTSAC 2 cut(s) 263, 989
NsiI ATGCAT 2 cut(s) 472, 826
NspI RCATGY 2 cut(s) 209, 828
OliI CACNNNNGTG 1 cut(s) 987
PciI ACATGT 1 cut(s) 205
PcsI WCGNNNNNNNCGW 1 cut(s) 689
PctI GAATGC 3 cut(s) 470, 646, 826
PdmI GAANNNNTTC 1 cut(s) 1195
PfeI GAWTC 1 cut(s) 754
PflMI CCANNNNNTGG 1 cut(s) 500
PkrI GCNGC 3 cut(s) 42, 94, 556
PleI GAGTC 1 cut(s) 625
PpsI GAGTC 1 cut(s) 625
PscI ACATGT 1 cut(s) 205
PspN4I GGNNCC 3 cut(s) 192, 417, 518
PspPI GGNCC 3 cut(s) 172, 191, 707
PsrI GAACNNNNNNTAC 2 cut(s) 827, 859
PstNI CAGNNNCTG 1 cut(s) 701
PsuI RGATCY 2 cut(s) 415, 919
RsaI GTAC 4 cut(s) 227, 260, 667, 836
RsaNI GTAC 4 cut(s) 226, 259, 666, 835
RseI CAYNNNNRTG 1 cut(s) 987
SacII CCGCGG 1 cut(s) 274
SaqAI TTAA 5 cut(s) 162, 180, 245, 255, 678
SatI GCNGC 3 cut(s) 41, 93, 555
Sau3AI GATC 9 cut(s) 76, 105, 399, 415, 689, 888, 896, 919, 976
Sau96I GGNCC 3 cut(s) 172, 191, 707
ScaI AGTACT 2 cut(s) 227, 667
SchI GAGTC 1 cut(s) 626
ScrFI CCNGG 1 cut(s) 140
SduI GDGCHC 2 cut(s) 436, 972
SfaNI GCATC 2 cut(s) 457, 688
Sfr303I CCGCGG 1 cut(s) 274
SgrBI CCGCGG 1 cut(s) 274
SinI GGWCC 3 cut(s) 172, 191, 707
SmiMI CAYNNNNRTG 1 cut(s) 987
SmlI CTYRAG 1 cut(s) 558
SmoI CTYRAG 1 cut(s) 558
SpeI ACTAGT 1 cut(s) 668
Sse9I AATT 4 cut(s) 635, 803, 1152, 1193
SsiI CCGC 8 cut(s) 43, 92, 271, 273, 554, 651, 738, 917
SspI AATATT 3 cut(s) 905, 1037, 1100
SspMI CTAG 4 cut(s) 513, 669, 1188, 1212
StyD4I CCNGG 1 cut(s) 138
StyI CCWWGG 2 cut(s) 96, 411
TaaI ACNGT 4 cut(s) 263, 843, 870, 986
TaiI ACGT 2 cut(s) 512, 836
TaqI TCGA 2 cut(s) 474, 1095
TasI AATT 4 cut(s) 635, 803, 1152, 1193
TatI WGTACW 3 cut(s) 225, 258, 665
TauI GCSGC 2 cut(s) 95, 557
TfiI GAWTC 1 cut(s) 754
Tru1I TTAA 5 cut(s) 162, 180, 245, 255, 678
Tru9I TTAA 5 cut(s) 162, 180, 245, 255, 678
TscAI CASTG 3 cut(s) 91, 268, 991
TseFI GTSAC 2 cut(s) 263, 989
TseI GCWGC 1 cut(s) 40
Tsp45I GTSAC 2 cut(s) 263, 989
TspDTI ATGAA 2 cut(s) 1145, 1188
TspRI CASTG 3 cut(s) 91, 268, 991
Van91I CCANNNNNTGG 1 cut(s) 500
VneI GTGCAC 1 cut(s) 432
VpaK11BI GGWCC 3 cut(s) 172, 191, 707
XapI RAATTY 1 cut(s) 1193
XceI RCATGY 2 cut(s) 209, 828
XmnI GAANNNNTTC 1 cut(s) 1195
XspI CTAG 4 cut(s) 513, 669, 1188, 1212
ZrmI AGTACT 2 cut(s) 227, 667
Zsp2I ATGCAT 2 cut(s) 472, 826
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.