pycom15g28980

SRSF protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0008320
Physical Location & Seq
Forward (+)
25555971 .. 25556549
579 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g28980.1

Sequence Viewer

Length: 579 bp
ATGGTGAAGCTTTTAGACCATTTTAAGCATTCGGGTTCGAATGGGCAACATGTTTGTATGGTTTTTGAGTACTTGGGTGATAATATGTTGACGCTGATTAAGTATAGTGATTACCGGGGAGTGCCACTACATAAGGTTAAGGAGATTTGTTATCATGTTTTGGTTGGATTGGATTATTTGCACAGACATCTGTCGATTATATACACTGATTTGAAGCTAGAGAATATCTTGTTGATGTCAATGATAGACTTGCTGAAGGATCCGACAAAGTCAAGAGCGCCTCTTATTCTTCCAGGTGGTAAAGACAATAATGCATCGGAGTCGGGGTATGCAAAAGCGTTAAACGGGGATATAAGTTGGAACCAGAAGAAAAATATTAGAAGAAAGGTGAAGCATGTAGCTCAAAAGTGTGTGGATAGAGATGAAGCTGATGCTGATGTAGAAACATCCACTGAGGTAGAGGCATCTCCTAACACAAGATTGAATGTGCGTTCTGTCGAAGACCAGTCTACTAGTTCTGTTAATGTAAATAGATCATCATATGTTGGTGGGCCAAATGGCTCACGTCCAGGAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0019219 GO:0019222 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0023052 GO:0031323 GO:0031325 GO:0032153 GO:0032386 GO:0032388 GO:0032507 GO:0032879 GO:0032880 GO:0033036 GO:0033120 GO:0033157 GO:0033365 GO:0034504 GO:0034613 GO:0034622 GO:0034641 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045185 GO:0045935 GO:0046483 GO:0046822 GO:0046824 GO:0046825 GO:0046827 GO:0048024 GO:0048026 GO:0048518 GO:0048522 GO:0050265 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051235 GO:0051252 GO:0051254 GO:0051457 GO:0051641 GO:0051651 GO:0051716 GO:0060255 GO:0060341 GO:0065003 GO:0065007 GO:0065008 GO:0070201 GO:0070569 GO:0070727 GO:0071704 GO:0071826 GO:0071840 GO:0072595 GO:0080090 GO:0090087 GO:0090304 GO:0090316 GO:0140096 GO:0140098 GO:1901360 GO:1901564 GO:1903311 GO:1903313 GO:1903827 GO:1903829 GO:1904951
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

193

Amino Acids

21.44

Weight (kDa)

8.36

Isoelectric Point (pI)

37.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 5 - 80 1.2e-10 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 509
AclWI GGATC 2 cut(s) 254, 267
AcuI CTGAAG 1 cut(s) 275
AfaI GTAC 1 cut(s) 71
AflIII ACRYGT 1 cut(s) 49
AgsI TTSAA 2 cut(s) 214, 484
AhlI ACTAGT 1 cut(s) 512
AjiI CACGTC 1 cut(s) 566
AjnI CCWGG 2 cut(s) 292, 568
AluBI AGCT 4 cut(s) 10, 217, 401, 428
AluI AGCT 4 cut(s) 10, 217, 401, 428
AlwI GGATC 2 cut(s) 254, 267
AoxI GGCC 1 cut(s) 551
AspLEI GCGC 1 cut(s) 280
AspS9I GGNCC 1 cut(s) 551
AsuC2I CCSGG 1 cut(s) 116
AsuHPI GGTGA 3 cut(s) 16, 89, 400
AsuII TTCGAA 1 cut(s) 38
BamHI GGATCC 1 cut(s) 259
BbsI GAAGAC 1 cut(s) 507
BcgI CGANNNNNNTGC 2 cut(s) 303, 337
BciT130I CCWGG 2 cut(s) 294, 570
BcnI CCSGG 1 cut(s) 116
BcuI ACTAGT 1 cut(s) 512
BfaI CTAG 2 cut(s) 218, 513
BfoI RGCGCY 1 cut(s) 281
BmcAI AGTACT 1 cut(s) 71
Bme1390I CCNGG 3 cut(s) 116, 294, 570
BmgBI CACGTC 1 cut(s) 566
BmgT120I GGNCC 1 cut(s) 551
BmiI GGNNCC 2 cut(s) 261, 362
BmrFI CCNGG 3 cut(s) 116, 294, 570
BmsI GCATC 3 cut(s) 323, 421, 473
BoxI GACNNNNGTC 1 cut(s) 190
BpiI GAAGAC 1 cut(s) 507
Bpu14I TTCGAA 1 cut(s) 38
BpuMI CCSGG 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 115
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bse1I ACTGG 1 cut(s) 505
BseBI CCWGG 2 cut(s) 294, 570
BseDI CCNNGG 1 cut(s) 115
BseGI GGATG 1 cut(s) 446
BseMII CTCAG 1 cut(s) 444
BseNI ACTGG 1 cut(s) 505
BshFI GGCC 1 cut(s) 553
BsiSI CCGG 1 cut(s) 115
BsmI GAATGC 1 cut(s) 28
BsnI GGCC 1 cut(s) 553
Bsp119I TTCGAA 1 cut(s) 38
Bsp143I GATC 2 cut(s) 259, 533
BspANI GGCC 1 cut(s) 553
BspCNI CTCAG 1 cut(s) 445
BspLI GGNNCC 2 cut(s) 261, 362
BspPI GGATC 2 cut(s) 254, 267
BspT104I TTCGAA 1 cut(s) 38
BsrI ACTGG 1 cut(s) 505
BssECI CCNNGG 1 cut(s) 115
BssMI GATC 2 cut(s) 259, 533
Bst2UI CCWGG 2 cut(s) 294, 570
BstBI TTCGAA 1 cut(s) 38
BstDEI CTNAG 1 cut(s) 453
BstF5I GGATG 1 cut(s) 446
BstH2I RGCGCY 1 cut(s) 281
BstHHI GCGC 1 cut(s) 280
BstKTI GATC 2 cut(s) 262, 536
BstMBI GATC 2 cut(s) 259, 533
BstNI CCWGG 2 cut(s) 294, 570
BstNSI RCATGY 2 cut(s) 53, 398
BstPAI GACNNNNGTC 1 cut(s) 190
BstSCI CCNGG 3 cut(s) 114, 292, 568
BstV2I GAAGAC 1 cut(s) 507
BstX2I RGATCY 1 cut(s) 259
BstYI RGATCY 1 cut(s) 259
BsuRI GGCC 1 cut(s) 553
BtrI CACGTC 1 cut(s) 566
BtsCI GGATG 1 cut(s) 446
BtsIMutI CAGTG 2 cut(s) 204, 450
CfoI GCGC 1 cut(s) 280
Cfr13I GGNCC 1 cut(s) 551
CseI GACGC 1 cut(s) 100
Csp6I GTAC 1 cut(s) 70
CviAII CATG 3 cut(s) 50, 155, 395
CviJI RGCY 6 cut(s) 10, 217, 401, 428, 553, 561
CviKI_1 RGCY 6 cut(s) 10, 217, 401, 428, 553, 561
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 1 cut(s) 453
DpnI GATC 2 cut(s) 261, 535
DpnII GATC 2 cut(s) 259, 533
Eco57I CTGAAG 1 cut(s) 275
EcoRII CCWGG 2 cut(s) 292, 568
EcoT22I ATGCAT 1 cut(s) 316
FaeI CATG 3 cut(s) 53, 158, 398
FatI CATG 3 cut(s) 49, 154, 394
FauNDI CATATG 1 cut(s) 541
FblI GTMKAC 1 cut(s) 509
FokI GGATG 1 cut(s) 433
FspBI CTAG 2 cut(s) 218, 513
GlaI GCGC 1 cut(s) 279
HaeII RGCGCY 1 cut(s) 281
HaeIII GGCC 1 cut(s) 553
HapII CCGG 1 cut(s) 115
HgaI GACGC 1 cut(s) 100
HhaI GCGC 1 cut(s) 280
Hin1II CATG 3 cut(s) 53, 158, 398
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 1 cut(s) 320
HpaII CCGG 1 cut(s) 115
HphI GGTGA 3 cut(s) 16, 89, 400
Hpy166II GTNNAC 2 cut(s) 90, 510
Hpy188I TCNGA 2 cut(s) 264, 319
Hpy188III TCNNGA 1 cut(s) 273
Hpy8I GTNNAC 2 cut(s) 90, 510
HpyAV CCTTC 1 cut(s) 250
HpyCH4IV ACGT 1 cut(s) 565
HpyCH4V TGCA 3 cut(s) 181, 314, 332
HpyF3I CTNAG 1 cut(s) 453
HpySE526I ACGT 1 cut(s) 565
Hsp92II CATG 3 cut(s) 53, 158, 398
HspAI GCGC 1 cut(s) 278
Kzo9I GATC 2 cut(s) 259, 533
LpnPI CCDG 6 cut(s) 128, 279, 306, 377, 518, 555
LweI GCATC 3 cut(s) 323, 421, 473
MaeI CTAG 2 cut(s) 218, 513
MaeII ACGT 1 cut(s) 565
MalI GATC 2 cut(s) 261, 535
MboI GATC 2 cut(s) 259, 533
MboII GAAGA 4 cut(s) 281, 379, 393, 512
MflI RGATCY 1 cut(s) 259
MlyI GAGTC 1 cut(s) 329
MmeI TCCRAC 3 cut(s) 145, 287, 338
MnlI CCTC 3 cut(s) 291, 448, 454
Mph1103I ATGCAT 1 cut(s) 316
MseI TTAA 5 cut(s) 24, 99, 138, 341, 522
MspI CCGG 1 cut(s) 115
MspR9I CCNGG 3 cut(s) 116, 294, 570
Mva1269I GAATGC 1 cut(s) 28
MvaI CCWGG 2 cut(s) 294, 570
NciI CCSGG 1 cut(s) 116
NdeI CATATG 1 cut(s) 541
NdeII GATC 2 cut(s) 259, 533
NlaIII CATG 3 cut(s) 53, 158, 398
NlaIV GGNNCC 2 cut(s) 261, 362
NsiI ATGCAT 1 cut(s) 316
NspI RCATGY 2 cut(s) 53, 398
NspV TTCGAA 1 cut(s) 38
PciI ACATGT 1 cut(s) 49
PctI GAATGC 1 cut(s) 28
PflFI GACNNNGTC 1 cut(s) 268
PfoI TCCNGGA 1 cut(s) 568
PleI GAGTC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 328
PscI ACATGT 1 cut(s) 49
PshAI GACNNNNGTC 1 cut(s) 190
Psp6I CCWGG 2 cut(s) 292, 568
PspGI CCWGG 2 cut(s) 292, 568
PspN4I GGNNCC 2 cut(s) 261, 362
PspPI GGNCC 1 cut(s) 551
PsuI RGATCY 1 cut(s) 259
PsyI GACNNNGTC 1 cut(s) 268
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
SaqAI TTAA 5 cut(s) 24, 99, 138, 341, 522
Sau3AI GATC 2 cut(s) 259, 533
Sau96I GGNCC 1 cut(s) 551
ScaI AGTACT 1 cut(s) 71
SchI GAGTC 1 cut(s) 329
ScrFI CCNGG 3 cut(s) 116, 294, 570
SetI ASST 9 cut(s) 12, 138, 219, 298, 390, 403, 430, 459, 568
SfaNI GCATC 3 cut(s) 323, 421, 473
SfuI TTCGAA 1 cut(s) 38
SpeI ACTAGT 1 cut(s) 512
SspI AATATT 1 cut(s) 376
SspMI CTAG 2 cut(s) 218, 513
StyD4I CCNGG 3 cut(s) 114, 292, 568
TaiI ACGT 1 cut(s) 568
TaqI TCGA 3 cut(s) 38, 194, 498
TatI WGTACW 1 cut(s) 69
Tru1I TTAA 5 cut(s) 24, 99, 138, 341, 522
Tru9I TTAA 5 cut(s) 24, 99, 138, 341, 522
TscAI CASTG 2 cut(s) 211, 457
TspDTI ATGAA 1 cut(s) 438
TspRI CASTG 2 cut(s) 211, 457
Tth111I GACNNNGTC 1 cut(s) 268
XceI RCATGY 2 cut(s) 53, 398
XmiI GTMKAC 1 cut(s) 509
XspI CTAG 2 cut(s) 218, 513
ZrmI AGTACT 1 cut(s) 71
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.