Rorug03G0118700

SRSF protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0008320
Physical Location & Seq
Reverse (-)
9624558 .. 9625892
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0118700.1

Sequence Viewer

Length: 573 bp
ATGTCATCGTTCGGATCCGGGTCTACCCGCCCCTTCGACGACGGAGAGACTCAATCTCCGCCGTCGATCTTTTCAACCGGCGGTGGATTTGGAAGCTCCGAGGCGGAGGAGGGGCTTGCCCTGAGAGAGTGGCGGAGGCGGAATGCGATTGAGCTGGAGGAGAAGGAGAAGAAGGAGAAAGAGAAGCTGAAGCAGATAATAGAGGAAGCCGAGGCGTTCAAAGTGGAGTTCTACAGGAAGCGGGAGCTGAACGTGGAGAAGAAGAAGGCTTCGAACAGAGAAGCCGAGAGGGTATTTCTGGAAAATCAGGAGAAGTTTCATGCAGAAGCGGAGAGGAGGAATTACTGGAAAGCAGTTGCGGAGATGATTCCTCGTGAGGTTGCAGTGATTGAGAAGAGGGGGAAGAGAGAGAAAGAGAAGAATAAGGGCTCTGTGGTTGTGATTCACGGGCCGAAGCCTGGGAAGCCCACCGATCTTTCGAGGATGCGTCAGATTCTGGTGAAGCTGAAGCAGAGTCCTCCTGCTCACTGGAACCCTAAGCCAGAGGATGAGGTGGCTGTGGCTCGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0019219 GO:0019222 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0023052 GO:0031323 GO:0031325 GO:0032153 GO:0032386 GO:0032388 GO:0032507 GO:0032879 GO:0032880 GO:0033036 GO:0033120 GO:0033157 GO:0033365 GO:0034504 GO:0034613 GO:0034622 GO:0034641 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045185 GO:0045935 GO:0046483 GO:0046822 GO:0046824 GO:0046825 GO:0046827 GO:0048024 GO:0048026 GO:0048518 GO:0048522 GO:0050265 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051235 GO:0051252 GO:0051254 GO:0051457 GO:0051641 GO:0051651 GO:0051716 GO:0060255 GO:0060341 GO:0065003 GO:0065007 GO:0065008 GO:0070201 GO:0070569 GO:0070727 GO:0071704 GO:0071826 GO:0071840 GO:0072595 GO:0080090 GO:0090087 GO:0090304 GO:0090316 GO:0140096 GO:0140098 GO:1901360 GO:1901564 GO:1903311 GO:1903313 GO:1903827 GO:1903829 GO:1904951
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

190

Amino Acids

21.8

Weight (kDa)

9.39

Isoelectric Point (pI)

61.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clathrin_lg_ch PF01086 33 - 173 1.2e-09 Clathrin light chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 23
AciI CCGC 9 cut(s) 28, 59, 81, 104, 133, 139, 241, 329, 359
AclWI GGATC 2 cut(s) 9, 22
AcuI CTGAAG 2 cut(s) 209, 527
AfiI CCNNNNNNNGG 1 cut(s) 458
AgsI TTSAA 2 cut(s) 75, 220
AjnI CCWGG 1 cut(s) 457
AluBI AGCT 5 cut(s) 96, 154, 187, 247, 505
AluI AGCT 5 cut(s) 96, 154, 187, 247, 505
Alw26I GTCTC 1 cut(s) 41
AlwI GGATC 2 cut(s) 9, 22
AlwNI CAGNNNCTG 1 cut(s) 496
AoxI GGCC 1 cut(s) 449
AspS9I GGNCC 1 cut(s) 449
AsuC2I CCSGG 1 cut(s) 19
AsuHPI GGTGA 1 cut(s) 511
AsuII TTCGAA 1 cut(s) 272
BamHI GGATCC 1 cut(s) 14
BanII GRGCYC 1 cut(s) 431
BauI CACGAG 2 cut(s) 372, 564
BceAI ACGGC 1 cut(s) 46
BciT130I CCWGG 1 cut(s) 459
BcnI CCSGG 1 cut(s) 19
BcoDI GTCTC 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 232
Bme1390I CCNGG 2 cut(s) 19, 459
BmgT120I GGNCC 1 cut(s) 449
BmiI GGNNCC 2 cut(s) 16, 533
BmrFI CCNGG 2 cut(s) 19, 459
BmsI GCATC 1 cut(s) 474
BpmI CTGGAG 1 cut(s) 176
Bpu10I CCTNAGC 1 cut(s) 537
Bpu14I TTCGAA 1 cut(s) 272
BpuMI CCSGG 1 cut(s) 19
BsaJI CCNNGG 3 cut(s) 99, 210, 458
BsaXI ACNNNNNCTCC 2 cut(s) 40, 70
Bsc4I CCNNNNNNNGG 1 cut(s) 458
Bse118I RCCGGY 1 cut(s) 77
Bse1I ACTGG 2 cut(s) 350, 533
BseBI CCWGG 1 cut(s) 459
BseDI CCNNGG 3 cut(s) 99, 210, 458
BseGI GGATG 2 cut(s) 489, 553
BseLI CCNNNNNNNGG 1 cut(s) 458
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 2 cut(s) 350, 533
BseRI GAGGAG 3 cut(s) 122, 173, 349
BshFI GGCC 1 cut(s) 451
BsiSI CCGG 2 cut(s) 18, 78
BslI CCNNNNNNNGG 1 cut(s) 458
BsmAI GTCTC 1 cut(s) 41
BsmI GAATGC 1 cut(s) 148
BsnI GGCC 1 cut(s) 451
Bsp119I TTCGAA 1 cut(s) 272
Bsp1286I GDGCHC 1 cut(s) 431
Bsp143I GATC 3 cut(s) 14, 66, 472
BspACI CCGC 9 cut(s) 28, 59, 81, 104, 133, 139, 241, 329, 359
BspANI GGCC 1 cut(s) 451
BspCNI CTCAG 1 cut(s) 114
BspLI GGNNCC 2 cut(s) 16, 533
BspPI GGATC 2 cut(s) 9, 22
BspT104I TTCGAA 1 cut(s) 272
BsrFI RCCGGY 1 cut(s) 77
BsrI ACTGG 2 cut(s) 350, 533
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 3 cut(s) 99, 210, 458
BssMI GATC 3 cut(s) 14, 66, 472
BssSI CACGAG 2 cut(s) 372, 564
Bst2BI CACGAG 2 cut(s) 372, 564
Bst2UI CCWGG 1 cut(s) 459
Bst6I CTCTTC 2 cut(s) 389, 398
BstBI TTCGAA 1 cut(s) 272
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 3 cut(s) 122, 537, 570
BstF5I GGATG 2 cut(s) 489, 553
BstKTI GATC 3 cut(s) 17, 69, 475
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 3 cut(s) 14, 66, 472
BstMWI GCNNNNNNNGC 1 cut(s) 463
BstNI CCWGG 1 cut(s) 459
BstSCI CCNGG 2 cut(s) 17, 457
BstSFI CTRYAG 1 cut(s) 232
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
BsuRI GGCC 1 cut(s) 451
BtsCI GGATG 2 cut(s) 489, 553
BtsI GCAGTG 1 cut(s) 390
BtsIMutI CAGTG 2 cut(s) 390, 526
Cac8I GCNNGC 1 cut(s) 117
CaiI CAGNNNCTG 1 cut(s) 496
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 449
CseI GACGC 1 cut(s) 476
CviAII CATG 1 cut(s) 320
DdeI CTNAG 3 cut(s) 122, 537, 570
DpnI GATC 3 cut(s) 16, 68, 474
DpnII GATC 3 cut(s) 14, 66, 472
Eam1104I CTCTTC 2 cut(s) 389, 398
EarI CTCTTC 2 cut(s) 389, 398
EciI GGCGGA 4 cut(s) 48, 119, 148, 154
Eco24I GRGCYC 1 cut(s) 431
Eco57I CTGAAG 2 cut(s) 209, 527
EcoRII CCWGG 1 cut(s) 457
EcoT38I GRGCYC 1 cut(s) 431
FaeI CATG 1 cut(s) 323
FaiI YATR 1 cut(s) 321
FatI CATG 1 cut(s) 319
FauI CCCGC 2 cut(s) 35, 234
FblI GTMKAC 1 cut(s) 23
FokI GGATG 2 cut(s) 496, 560
FriOI GRGCYC 1 cut(s) 431
GsuI CTGGAG 1 cut(s) 176
HaeIII GGCC 1 cut(s) 451
HapII CCGG 2 cut(s) 18, 78
HgaI GACGC 1 cut(s) 476
Hin1II CATG 1 cut(s) 323
HinfI GANTC 5 cut(s) 49, 367, 442, 493, 514
HpaII CCGG 2 cut(s) 18, 78
HphI GGTGA 1 cut(s) 511
Hpy166II GTNNAC 1 cut(s) 24
Hpy188I TCNGA 3 cut(s) 14, 100, 492
Hpy188III TCNNGA 3 cut(s) 299, 308, 374
Hpy8I GTNNAC 1 cut(s) 24
Hpy99I CGWCG 3 cut(s) 41, 44, 67
HpyAV CCTTC 4 cut(s) 43, 157, 166, 259
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 2 cut(s) 323, 383
HpyF10VI GCNNNNNNNGC 1 cut(s) 463
HpyF3I CTNAG 3 cut(s) 122, 537, 570
HpySE526I ACGT 1 cut(s) 252
Hsp92II CATG 1 cut(s) 323
Kzo9I GATC 3 cut(s) 14, 66, 472
LmnI GCTCC 2 cut(s) 101, 244
LweI GCATC 1 cut(s) 474
MaeII ACGT 1 cut(s) 252
MalI GATC 3 cut(s) 16, 68, 474
MboI GATC 3 cut(s) 14, 66, 472
MboII GAAGA 6 cut(s) 181, 271, 274, 406, 415, 430
MflI RGATCY 1 cut(s) 14
MhlI GDGCHC 1 cut(s) 431
MluCI AATT 1 cut(s) 340
MlyI GAGTC 2 cut(s) 43, 523
MspI CCGG 2 cut(s) 18, 78
MspR9I CCNGG 2 cut(s) 19, 459
Mva1269I GAATGC 1 cut(s) 148
MvaI CCWGG 1 cut(s) 459
MwoI GCNNNNNNNGC 1 cut(s) 463
NciI CCSGG 1 cut(s) 19
NdeII GATC 3 cut(s) 14, 66, 472
NlaIII CATG 1 cut(s) 323
NlaIV GGNNCC 2 cut(s) 16, 533
NmeAIII GCCGAG 2 cut(s) 235, 310
NspV TTCGAA 1 cut(s) 272
PctI GAATGC 1 cut(s) 148
PfeI GAWTC 3 cut(s) 367, 442, 493
PleI GAGTC 2 cut(s) 43, 522
PpsI GAGTC 2 cut(s) 43, 522
Psp6I CCWGG 1 cut(s) 457
PspGI CCWGG 1 cut(s) 457
PspN4I GGNNCC 2 cut(s) 16, 533
PspPI GGNCC 1 cut(s) 449
PstNI CAGNNNCTG 1 cut(s) 496
PsuI RGATCY 1 cut(s) 14
Sau3AI GATC 3 cut(s) 14, 66, 472
Sau96I GGNCC 1 cut(s) 449
SchI GAGTC 2 cut(s) 43, 523
ScrFI CCNGG 2 cut(s) 19, 459
SduI GDGCHC 1 cut(s) 431
SetI ASST 8 cut(s) 98, 156, 189, 249, 255, 381, 507, 555
SfaNI GCATC 1 cut(s) 474
SfcI CTRYAG 1 cut(s) 232
SfuI TTCGAA 1 cut(s) 272
Sse9I AATT 1 cut(s) 340
SsiI CCGC 9 cut(s) 28, 59, 81, 104, 133, 139, 241, 329, 359
StyD4I CCNGG 2 cut(s) 17, 457
TaiI ACGT 1 cut(s) 255
TaqI TCGA 4 cut(s) 36, 65, 272, 479
TasI AATT 1 cut(s) 340
TfiI GAWTC 3 cut(s) 367, 442, 493
TscAI CASTG 2 cut(s) 390, 533
TspDTI ATGAA 1 cut(s) 308
TspGWI ACGGA 1 cut(s) 57
TspRI CASTG 2 cut(s) 390, 533
XmiI GTMKAC 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.